Wall clock time and date at job start Tue Mar 31 2020 19:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47302 * 2 1 4 4 C 1.46908 * 110.99812 * 299.59765 * 3 2 1 5 5 C 1.53002 * 109.46877 * 288.51800 * 4 3 2 6 6 C 1.46904 * 111.00123 * 63.54801 * 3 2 1 7 7 C 1.52996 * 109.46989 * 66.04637 * 6 3 2 8 8 O 1.42906 * 109.46974 * 65.00165 * 7 6 3 9 9 C 1.35899 * 116.99899 * 179.97438 * 8 7 6 10 10 C 1.38796 * 120.01893 * 359.72745 * 9 8 7 11 11 C 1.38180 * 120.08047 * 179.69598 * 10 9 8 12 12 C 1.38161 * 120.12256 * 0.60185 * 11 10 9 13 13 C 1.38884 * 120.04238 * 359.67523 * 12 11 10 14 14 N 1.39938 * 120.04559 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00248 * 213.07740 * 14 13 12 16 16 O 1.21591 * 119.99404 * 5.18830 * 15 14 13 17 17 N 1.34773 * 120.00244 * 185.17934 * 15 14 13 18 18 C 1.46497 * 120.00130 * 179.97438 * 17 15 14 19 19 C 1.50702 * 109.47158 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00102 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99789 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00371 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99568 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47204 * 60.00441 * 23 21 19 25 25 H 1.48502 * 109.46881 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47183 * 300.00223 * 23 21 19 27 27 C 1.38587 * 120.01682 * 180.02562 * 9 8 7 28 28 H 1.09004 * 109.46952 * 185.69250 * 1 2 3 29 29 H 1.08999 * 109.47058 * 305.69048 * 1 2 3 30 30 H 1.08999 * 109.47145 * 65.69314 * 1 2 3 31 31 H 1.09000 * 109.47646 * 239.99907 * 2 1 3 32 32 H 1.08999 * 109.47239 * 120.00016 * 2 1 3 33 33 H 1.08997 * 109.47407 * 48.51629 * 4 3 2 34 34 H 1.09001 * 109.47205 * 168.52081 * 4 3 2 35 35 H 1.09003 * 109.47233 * 305.73551 * 5 4 3 36 36 H 1.09002 * 109.47476 * 65.73693 * 5 4 3 37 37 H 1.09001 * 109.47120 * 185.73817 * 5 4 3 38 38 H 1.08996 * 109.46726 * 306.04711 * 6 3 2 39 39 H 1.08999 * 109.46732 * 186.05321 * 6 3 2 40 40 H 1.08999 * 109.47567 * 305.00500 * 7 6 3 41 41 H 1.08995 * 109.46847 * 184.99941 * 7 6 3 42 42 H 1.08007 * 119.96554 * 359.97438 * 10 9 8 43 43 H 1.08000 * 119.93550 * 180.27447 * 11 10 9 44 44 H 1.08000 * 119.98038 * 179.69924 * 12 11 10 45 45 H 0.96996 * 119.99856 * 33.07994 * 14 13 12 46 46 H 0.97002 * 120.00053 * 0.02562 * 17 15 14 47 47 H 1.09003 * 109.47352 * 300.00852 * 18 17 15 48 48 H 1.09002 * 109.46800 * 60.00961 * 18 17 15 49 49 H 0.96996 * 120.00579 * 180.02562 * 22 21 19 50 50 H 1.08002 * 120.06072 * 359.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5565 2.1071 -1.1926 5 6 2.2981 1.5850 -2.4249 6 6 1.6192 2.0850 1.2279 7 6 2.3225 1.4502 2.4292 8 8 3.7324 1.6562 2.3193 9 6 4.5091 1.1511 3.3135 10 6 3.9247 0.4759 4.3761 11 6 4.7137 -0.0437 5.3845 12 6 6.0853 0.1179 5.3447 13 6 6.6749 0.7976 4.2868 14 7 8.0642 0.9608 4.2462 15 6 8.5964 2.0738 3.7035 16 8 7.8707 2.9773 3.3352 17 7 9.9328 2.1854 3.5693 18 6 10.5112 3.3950 2.9789 19 6 12.0124 3.2680 2.9431 20 1 12.4881 2.3754 3.3218 21 6 12.7787 4.2914 2.4268 22 7 12.1996 5.3785 1.9662 23 14 14.6395 4.1337 2.3818 24 1 15.0166 2.9544 1.5619 25 1 15.2259 5.3604 1.7846 26 1 15.1552 3.9612 3.7636 27 6 5.8845 1.3152 3.2701 28 1 -0.3633 -1.0226 0.1019 29 1 -0.3633 0.5995 0.8346 30 1 -0.3633 0.4230 -0.9366 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.4855 1.9499 -1.3194 34 1 1.7558 3.1720 -1.0727 35 1 3.3731 1.6485 -2.2560 36 1 2.0191 0.5466 -2.6040 37 1 2.0304 2.1880 -3.2925 38 1 0.5397 2.0060 1.3554 39 1 1.9006 3.1355 1.1553 40 1 2.1122 0.3809 2.4502 41 1 1.9587 1.9102 3.3479 42 1 2.8523 0.3525 4.4126 43 1 4.2569 -0.5725 6.2080 44 1 6.6993 -0.2850 6.1366 45 1 8.6441 0.2729 4.6085 46 1 10.5116 1.4645 3.8629 47 1 10.1331 3.5206 1.9643 48 1 10.2338 4.2610 3.5799 49 1 12.7386 6.0984 1.6026 50 1 6.3405 1.8441 2.4462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903462329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:14 Heat of formation + Delta-G solvation = -58.509612 kcal Electronic energy + Delta-G solvation = -28356.584850 eV Core-core repulsion = 24383.427044 eV Total energy + Delta-G solvation = -3973.157807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70988 -40.73216 -39.43839 -38.24909 -36.23369 -35.49605 -34.34505 -32.88724 -31.98364 -31.02900 -30.35809 -28.89447 -28.43806 -25.39914 -25.05678 -23.91934 -23.66104 -22.55309 -21.74476 -20.61668 -19.91736 -19.49976 -18.08221 -17.61628 -17.40047 -17.23543 -16.78156 -16.75378 -16.52451 -16.24114 -15.98285 -15.64336 -15.12328 -14.99781 -14.77403 -14.49422 -14.16926 -14.11704 -14.04215 -13.96230 -13.66607 -13.26883 -13.01954 -13.00606 -12.91747 -12.68082 -12.62746 -12.53657 -12.35443 -12.23696 -12.12494 -11.96464 -11.70427 -11.51435 -11.41101 -11.23810 -11.06638 -10.80098 -9.94486 -9.31218 -9.15498 -8.91792 -8.28686 -6.45829 0.35557 0.54841 1.43201 1.48367 1.55910 1.68755 2.09738 2.32673 2.40483 2.90875 2.94571 3.06183 3.42070 3.84150 3.95454 4.00613 4.08226 4.17727 4.26618 4.28365 4.33250 4.35588 4.38213 4.45284 4.49007 4.60534 4.63439 4.64987 4.71948 4.80091 4.90511 4.99726 5.05772 5.09697 5.12118 5.23511 5.24802 5.34888 5.38505 5.40578 5.41836 5.44743 5.54803 5.65076 5.81691 5.95890 6.13346 6.19071 6.19452 6.61644 6.64865 7.16091 7.24739 7.58557 8.83501 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002221 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.315071 B =12602.833171 C =14404.832993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.043 3.957 3 N -0.555 5.555 4 C 0.047 3.953 5 C -0.145 4.145 6 C 0.052 3.948 7 C 0.058 3.942 8 O -0.324 6.324 9 C 0.139 3.861 10 C -0.228 4.228 11 C -0.051 4.051 12 C -0.185 4.185 13 C 0.194 3.806 14 N -0.672 5.672 15 C 0.689 3.311 16 O -0.626 6.626 17 N -0.714 5.714 18 C 0.285 3.715 19 C -0.556 4.556 20 H 0.086 0.914 21 C 0.003 3.997 22 N -0.931 5.931 23 Si 0.988 3.012 24 H -0.262 1.262 25 H -0.286 1.286 26 H -0.261 1.261 27 C -0.195 4.195 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.155 0.845 43 H 0.170 0.830 44 H 0.156 0.844 45 H 0.425 0.575 46 H 0.408 0.592 47 H -0.014 1.014 48 H -0.012 1.012 49 H 0.269 0.731 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.017 -16.605 2.765 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.084 4.084 3 N -0.279 5.279 4 C -0.081 4.081 5 C -0.203 4.203 6 C -0.076 4.076 7 C -0.016 4.016 8 O -0.238 6.238 9 C 0.092 3.908 10 C -0.247 4.247 11 C -0.069 4.069 12 C -0.206 4.206 13 C 0.098 3.902 14 N -0.322 5.322 15 C 0.389 3.611 16 O -0.506 6.506 17 N -0.368 5.368 18 C 0.162 3.838 19 C -0.594 4.594 20 H 0.104 0.896 21 C -0.197 4.197 22 N -0.569 5.569 23 Si 0.811 3.189 24 H -0.186 1.186 25 H -0.211 1.211 26 H -0.185 1.185 27 C -0.217 4.217 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.172 0.828 43 H 0.187 0.813 44 H 0.173 0.827 45 H 0.264 0.736 46 H 0.244 0.756 47 H 0.004 0.996 48 H 0.006 0.994 49 H 0.078 0.922 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.949 -15.477 2.116 29.436 hybrid contribution 0.636 0.121 -0.182 0.672 sum -24.313 -15.357 1.935 28.822 Atomic orbital electron populations 1.22366 0.96730 1.03189 1.02225 1.22234 0.93910 0.89541 1.02735 1.62171 1.60682 1.02969 1.02078 1.22141 0.98075 0.97871 0.89967 1.21740 1.00252 1.01374 0.96901 1.22244 0.98225 0.98492 0.88602 1.23124 0.77669 1.01688 0.99161 1.86192 1.19921 1.73694 1.43975 1.18878 0.89754 0.93453 0.88668 1.21456 1.01727 1.05477 0.96066 1.21145 0.91995 0.95980 0.97768 1.21076 0.96343 1.05742 0.97454 1.17452 0.81741 0.97310 0.93670 1.42453 1.05627 1.20800 1.63277 1.16315 0.83094 0.82653 0.79024 1.90898 1.60774 1.41790 1.57135 1.45316 1.03908 1.22516 1.65049 1.18462 0.92970 0.81406 0.90947 1.21563 0.90491 1.04561 1.42808 0.89569 1.26099 1.05375 0.94243 0.93978 1.70139 1.38460 1.07570 1.40755 0.85159 0.76830 0.77771 0.79147 1.18642 1.21125 1.18510 1.20270 0.92370 1.07982 1.01068 0.90976 0.91894 0.92259 0.90916 0.90968 0.92691 0.91638 0.93961 0.92358 0.91208 0.89665 0.90906 0.90484 0.90077 0.82782 0.81302 0.82673 0.73563 0.75617 0.99641 0.99424 0.92200 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 9.24 71.98 0.67 -1.25 16 2 C 0.04 0.66 5.71 86.30 0.49 1.16 16 3 N -0.55 -10.81 4.62 -896.22 -4.14 -14.95 16 4 C 0.05 0.80 5.53 86.30 0.48 1.27 16 5 C -0.14 -2.52 9.83 71.98 0.71 -1.81 16 6 C 0.05 0.89 5.16 86.30 0.45 1.34 16 7 C 0.06 1.10 4.80 71.98 0.35 1.44 16 8 O -0.32 -9.86 10.08 -92.41 -0.93 -10.79 16 9 C 0.14 4.27 6.68 22.49 0.15 4.42 16 10 C -0.23 -4.90 9.04 22.39 0.20 -4.70 16 11 C -0.05 -0.93 10.03 22.24 0.22 -0.71 16 12 C -0.19 -4.16 9.96 22.41 0.22 -3.94 16 13 C 0.19 6.21 6.28 38.14 0.24 6.45 16 14 N -0.67 -21.78 5.35 -317.22 -1.70 -23.48 16 15 C 0.69 30.59 8.30 179.05 1.49 32.08 16 16 O -0.63 -34.33 14.01 -4.00 -0.06 -34.39 16 17 N -0.71 -31.79 5.55 -482.29 -2.68 -34.47 16 18 C 0.29 16.23 5.43 85.63 0.46 16.69 16 19 C -0.56 -30.78 9.28 25.60 0.24 -30.54 16 20 H 0.09 4.26 7.60 -2.91 -0.02 4.23 16 21 C 0.00 0.15 5.46 84.66 0.46 0.62 16 22 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 23 Si 0.99 42.80 29.54 68.60 2.03 44.83 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 27 C -0.20 -7.39 8.59 22.49 0.19 -7.19 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.58 6.11 -2.39 -0.01 0.56 16 30 H 0.06 0.61 6.48 -2.39 -0.02 0.60 16 31 H 0.07 1.17 6.79 -2.39 -0.02 1.15 16 32 H 0.07 1.13 6.22 -2.39 -0.01 1.11 16 33 H 0.06 0.74 5.90 -2.39 -0.01 0.72 16 34 H 0.07 1.19 7.82 -2.39 -0.02 1.17 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.91 6.98 -2.39 -0.02 0.89 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 0.98 6.01 -2.39 -0.01 0.96 16 39 H 0.07 1.45 7.87 -2.39 -0.02 1.43 16 40 H 0.08 1.18 5.80 -2.39 -0.01 1.17 16 41 H 0.08 1.21 7.65 -2.39 -0.02 1.19 16 42 H 0.15 2.24 6.29 -2.91 -0.02 2.22 16 43 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 45 H 0.43 9.76 8.83 -92.71 -0.82 8.94 16 46 H 0.41 14.63 8.34 -92.71 -0.77 13.86 16 47 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 48 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 49 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 50 H 0.10 4.54 6.39 -2.91 -0.02 4.53 16 Total: -1.00 -81.35 399.29 -0.80 -82.15 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.62 Total: 32.71 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 7.02 Total: 15.33 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -8.23 Total: -129.84 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.99 Total: -45.18 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -81.35 -0.80 -82.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903462329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.638 kcal (2) G-P(sol) polarization free energy of solvation -81.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds