Wall clock time and date at job start Tue Mar 31 2020 19:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47079 * 2 1 4 4 C 1.46506 * 119.99418 * 268.79506 * 3 2 1 5 5 C 1.50700 * 109.47238 * 269.99599 * 4 3 2 6 6 H 1.08002 * 119.99860 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99625 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00326 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99493 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47294 * 90.00788 * 9 7 5 11 11 H 1.48508 * 109.46887 * 210.00530 * 9 7 5 12 12 H 1.48503 * 109.47251 * 330.00264 * 9 7 5 13 13 C 1.34768 * 120.00404 * 88.79783 * 3 2 1 14 14 O 1.21700 * 120.00303 * 174.95094 * 13 3 2 15 15 C 1.46675 * 120.00008 * 354.95279 * 13 3 2 16 16 C 1.37871 * 126.23637 * 351.74219 * 15 13 3 17 17 C 1.39833 * 107.08952 * 180.02562 * 16 15 13 18 18 C 1.35450 * 107.86594 * 359.75769 * 17 16 15 19 19 N 1.35539 * 108.86899 * 0.39566 * 18 17 16 20 20 C 1.46497 * 125.67556 * 179.86313 * 19 18 17 21 21 C 1.53002 * 109.47516 * 261.89777 * 20 19 18 22 22 N 1.46894 * 109.47654 * 185.58700 * 21 20 19 23 23 C 1.47010 * 110.99729 * 293.63829 * 22 21 20 24 24 C 1.53098 * 109.25554 * 177.60551 * 23 22 21 25 25 O 1.43019 * 109.26023 * 56.84546 * 24 23 22 26 26 C 1.43006 * 113.73672 * 301.33031 * 25 24 23 27 27 C 1.47014 * 111.00082 * 169.99774 * 22 21 20 28 28 H 1.09000 * 109.47228 * 67.49509 * 1 2 3 29 29 H 1.09008 * 109.47087 * 187.49660 * 1 2 3 30 30 H 1.08997 * 109.47137 * 307.49349 * 1 2 3 31 31 H 1.08997 * 109.47102 * 239.99382 * 2 1 3 32 32 H 1.09002 * 109.46903 * 119.99615 * 2 1 3 33 33 H 1.08996 * 109.47519 * 30.00614 * 4 3 2 34 34 H 1.09000 * 109.46557 * 150.00278 * 4 3 2 35 35 H 0.97003 * 119.99922 * 179.97438 * 8 7 5 36 36 H 1.08005 * 126.45466 * 0.03555 * 16 15 13 37 37 H 1.08004 * 126.06690 * 180.02562 * 17 16 15 38 38 H 1.07995 * 125.56749 * 180.23733 * 18 17 16 39 39 H 1.08998 * 109.47315 * 21.89843 * 20 19 18 40 40 H 1.09002 * 109.47023 * 141.89578 * 20 19 18 41 41 H 1.09003 * 109.46891 * 305.59066 * 21 20 19 42 42 H 1.08999 * 109.46847 * 65.58317 * 21 20 19 43 43 H 1.09000 * 109.50673 * 297.53737 * 23 22 21 44 44 H 1.09001 * 109.51327 * 57.67228 * 23 22 21 45 45 H 1.08999 * 109.51045 * 296.90762 * 24 23 22 46 46 H 1.09003 * 109.54074 * 176.80254 * 24 23 22 47 47 H 1.08998 * 109.51327 * 298.73129 * 26 25 24 48 48 H 1.09001 * 109.54583 * 178.62442 * 26 25 24 49 49 H 1.08994 * 109.50880 * 302.32934 * 27 22 21 50 50 H 1.08997 * 109.50487 * 62.42120 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2876 2.0628 -1.2686 5 6 3.7192 1.8231 -1.6736 6 1 4.3639 1.2227 -1.0488 7 6 4.2056 2.3695 -2.8424 8 7 3.4204 3.1001 -3.6034 9 14 5.9800 2.0718 -3.3448 10 1 6.0595 0.8448 -4.1774 11 1 6.4746 3.2334 -4.1267 12 1 6.8165 1.9006 -2.1298 13 6 2.2199 2.0247 1.1668 14 8 2.7117 3.1379 1.1708 15 6 1.8464 1.3835 2.4320 16 6 1.1414 0.2071 2.5725 17 6 1.0098 -0.0318 3.9440 18 6 1.6278 0.9775 4.6028 19 7 2.1356 1.8470 3.6956 20 6 2.8747 3.0727 4.0077 21 6 1.9273 4.2720 3.9356 22 7 2.6929 5.5125 4.1163 23 6 3.2487 5.5954 5.4747 24 6 4.0863 6.8708 5.6007 25 8 3.2737 8.0026 5.2781 26 6 2.7167 7.9549 3.9618 27 6 1.8651 6.6906 3.8192 28 1 -0.3634 0.3933 -0.9494 29 1 -0.3634 -1.0190 0.1341 30 1 -0.3633 0.6255 0.8153 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6219 1.6734 -2.0388 34 1 2.1182 3.1329 -1.1490 35 1 3.7628 3.4848 -4.4254 36 1 0.7623 -0.4132 1.7737 37 1 0.5084 -0.8742 4.3974 38 1 1.7014 1.0750 5.6758 39 1 3.2923 2.9995 5.0118 40 1 3.6821 3.2036 3.2871 41 1 1.4343 4.2876 2.9635 42 1 1.1772 4.1901 4.7221 43 1 2.4353 5.6211 6.1998 44 1 3.8786 4.7262 5.6641 45 1 4.9306 6.8211 4.9132 46 1 4.4540 6.9661 6.6224 47 1 3.5211 7.9368 3.2265 48 1 2.0933 8.8339 3.7975 49 1 1.4850 6.6207 2.8001 50 1 1.0292 6.7334 4.5173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906374447.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:32 Heat of formation + Delta-G solvation = -15.368709 kcal Electronic energy + Delta-G solvation = -30264.033526 eV Core-core repulsion = 26292.746449 eV Total energy + Delta-G solvation = -3971.287077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48222 -40.60467 -39.98575 -37.52260 -36.96695 -35.07124 -33.93113 -32.25123 -32.07427 -30.48041 -30.02506 -28.70556 -27.11269 -25.23534 -25.10659 -24.39133 -23.58842 -22.20286 -21.54108 -21.40606 -19.84458 -18.67741 -18.25516 -17.57328 -17.23417 -17.14252 -16.82858 -16.35280 -16.33411 -16.10263 -16.01101 -15.86325 -15.51042 -15.06056 -14.78142 -14.68394 -14.49280 -14.21744 -13.79074 -13.59494 -13.45189 -13.34786 -13.27823 -13.12393 -13.02167 -12.73440 -12.65168 -12.56592 -12.41718 -12.33851 -12.19575 -11.99369 -11.77234 -11.71953 -11.56838 -10.79008 -10.65344 -10.64771 -9.66215 -9.51082 -9.43391 -9.04196 -8.22718 -6.37531 0.62982 1.34413 1.37398 1.47743 1.69397 1.93107 2.30329 2.45469 2.56149 2.78367 2.91515 3.06177 3.58446 3.69877 3.76620 3.86163 3.92901 4.09526 4.11764 4.16160 4.19232 4.23538 4.26996 4.38417 4.44916 4.50286 4.52762 4.63457 4.66611 4.70804 4.72792 4.77101 4.82369 4.90222 4.93716 4.98413 5.03786 5.17533 5.26990 5.34434 5.43683 5.57620 5.75394 5.82193 5.87195 5.97953 6.05869 6.07376 6.09100 6.42678 6.69399 6.78961 7.27445 7.48035 8.83901 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008716 B = 0.003955 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.621559 B = 7078.188463 C = 9340.361543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.082 3.918 3 N -0.591 5.591 4 C 0.270 3.730 5 C -0.541 4.541 6 H 0.048 0.952 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.276 1.276 13 C 0.559 3.441 14 O -0.590 6.590 15 C -0.077 4.077 16 C -0.163 4.163 17 C -0.214 4.214 18 C 0.019 3.981 19 N -0.417 5.417 20 C 0.116 3.884 21 C 0.068 3.932 22 N -0.550 5.550 23 C 0.015 3.985 24 C 0.060 3.940 25 O -0.399 6.399 26 C 0.067 3.933 27 C 0.023 3.977 28 H 0.045 0.955 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.025 0.975 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.184 0.816 37 H 0.172 0.828 38 H 0.204 0.796 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.100 0.900 45 H 0.052 0.948 46 H 0.126 0.874 47 H 0.050 0.950 48 H 0.119 0.881 49 H 0.072 0.928 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 -2.625 21.793 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.040 4.040 3 N -0.321 5.321 4 C 0.149 3.851 5 C -0.579 4.579 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.201 1.201 13 C 0.349 3.651 14 O -0.473 6.473 15 C -0.190 4.190 16 C -0.188 4.188 17 C -0.237 4.237 18 C -0.115 4.115 19 N -0.091 5.091 20 C -0.006 4.006 21 C -0.061 4.061 22 N -0.276 5.276 23 C -0.113 4.113 24 C -0.017 4.017 25 O -0.317 6.317 26 C -0.010 4.010 27 C -0.105 4.105 28 H 0.064 0.936 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.043 0.957 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.200 0.800 37 H 0.190 0.810 38 H 0.221 0.779 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.071 0.929 46 H 0.143 0.857 47 H 0.069 0.931 48 H 0.137 0.863 49 H 0.090 0.910 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.658 -1.472 21.438 21.987 hybrid contribution 0.247 0.125 -0.809 0.855 sum -4.411 -1.347 20.629 21.138 Atomic orbital electron populations 1.22306 0.94235 1.04060 1.01926 1.22355 0.95586 0.81777 1.04307 1.47902 1.63691 1.14855 1.05651 1.18691 0.95224 0.91378 0.79847 1.21654 0.97470 1.32326 1.06469 0.93376 1.25809 1.02438 0.94408 0.96173 1.70045 1.37841 1.34500 1.14310 0.85442 0.79068 0.78349 0.78098 1.18613 1.20437 1.20145 1.17656 0.78535 0.85036 0.83829 1.90759 1.46810 1.21902 1.87793 1.20095 1.13173 1.00696 0.85006 1.22799 1.01167 0.95476 0.99397 1.21251 1.07731 1.02177 0.92559 1.22703 1.00829 0.91521 0.96431 1.44057 1.41475 1.18864 1.04752 1.21798 0.94244 0.81363 1.03204 1.22068 0.94502 0.88848 1.00677 1.61981 1.36644 1.01613 1.27348 1.22965 0.99565 1.00574 0.88158 1.22841 0.92355 0.83773 1.02712 1.87939 1.67295 1.43829 1.32662 1.22696 0.96811 0.97225 0.84266 1.22733 0.95348 0.90847 1.01587 0.93554 0.87602 0.92184 0.90881 0.87394 0.95719 0.98616 0.92378 0.79958 0.81029 0.77899 0.86079 0.91125 0.93216 0.93176 0.93033 0.88146 0.92930 0.85664 0.93137 0.86349 0.90974 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.48 8.55 71.98 0.62 -3.86 16 2 C 0.08 2.76 5.58 86.38 0.48 3.24 16 3 N -0.59 -27.11 2.46 -830.88 -2.04 -29.15 16 4 C 0.27 15.18 5.12 85.63 0.44 15.62 16 5 C -0.54 -32.38 9.39 25.60 0.24 -32.14 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.63 5.46 84.66 0.46 1.10 16 8 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 9 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 C 0.56 25.79 7.62 86.45 0.66 26.45 16 14 O -0.59 -31.91 13.62 -4.35 -0.06 -31.97 16 15 C -0.08 -2.72 6.72 40.35 0.27 -2.45 16 16 C -0.16 -4.43 7.48 22.57 0.17 -4.26 16 17 C -0.21 -4.44 10.81 22.01 0.24 -4.20 16 18 C 0.02 0.40 11.36 83.48 0.95 1.35 16 19 N -0.42 -12.02 2.76 -511.02 -1.41 -13.43 16 20 C 0.12 3.20 5.13 86.38 0.44 3.64 16 21 C 0.07 1.91 5.10 86.31 0.44 2.35 16 22 N -0.55 -14.74 4.73 -895.24 -4.23 -18.97 16 23 C 0.01 0.29 5.44 86.31 0.47 0.76 16 24 C 0.06 1.13 7.01 72.01 0.50 1.63 16 25 O -0.40 -9.22 10.83 -148.98 -1.61 -10.84 16 26 C 0.07 1.52 7.01 72.02 0.50 2.03 16 27 C 0.02 0.58 5.65 86.31 0.49 1.07 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.11 1.93 8.11 -2.38 -0.02 1.91 16 30 H 0.06 1.66 6.59 -2.39 -0.02 1.64 16 31 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16 32 H 0.11 3.18 4.83 -2.39 -0.01 3.17 16 33 H 0.02 1.40 8.07 -2.39 -0.02 1.39 16 34 H 0.00 -0.28 7.50 -2.39 -0.02 -0.29 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.18 4.37 3.15 -2.91 -0.01 4.36 16 37 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.12 2.28 6.75 -2.39 -0.02 2.26 16 40 H 0.07 2.58 7.00 -2.39 -0.02 2.57 16 41 H 0.05 1.85 7.15 -2.39 -0.02 1.83 16 42 H 0.05 1.20 8.12 -2.39 -0.02 1.18 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.10 1.59 6.50 -2.39 -0.02 1.58 16 45 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 50 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -79.98 391.09 1.26 -78.72 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.93 Total: 21.99 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 7.37 Total: 12.30 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -7.40 Total: -118.41 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.67 Total: -42.80 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -79.98 1.26 -78.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906374447.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.355 kcal (2) G-P(sol) polarization free energy of solvation -79.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds