Wall clock time and date at job start Tue Mar 31 2020 19:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47302 * 2 1 4 4 C 1.46908 * 110.99812 * 299.59765 * 3 2 1 5 5 C 1.53002 * 109.46877 * 288.51800 * 4 3 2 6 6 C 1.46904 * 111.00123 * 63.54801 * 3 2 1 7 7 C 1.52996 * 109.46989 * 66.04637 * 6 3 2 8 8 O 1.42906 * 109.46974 * 65.00165 * 7 6 3 9 9 C 1.35899 * 116.99899 * 179.97438 * 8 7 6 10 10 C 1.38796 * 120.01893 * 359.72745 * 9 8 7 11 11 C 1.38180 * 120.08047 * 179.69598 * 10 9 8 12 12 C 1.38161 * 120.12256 * 0.60185 * 11 10 9 13 13 C 1.38884 * 120.04238 * 359.67523 * 12 11 10 14 14 N 1.39938 * 120.04559 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00248 * 213.07740 * 14 13 12 16 16 O 1.21591 * 119.99404 * 5.18830 * 15 14 13 17 17 N 1.34773 * 120.00244 * 185.17934 * 15 14 13 18 18 C 1.46497 * 120.00130 * 179.97438 * 17 15 14 19 19 C 1.50702 * 109.47158 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00102 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99789 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00371 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99568 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47204 * 60.00441 * 23 21 19 25 25 H 1.48502 * 109.46881 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47183 * 300.00223 * 23 21 19 27 27 C 1.38587 * 120.01682 * 180.02562 * 9 8 7 28 28 H 1.09004 * 109.46952 * 185.69250 * 1 2 3 29 29 H 1.08999 * 109.47058 * 305.69048 * 1 2 3 30 30 H 1.08999 * 109.47145 * 65.69314 * 1 2 3 31 31 H 1.09000 * 109.47646 * 239.99907 * 2 1 3 32 32 H 1.08999 * 109.47239 * 120.00016 * 2 1 3 33 33 H 1.08997 * 109.47407 * 48.51629 * 4 3 2 34 34 H 1.09001 * 109.47205 * 168.52081 * 4 3 2 35 35 H 1.09003 * 109.47233 * 305.73551 * 5 4 3 36 36 H 1.09002 * 109.47476 * 65.73693 * 5 4 3 37 37 H 1.09001 * 109.47120 * 185.73817 * 5 4 3 38 38 H 1.08996 * 109.46726 * 306.04711 * 6 3 2 39 39 H 1.08999 * 109.46732 * 186.05321 * 6 3 2 40 40 H 1.08999 * 109.47567 * 305.00500 * 7 6 3 41 41 H 1.08995 * 109.46847 * 184.99941 * 7 6 3 42 42 H 1.08007 * 119.96554 * 359.97438 * 10 9 8 43 43 H 1.08000 * 119.93550 * 180.27447 * 11 10 9 44 44 H 1.08000 * 119.98038 * 179.69924 * 12 11 10 45 45 H 0.96996 * 119.99856 * 33.07994 * 14 13 12 46 46 H 0.97002 * 120.00053 * 0.02562 * 17 15 14 47 47 H 1.09003 * 109.47352 * 300.00852 * 18 17 15 48 48 H 1.09002 * 109.46800 * 60.00961 * 18 17 15 49 49 H 0.96996 * 120.00579 * 180.02562 * 22 21 19 50 50 H 1.08002 * 120.06072 * 359.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5565 2.1071 -1.1926 5 6 2.2981 1.5850 -2.4249 6 6 1.6192 2.0850 1.2279 7 6 2.3225 1.4502 2.4292 8 8 3.7324 1.6562 2.3193 9 6 4.5091 1.1511 3.3135 10 6 3.9247 0.4759 4.3761 11 6 4.7137 -0.0437 5.3845 12 6 6.0853 0.1179 5.3447 13 6 6.6749 0.7976 4.2868 14 7 8.0642 0.9608 4.2462 15 6 8.5964 2.0738 3.7035 16 8 7.8707 2.9773 3.3352 17 7 9.9328 2.1854 3.5693 18 6 10.5112 3.3950 2.9789 19 6 12.0124 3.2680 2.9431 20 1 12.4881 2.3754 3.3218 21 6 12.7787 4.2914 2.4268 22 7 12.1996 5.3785 1.9662 23 14 14.6395 4.1337 2.3818 24 1 15.0166 2.9544 1.5619 25 1 15.2259 5.3604 1.7846 26 1 15.1552 3.9612 3.7636 27 6 5.8845 1.3152 3.2701 28 1 -0.3633 -1.0226 0.1019 29 1 -0.3633 0.5995 0.8346 30 1 -0.3633 0.4230 -0.9366 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.4855 1.9499 -1.3194 34 1 1.7558 3.1720 -1.0727 35 1 3.3731 1.6485 -2.2560 36 1 2.0191 0.5466 -2.6040 37 1 2.0304 2.1880 -3.2925 38 1 0.5397 2.0060 1.3554 39 1 1.9006 3.1355 1.1553 40 1 2.1122 0.3809 2.4502 41 1 1.9587 1.9102 3.3479 42 1 2.8523 0.3525 4.4126 43 1 4.2569 -0.5725 6.2080 44 1 6.6993 -0.2850 6.1366 45 1 8.6441 0.2729 4.6085 46 1 10.5116 1.4645 3.8629 47 1 10.1331 3.5206 1.9643 48 1 10.2338 4.2610 3.5799 49 1 12.7386 6.0984 1.6026 50 1 6.3405 1.8441 2.4462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903462329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:14 Heat of formation + Delta-G solvation = -33.551657 kcal Electronic energy + Delta-G solvation = -28355.502592 eV Core-core repulsion = 24383.427044 eV Total energy + Delta-G solvation = -3972.075549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40280 -39.51007 -38.55423 -37.11206 -34.38641 -33.96139 -32.32454 -32.13188 -31.31421 -29.94606 -29.10517 -27.72498 -26.94017 -24.69089 -23.50992 -22.75298 -22.43128 -21.37249 -20.24953 -19.82371 -18.46329 -18.12570 -16.87128 -16.49850 -16.15887 -15.94614 -15.71069 -15.54805 -15.15711 -14.77431 -14.71724 -14.39237 -14.10315 -13.78812 -13.55396 -13.39261 -13.12526 -13.04483 -12.82201 -12.60989 -12.42164 -12.21644 -11.96776 -11.88083 -11.75945 -11.71273 -11.62715 -11.30950 -11.06628 -10.97141 -10.92132 -10.85358 -10.64297 -10.29330 -9.95249 -9.41371 -9.39152 -8.73154 -8.50583 -8.17326 -8.00490 -7.68232 -6.14766 -4.21870 1.48703 1.61560 3.03987 3.26824 3.31027 3.32601 3.40047 3.59872 3.69328 4.11025 4.33250 4.56665 4.60156 4.72025 4.87009 4.91664 4.93611 4.98272 5.01722 5.05100 5.06809 5.19296 5.21212 5.21842 5.28889 5.31904 5.35591 5.47397 5.57672 5.62414 5.71053 5.71420 5.77336 5.83296 6.05050 6.09896 6.40618 6.41837 6.55289 6.62659 6.79583 6.83380 7.08887 7.15363 7.43521 7.52067 7.55301 7.62029 7.85164 8.01075 8.71087 8.86133 9.22912 9.45201 10.95346 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002221 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.315071 B =12602.833171 C =14404.832993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 N -0.527 5.527 4 C 0.046 3.954 5 C -0.148 4.148 6 C 0.050 3.950 7 C 0.065 3.935 8 O -0.293 6.293 9 C 0.151 3.849 10 C -0.240 4.240 11 C -0.063 4.063 12 C -0.196 4.196 13 C 0.221 3.779 14 N -0.694 5.694 15 C 0.689 3.311 16 O -0.577 6.577 17 N -0.722 5.722 18 C 0.266 3.734 19 C -0.544 4.544 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.884 5.884 23 Si 0.905 3.095 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.156 4.156 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.404 0.596 46 H 0.388 0.612 47 H 0.028 0.972 48 H 0.027 0.973 49 H 0.267 0.733 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.032 -13.678 0.511 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.085 4.085 3 N -0.251 5.251 4 C -0.081 4.081 5 C -0.206 4.206 6 C -0.077 4.077 7 C -0.011 4.011 8 O -0.206 6.206 9 C 0.105 3.895 10 C -0.260 4.260 11 C -0.081 4.081 12 C -0.217 4.217 13 C 0.124 3.876 14 N -0.342 5.342 15 C 0.389 3.611 16 O -0.454 6.454 17 N -0.374 5.374 18 C 0.145 3.855 19 C -0.583 4.583 20 H 0.081 0.919 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.177 4.177 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.239 0.761 46 H 0.221 0.779 47 H 0.046 0.954 48 H 0.045 0.955 49 H 0.076 0.924 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.941 -12.456 -0.177 26.988 hybrid contribution 0.520 -0.750 0.528 1.055 sum -23.421 -13.207 0.350 26.890 Atomic orbital electron populations 1.22451 0.98517 1.02408 1.01994 1.22250 0.92477 0.90587 1.03196 1.62207 1.59425 1.01980 1.01487 1.22145 0.97168 0.98444 0.90376 1.21765 1.01952 1.00620 0.96220 1.22226 0.96901 0.99509 0.89103 1.22805 0.80002 1.00387 0.97924 1.86216 1.17556 1.73353 1.43493 1.18760 0.90553 0.92784 0.87439 1.21065 0.99881 1.07486 0.97536 1.20571 0.92731 0.97486 0.97344 1.20714 0.95184 1.07416 0.98370 1.17167 0.82422 0.95551 0.92488 1.42860 1.04844 1.22080 1.64433 1.16185 0.83693 0.81898 0.79342 1.90923 1.59738 1.39465 1.55259 1.45778 1.03285 1.23378 1.64916 1.19050 0.92255 0.80511 0.93666 1.21170 0.90656 1.03586 1.42843 0.91931 1.24943 0.99310 0.94909 0.94834 1.69961 1.36054 1.06429 1.39709 0.86457 0.84360 0.77577 0.78390 1.20064 1.21069 1.20096 1.20416 0.90417 1.05887 1.00975 0.91998 0.92465 0.92303 0.90309 0.90598 0.94442 0.90822 0.91370 0.93029 0.92437 0.92418 0.89413 0.92061 0.91839 0.86133 0.85920 0.85907 0.76059 0.77933 0.95442 0.95511 0.92351 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 9.24 37.16 0.34 -0.86 16 2 C 0.04 0.34 5.71 -3.83 -0.02 0.32 16 3 N -0.53 -5.09 4.62 -234.63 -1.08 -6.18 16 4 C 0.05 0.39 5.53 -3.82 -0.02 0.37 16 5 C -0.15 -1.23 9.83 37.16 0.37 -0.87 16 6 C 0.05 0.44 5.16 -3.82 -0.02 0.42 16 7 C 0.06 0.64 4.80 37.16 0.18 0.82 16 8 O -0.29 -4.28 10.08 -19.42 -0.20 -4.48 16 9 C 0.15 2.29 6.68 -39.25 -0.26 2.03 16 10 C -0.24 -2.92 9.04 -39.40 -0.36 -3.28 16 11 C -0.06 -0.71 10.03 -39.63 -0.40 -1.11 16 12 C -0.20 -2.49 9.96 -39.37 -0.39 -2.88 16 13 C 0.22 3.52 6.28 -83.71 -0.53 2.99 16 14 N -0.69 -11.11 5.35 -14.24 -0.08 -11.19 16 15 C 0.69 14.49 8.30 -86.92 -0.72 13.77 16 16 O -0.58 -14.57 14.01 5.29 0.07 -14.49 16 17 N -0.72 -15.44 5.55 -66.41 -0.37 -15.81 16 18 C 0.27 7.13 5.43 -5.19 -0.03 7.10 16 19 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 20 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.88 -26.20 13.29 55.43 0.74 -25.46 16 23 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.16 -2.75 8.59 -39.25 -0.34 -3.09 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.34 6.11 -51.93 -0.32 0.02 16 30 H 0.06 0.36 6.48 -51.93 -0.34 0.03 16 31 H 0.08 0.64 6.79 -51.93 -0.35 0.28 16 32 H 0.08 0.63 6.22 -51.93 -0.32 0.31 16 33 H 0.04 0.27 5.90 -51.93 -0.31 -0.04 16 34 H 0.07 0.63 7.82 -51.93 -0.41 0.23 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.40 6.98 -51.93 -0.36 0.04 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.39 6.01 -51.93 -0.31 0.08 16 39 H 0.09 0.83 7.87 -51.93 -0.41 0.43 16 40 H 0.06 0.53 5.80 -51.93 -0.30 0.23 16 41 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 42 H 0.12 1.15 6.29 -52.48 -0.33 0.82 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.40 4.88 8.83 -40.82 -0.36 4.52 16 46 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.15 3.06 6.39 -52.49 -0.34 2.73 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -33.92 399.29 -10.21 -44.13 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.68 Total: 9.28 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.61 Total: 2.29 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.79 Total: -58.64 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.12 Total: -18.97 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.92 -10.21 -44.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903462329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.582 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds