Wall clock time and date at job start Tue Mar 31 2020 19:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47079 * 2 1 4 4 C 1.46506 * 119.99418 * 268.79506 * 3 2 1 5 5 C 1.50700 * 109.47238 * 269.99599 * 4 3 2 6 6 H 1.08002 * 119.99860 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99625 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00326 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99493 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47294 * 90.00788 * 9 7 5 11 11 H 1.48508 * 109.46887 * 210.00530 * 9 7 5 12 12 H 1.48503 * 109.47251 * 330.00264 * 9 7 5 13 13 C 1.34768 * 120.00404 * 88.79783 * 3 2 1 14 14 O 1.21700 * 120.00303 * 174.95094 * 13 3 2 15 15 C 1.46675 * 120.00008 * 354.95279 * 13 3 2 16 16 C 1.37871 * 126.23637 * 351.74219 * 15 13 3 17 17 C 1.39833 * 107.08952 * 180.02562 * 16 15 13 18 18 C 1.35450 * 107.86594 * 359.75769 * 17 16 15 19 19 N 1.35539 * 108.86899 * 0.39566 * 18 17 16 20 20 C 1.46497 * 125.67556 * 179.86313 * 19 18 17 21 21 C 1.53002 * 109.47516 * 261.89777 * 20 19 18 22 22 N 1.46894 * 109.47654 * 185.58700 * 21 20 19 23 23 C 1.47010 * 110.99729 * 293.63829 * 22 21 20 24 24 C 1.53098 * 109.25554 * 177.60551 * 23 22 21 25 25 O 1.43019 * 109.26023 * 56.84546 * 24 23 22 26 26 C 1.43006 * 113.73672 * 301.33031 * 25 24 23 27 27 C 1.47014 * 111.00082 * 169.99774 * 22 21 20 28 28 H 1.09000 * 109.47228 * 67.49509 * 1 2 3 29 29 H 1.09008 * 109.47087 * 187.49660 * 1 2 3 30 30 H 1.08997 * 109.47137 * 307.49349 * 1 2 3 31 31 H 1.08997 * 109.47102 * 239.99382 * 2 1 3 32 32 H 1.09002 * 109.46903 * 119.99615 * 2 1 3 33 33 H 1.08996 * 109.47519 * 30.00614 * 4 3 2 34 34 H 1.09000 * 109.46557 * 150.00278 * 4 3 2 35 35 H 0.97003 * 119.99922 * 179.97438 * 8 7 5 36 36 H 1.08005 * 126.45466 * 0.03555 * 16 15 13 37 37 H 1.08004 * 126.06690 * 180.02562 * 17 16 15 38 38 H 1.07995 * 125.56749 * 180.23733 * 18 17 16 39 39 H 1.08998 * 109.47315 * 21.89843 * 20 19 18 40 40 H 1.09002 * 109.47023 * 141.89578 * 20 19 18 41 41 H 1.09003 * 109.46891 * 305.59066 * 21 20 19 42 42 H 1.08999 * 109.46847 * 65.58317 * 21 20 19 43 43 H 1.09000 * 109.50673 * 297.53737 * 23 22 21 44 44 H 1.09001 * 109.51327 * 57.67228 * 23 22 21 45 45 H 1.08999 * 109.51045 * 296.90762 * 24 23 22 46 46 H 1.09003 * 109.54074 * 176.80254 * 24 23 22 47 47 H 1.08998 * 109.51327 * 298.73129 * 26 25 24 48 48 H 1.09001 * 109.54583 * 178.62442 * 26 25 24 49 49 H 1.08994 * 109.50880 * 302.32934 * 27 22 21 50 50 H 1.08997 * 109.50487 * 62.42120 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2876 2.0628 -1.2686 5 6 3.7192 1.8231 -1.6736 6 1 4.3639 1.2227 -1.0488 7 6 4.2056 2.3695 -2.8424 8 7 3.4204 3.1001 -3.6034 9 14 5.9800 2.0718 -3.3448 10 1 6.0595 0.8448 -4.1774 11 1 6.4746 3.2334 -4.1267 12 1 6.8165 1.9006 -2.1298 13 6 2.2199 2.0247 1.1668 14 8 2.7117 3.1379 1.1708 15 6 1.8464 1.3835 2.4320 16 6 1.1414 0.2071 2.5725 17 6 1.0098 -0.0318 3.9440 18 6 1.6278 0.9775 4.6028 19 7 2.1356 1.8470 3.6956 20 6 2.8747 3.0727 4.0077 21 6 1.9273 4.2720 3.9356 22 7 2.6929 5.5125 4.1163 23 6 3.2487 5.5954 5.4747 24 6 4.0863 6.8708 5.6007 25 8 3.2737 8.0026 5.2781 26 6 2.7167 7.9549 3.9618 27 6 1.8651 6.6906 3.8192 28 1 -0.3634 0.3933 -0.9494 29 1 -0.3634 -1.0190 0.1341 30 1 -0.3633 0.6255 0.8153 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6219 1.6734 -2.0388 34 1 2.1182 3.1329 -1.1490 35 1 3.7628 3.4848 -4.4254 36 1 0.7623 -0.4132 1.7737 37 1 0.5084 -0.8742 4.3974 38 1 1.7014 1.0750 5.6758 39 1 3.2923 2.9995 5.0118 40 1 3.6821 3.2036 3.2871 41 1 1.4343 4.2876 2.9635 42 1 1.1772 4.1901 4.7221 43 1 2.4353 5.6211 6.1998 44 1 3.8786 4.7262 5.6641 45 1 4.9306 6.8211 4.9132 46 1 4.4540 6.9661 6.6224 47 1 3.5211 7.9368 3.2265 48 1 2.0933 8.8339 3.7975 49 1 1.4850 6.6207 2.8001 50 1 1.0292 6.7334 4.5173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906374447.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:33 Heat of formation + Delta-G solvation = 7.460883 kcal Electronic energy + Delta-G solvation = -30263.043561 eV Core-core repulsion = 26292.746449 eV Total energy + Delta-G solvation = -3970.297111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30303 -39.66994 -38.40566 -36.39676 -35.49733 -33.12591 -32.62289 -31.36019 -30.49836 -29.16216 -28.97144 -26.82796 -26.11286 -24.22427 -23.31033 -22.98469 -22.50986 -20.85761 -20.57021 -20.22211 -18.52778 -17.07625 -16.56920 -16.39411 -16.23441 -15.68566 -15.32118 -15.22351 -15.16329 -15.11283 -14.73169 -14.26486 -14.16044 -13.82322 -13.67321 -13.55281 -13.07691 -12.71693 -12.54538 -12.36605 -12.22290 -12.03180 -11.95732 -11.65264 -11.57872 -11.52180 -11.35698 -11.14946 -10.96724 -10.87984 -10.68669 -10.66015 -10.40416 -10.08071 -9.86870 -9.61190 -8.97341 -8.61039 -8.46147 -8.41228 -7.96809 -7.59486 -6.02072 -4.06174 1.90051 2.81709 2.97686 3.31828 3.38315 3.43207 3.61047 3.73140 4.02875 4.11221 4.47606 4.62406 4.65660 4.79399 4.85829 4.96752 5.04481 5.06947 5.15531 5.17042 5.25973 5.32914 5.35716 5.40591 5.46195 5.52924 5.58102 5.61778 5.68690 5.68822 5.78232 5.84335 5.88442 5.93530 6.08601 6.23523 6.34807 6.38168 6.60750 6.75167 6.78943 6.93491 6.95583 7.15314 7.24657 7.41998 7.46079 7.58849 7.94712 8.25603 8.44060 8.92448 9.11372 9.58709 11.05914 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008716 B = 0.003955 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.621559 B = 7078.188463 C = 9340.361543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 N -0.581 5.581 4 C 0.251 3.749 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.569 3.431 14 O -0.540 6.540 15 C -0.027 4.027 16 C -0.180 4.180 17 C -0.211 4.211 18 C -0.004 4.004 19 N -0.411 5.411 20 C 0.110 3.890 21 C 0.054 3.946 22 N -0.527 5.527 23 C 0.013 3.987 24 C 0.064 3.936 25 O -0.388 6.388 26 C 0.064 3.936 27 C 0.022 3.978 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.173 0.827 37 H 0.136 0.864 38 H 0.159 0.841 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.098 0.902 49 H 0.092 0.908 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 -0.418 18.650 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.038 4.038 3 N -0.311 5.311 4 C 0.132 3.868 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.356 3.644 14 O -0.420 6.420 15 C -0.141 4.141 16 C -0.205 4.205 17 C -0.235 4.235 18 C -0.138 4.138 19 N -0.084 5.084 20 C -0.012 4.012 21 C -0.075 4.075 22 N -0.252 5.252 23 C -0.116 4.116 24 C -0.013 4.013 25 O -0.307 6.307 26 C -0.013 4.013 27 C -0.106 4.106 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.189 0.811 37 H 0.154 0.846 38 H 0.177 0.823 39 H 0.099 0.901 40 H 0.131 0.869 41 H 0.112 0.888 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.110 0.890 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.563 0.778 18.292 18.868 hybrid contribution 0.268 -0.543 0.080 0.611 sum -4.294 0.235 18.372 18.869 Atomic orbital electron populations 1.22393 0.96799 1.01600 1.02856 1.22052 0.93527 0.84486 1.03727 1.47927 1.63104 1.13111 1.06993 1.19286 0.96208 0.93595 0.77730 1.21428 0.96508 1.32063 1.06172 0.92460 1.24910 0.97850 0.94940 0.96306 1.69929 1.35788 1.33898 1.13878 0.86515 0.84871 0.77652 0.78494 1.20655 1.21127 1.19937 1.16992 0.79551 0.85467 0.82411 1.90804 1.44506 1.19732 1.86908 1.20611 1.09069 0.98689 0.85741 1.22563 1.03284 0.97088 0.97527 1.20826 1.07715 1.01064 0.93901 1.21867 1.03776 0.93252 0.94865 1.43904 1.41154 1.18272 1.05106 1.21862 0.95394 0.81380 1.02541 1.22317 0.94283 0.88265 1.02608 1.62006 1.36326 1.01766 1.25106 1.22888 0.99192 0.99770 0.89723 1.22650 0.92962 0.84383 1.01330 1.87955 1.67069 1.42919 1.32743 1.22688 0.97119 0.96941 0.84584 1.22766 0.94885 0.90511 1.02474 0.92047 0.91910 0.91850 0.90097 0.89465 0.94843 0.93955 0.92774 0.81064 0.84581 0.82314 0.90106 0.86910 0.88767 0.94963 0.94079 0.89662 0.91955 0.88572 0.91752 0.88345 0.88995 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.55 37.16 0.32 -2.15 16 2 C 0.09 1.44 5.58 -4.04 -0.02 1.42 16 3 N -0.58 -12.56 2.46 -176.61 -0.43 -12.99 16 4 C 0.25 6.55 5.12 -5.19 -0.03 6.53 16 5 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.57 12.30 7.62 -12.86 -0.10 12.20 16 14 O -0.54 -13.34 13.62 5.19 0.07 -13.27 16 15 C -0.03 -0.48 6.72 -81.98 -0.55 -1.03 16 16 C -0.18 -2.65 7.48 -39.12 -0.29 -2.95 16 17 C -0.21 -2.66 10.81 -39.98 -0.43 -3.10 16 18 C 0.00 -0.05 11.36 -16.91 -0.19 -0.24 16 19 N -0.41 -6.18 2.76 -112.87 -0.31 -6.49 16 20 C 0.11 1.54 5.13 -4.04 -0.02 1.52 16 21 C 0.05 0.74 5.10 -3.83 -0.02 0.72 16 22 N -0.53 -6.90 4.73 -234.32 -1.11 -8.00 16 23 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 24 C 0.06 0.64 7.01 37.21 0.26 0.90 16 25 O -0.39 -4.66 10.83 -35.23 -0.38 -5.04 16 26 C 0.06 0.71 7.01 37.21 0.26 0.97 16 27 C 0.02 0.26 5.65 -3.71 -0.02 0.24 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.67 8.11 -51.92 -0.42 0.25 16 30 H 0.06 0.90 6.59 -51.93 -0.34 0.56 16 31 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 32 H 0.09 1.33 4.83 -51.93 -0.25 1.08 16 33 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.17 2.28 3.15 -52.48 -0.17 2.11 16 37 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.08 0.87 6.75 -51.93 -0.35 0.52 16 40 H 0.11 1.94 7.00 -51.93 -0.36 1.58 16 41 H 0.09 1.60 7.15 -51.93 -0.37 1.23 16 42 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 43 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.78 6.50 -51.93 -0.34 0.44 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 50 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -33.59 391.09 -9.85 -43.44 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.02 Total: 3.70 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.28 Total: 1.61 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -1.12 Total: -53.34 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.31 Total: -18.31 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.59 -9.85 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906374447.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.906 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds