Wall clock time and date at job start Tue Mar 31 2020 19:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46493 * 109.47290 * 2 1 4 4 C 1.46496 * 120.00297 * 270.00336 * 3 2 1 5 5 C 1.50709 * 109.47001 * 270.00103 * 4 3 2 6 6 C 1.50697 * 120.00049 * 180.02562 * 5 4 3 7 7 O 1.20763 * 119.99657 * 359.97438 * 5 4 3 8 8 C 1.34784 * 119.99962 * 90.00051 * 3 2 1 9 9 O 1.21281 * 120.00093 * 179.97438 * 8 3 2 10 10 C 1.50696 * 119.99865 * 0.02562 * 8 3 2 11 11 C 1.53000 * 109.47110 * 179.97438 * 10 8 3 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 8 13 13 C 1.39862 * 126.04094 * 269.68901 * 12 11 10 14 14 C 1.50702 * 125.90180 * 0.02562 * 13 12 11 15 15 N 1.30842 * 108.19992 * 179.81747 * 13 12 11 16 16 N 1.40084 * 108.20663 * 0.44091 * 15 13 12 17 17 C 1.46495 * 126.04013 * 179.73793 * 16 15 13 18 18 C 1.50699 * 109.47131 * 269.98016 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00208 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00055 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99907 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46872 * 89.99940 * 22 20 18 24 24 H 1.48495 * 109.47211 * 210.00060 * 22 20 18 25 25 H 1.48505 * 109.47239 * 330.00326 * 22 20 18 26 26 C 1.34950 * 107.92381 * 359.71898 * 16 15 13 27 27 C 1.50694 * 126.12576 * 179.97438 * 26 16 15 28 28 H 1.09000 * 109.46938 * 299.99945 * 1 2 3 29 29 H 1.08999 * 109.46962 * 59.99467 * 1 2 3 30 30 H 1.09001 * 109.47483 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46938 * 240.00055 * 2 1 3 32 32 H 1.08999 * 109.46962 * 120.00533 * 2 1 3 33 33 H 1.09000 * 109.47287 * 29.99656 * 4 3 2 34 34 H 1.09002 * 109.47320 * 150.00258 * 4 3 2 35 35 H 1.08993 * 109.47148 * 59.99736 * 6 5 4 36 36 H 1.08999 * 109.46742 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.46995 * 299.99681 * 6 5 4 38 38 H 1.09000 * 109.47543 * 59.99570 * 10 8 3 39 39 H 1.09008 * 109.47338 * 300.00084 * 10 8 3 40 40 H 1.09000 * 109.46884 * 60.00335 * 11 10 8 41 41 H 1.09000 * 109.46955 * 299.99651 * 11 10 8 42 42 H 1.08998 * 109.47393 * 89.99256 * 14 13 12 43 43 H 1.09001 * 109.46747 * 209.99996 * 14 13 12 44 44 H 1.08998 * 109.46776 * 329.99757 * 14 13 12 45 45 H 1.09001 * 109.47188 * 29.97306 * 17 16 15 46 46 H 1.08997 * 109.47530 * 149.97532 * 17 16 15 47 47 H 0.96999 * 119.99548 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.47170 * 270.02464 * 27 26 16 49 49 H 1.09004 * 109.47112 * 30.02444 * 27 26 16 50 50 H 1.09003 * 109.46820 * 150.02019 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 6 4.1926 2.4421 -2.9866 7 8 4.4206 1.1593 -1.0239 8 6 2.2431 2.0165 1.1673 9 8 2.6479 3.1598 1.1673 10 6 1.9925 1.3059 2.4723 11 6 2.3244 2.2430 3.6353 12 6 2.0732 1.5326 4.9404 13 6 0.8716 1.5270 5.6563 14 6 -0.3990 2.2312 5.2556 15 7 1.0401 0.8011 6.7318 16 7 2.3591 0.3295 6.7393 17 6 2.9659 -0.5170 7.7696 18 6 3.5850 0.3524 8.8335 19 1 3.5322 1.4279 8.7502 20 6 4.2190 -0.2252 9.9131 21 7 4.7597 0.5336 10.8413 22 14 4.3098 -2.0853 10.0574 23 1 5.5422 -2.5741 9.3883 24 1 4.3394 -2.4697 11.4914 25 1 3.1201 -2.6910 9.4070 26 6 2.9720 0.7922 5.6296 27 6 4.4014 0.5315 5.2299 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5818 1.6877 -2.0283 34 1 2.0957 3.1410 -1.1383 35 1 4.1112 3.5276 -2.9317 36 1 5.2359 2.1625 -3.1335 37 1 3.5972 2.0748 -3.8224 38 1 2.6229 0.4186 2.5299 39 1 0.9446 1.0113 2.5303 40 1 1.6941 3.1305 3.5779 41 1 3.3724 2.5371 3.5771 42 1 -1.0075 1.5638 4.6454 43 1 -0.9549 2.5142 6.1495 44 1 -0.1537 3.1251 4.6821 45 1 2.1997 -1.1495 8.2178 46 1 3.7358 -1.1430 7.3185 47 1 5.2060 0.1272 11.6006 48 1 5.0428 1.3076 5.6477 49 1 4.7134 -0.4413 5.6101 50 1 4.4820 0.5397 4.1429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908395364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:20 Heat of formation + Delta-G solvation = -12.918252 kcal Electronic energy + Delta-G solvation = -29283.443397 eV Core-core repulsion = 25312.262580 eV Total energy + Delta-G solvation = -3971.180817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78052 -40.44125 -39.01719 -36.14479 -34.47920 -33.41977 -32.47704 -31.88142 -30.55713 -30.45390 -29.29074 -27.90277 -26.32092 -26.07668 -24.00602 -23.24350 -21.87669 -20.45703 -19.01395 -18.84826 -18.66560 -17.30630 -17.11394 -16.79313 -16.45665 -15.64654 -15.33028 -15.23651 -14.83579 -14.56368 -14.19990 -14.11892 -13.85221 -13.69943 -13.27772 -12.98236 -12.92580 -12.82474 -12.71088 -12.69403 -12.47714 -12.39955 -12.32887 -12.25651 -11.96722 -11.91295 -11.81690 -11.53507 -11.44238 -11.28543 -10.97483 -10.75033 -10.66375 -10.35708 -10.20030 -9.88437 -9.67284 -9.64214 -8.90287 -8.77887 -8.21915 -7.49685 -6.25634 -4.28616 1.63883 2.50706 2.62567 2.74018 3.14072 3.21929 3.22969 3.34542 3.50671 3.76987 4.21830 4.35746 4.55328 4.65255 4.77480 4.84499 4.95057 5.00706 5.02584 5.05039 5.10224 5.22143 5.24814 5.31525 5.33502 5.35490 5.48164 5.56575 5.60978 5.70602 5.79314 5.87470 5.91600 5.97183 5.97942 6.03317 6.14692 6.22642 6.31488 6.38899 6.47190 6.52678 6.82524 6.95313 7.10438 7.19240 7.29766 7.44272 7.87191 8.05574 8.32222 8.60966 8.79960 9.29562 10.86956 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.002537 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.790680 B =11032.501541 C =11632.861031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.610 5.610 4 C 0.064 3.936 5 C 0.333 3.667 6 C -0.203 4.203 7 O -0.444 6.444 8 C 0.521 3.479 9 O -0.538 6.538 10 C -0.130 4.130 11 C -0.012 4.012 12 C -0.265 4.265 13 C 0.054 3.946 14 C -0.065 4.065 15 N -0.294 5.294 16 N -0.325 5.325 17 C 0.230 3.770 18 C -0.540 4.540 19 H 0.080 0.920 20 C 0.079 3.921 21 N -0.886 5.886 22 Si 0.873 3.127 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.264 1.264 26 C 0.097 3.903 27 C -0.088 4.088 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.269 0.731 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 -0.323 -29.292 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 N -0.343 5.343 4 C -0.060 4.060 5 C 0.206 3.794 6 C -0.261 4.261 7 O -0.316 6.316 8 C 0.311 3.689 9 O -0.414 6.414 10 C -0.170 4.170 11 C -0.051 4.051 12 C -0.277 4.277 13 C -0.110 4.110 14 C -0.123 4.123 15 N -0.118 5.118 16 N -0.104 5.104 17 C 0.111 3.889 18 C -0.578 4.578 19 H 0.098 0.902 20 C -0.126 4.126 21 N -0.523 5.523 22 Si 0.698 3.302 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.188 1.188 26 C -0.034 4.034 27 C -0.146 4.146 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.079 0.921 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.241 -0.657 -27.509 28.453 hybrid contribution 0.511 -0.697 -0.484 0.990 sum -6.731 -1.353 -27.993 28.823 Atomic orbital electron populations 1.22239 0.95543 1.02625 1.02696 1.21586 0.94343 0.81889 1.03799 1.47790 1.66842 1.14627 1.05051 1.21880 0.95631 1.01218 0.87285 1.25233 0.90229 0.77410 0.86490 1.22296 1.03610 1.03305 0.96856 1.90439 1.57884 1.30391 1.52889 1.21068 0.75810 0.86556 0.85472 1.90678 1.45104 1.18241 1.87384 1.21782 1.03791 1.00366 0.91092 1.19419 1.02065 0.95707 0.87897 1.19342 0.94245 1.12242 1.01828 1.21956 0.96156 0.99431 0.93475 1.20035 0.92259 0.98764 1.01269 1.77274 0.96937 1.17080 1.20480 1.48772 1.07098 1.37727 1.16796 1.19958 0.93395 0.89922 0.85625 1.21162 1.36289 0.95302 1.05040 0.90162 1.24814 0.94461 0.98261 0.95024 1.69875 1.35911 1.35488 1.11041 0.86904 0.79236 0.85664 0.78348 1.19643 1.20466 1.18832 1.20774 0.95713 0.97864 0.89006 1.20378 0.90051 1.03063 1.01118 0.91857 0.92420 0.91225 0.90639 0.89592 0.87373 0.86511 0.88778 0.89941 0.89016 0.89015 0.88926 0.91176 0.91325 0.91585 0.91458 0.91140 0.93298 0.93977 0.92127 0.90083 0.91184 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.11 0.74 5.93 -4.04 -0.02 0.72 16 3 N -0.61 -5.69 1.96 -175.06 -0.34 -6.03 16 4 C 0.06 0.45 5.82 -5.19 -0.03 0.42 16 5 C 0.33 2.82 7.33 -29.03 -0.21 2.60 16 6 C -0.20 -0.96 10.26 36.00 0.37 -0.59 16 7 O -0.44 -5.81 17.16 6.00 0.10 -5.71 16 8 C 0.52 6.52 7.67 -10.98 -0.08 6.43 16 9 O -0.54 -8.49 15.56 5.56 0.09 -8.40 16 10 C -0.13 -1.57 4.23 -27.89 -0.12 -1.69 16 11 C -0.01 -0.18 4.41 -27.88 -0.12 -0.30 16 12 C -0.26 -4.76 5.35 -105.05 -0.56 -5.32 16 13 C 0.05 1.03 7.22 -82.41 -0.59 0.44 16 14 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 15 N -0.29 -6.70 12.58 33.67 0.42 -6.28 16 16 N -0.32 -7.50 3.60 -58.32 -0.21 -7.71 16 17 C 0.23 5.61 5.07 -5.20 -0.03 5.58 16 18 C -0.54 -15.36 9.94 -34.44 -0.34 -15.70 16 19 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 22 Si 0.87 20.40 27.47 -169.99 -4.67 15.74 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 26 C 0.10 1.94 6.93 -82.26 -0.57 1.37 16 27 C -0.09 -1.48 9.72 36.00 0.35 -1.13 16 28 H 0.06 0.41 7.22 -51.93 -0.38 0.04 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.09 0.64 6.44 -51.93 -0.33 0.31 16 33 H 0.11 0.36 8.07 -51.93 -0.42 -0.06 16 34 H 0.12 0.85 7.42 -51.93 -0.39 0.46 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.09 1.07 7.40 -51.93 -0.38 0.69 16 39 H 0.09 0.97 7.19 -51.92 -0.37 0.60 16 40 H 0.07 1.03 7.20 -51.93 -0.37 0.66 16 41 H 0.07 1.09 7.73 -51.93 -0.40 0.69 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.87 7.25 -51.93 -0.38 0.49 16 45 H 0.05 1.21 7.20 -51.93 -0.37 0.83 16 46 H 0.04 0.95 6.48 -51.93 -0.34 0.61 16 47 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 49 H 0.07 1.15 7.08 -51.93 -0.37 0.78 16 50 H 0.07 1.02 7.77 -51.93 -0.40 0.62 16 LS Contribution 412.90 15.07 6.22 6.22 Total: -1.00 -36.95 412.90 -7.23 -44.18 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.29 Total: 0.05 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.32 Total: -6.15 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.64 Total: -45.93 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.19 Total: -14.11 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.95 -7.23 -44.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908395364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.260 kcal (2) G-P(sol) polarization free energy of solvation -36.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds