Wall clock time and date at job start Tue Mar 31 2020 19:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46493 * 109.47290 * 2 1 4 4 C 1.46496 * 120.00297 * 270.00336 * 3 2 1 5 5 C 1.50709 * 109.47001 * 270.00103 * 4 3 2 6 6 C 1.50697 * 120.00049 * 180.02562 * 5 4 3 7 7 O 1.20763 * 119.99657 * 359.97438 * 5 4 3 8 8 C 1.34784 * 119.99962 * 90.00051 * 3 2 1 9 9 O 1.21281 * 120.00093 * 179.97438 * 8 3 2 10 10 C 1.50696 * 119.99865 * 0.02562 * 8 3 2 11 11 C 1.53000 * 109.47110 * 179.97438 * 10 8 3 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 8 13 13 C 1.39862 * 126.04094 * 269.68901 * 12 11 10 14 14 C 1.50702 * 125.90180 * 0.02562 * 13 12 11 15 15 N 1.30842 * 108.19992 * 179.81747 * 13 12 11 16 16 N 1.40084 * 108.20663 * 0.44091 * 15 13 12 17 17 C 1.46495 * 126.04013 * 179.73793 * 16 15 13 18 18 C 1.50699 * 109.47131 * 269.98016 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00208 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00055 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99907 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46872 * 89.99940 * 22 20 18 24 24 H 1.48495 * 109.47211 * 210.00060 * 22 20 18 25 25 H 1.48505 * 109.47239 * 330.00326 * 22 20 18 26 26 C 1.34950 * 107.92381 * 359.71898 * 16 15 13 27 27 C 1.50694 * 126.12576 * 179.97438 * 26 16 15 28 28 H 1.09000 * 109.46938 * 299.99945 * 1 2 3 29 29 H 1.08999 * 109.46962 * 59.99467 * 1 2 3 30 30 H 1.09001 * 109.47483 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46938 * 240.00055 * 2 1 3 32 32 H 1.08999 * 109.46962 * 120.00533 * 2 1 3 33 33 H 1.09000 * 109.47287 * 29.99656 * 4 3 2 34 34 H 1.09002 * 109.47320 * 150.00258 * 4 3 2 35 35 H 1.08993 * 109.47148 * 59.99736 * 6 5 4 36 36 H 1.08999 * 109.46742 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.46995 * 299.99681 * 6 5 4 38 38 H 1.09000 * 109.47543 * 59.99570 * 10 8 3 39 39 H 1.09008 * 109.47338 * 300.00084 * 10 8 3 40 40 H 1.09000 * 109.46884 * 60.00335 * 11 10 8 41 41 H 1.09000 * 109.46955 * 299.99651 * 11 10 8 42 42 H 1.08998 * 109.47393 * 89.99256 * 14 13 12 43 43 H 1.09001 * 109.46747 * 209.99996 * 14 13 12 44 44 H 1.08998 * 109.46776 * 329.99757 * 14 13 12 45 45 H 1.09001 * 109.47188 * 29.97306 * 17 16 15 46 46 H 1.08997 * 109.47530 * 149.97532 * 17 16 15 47 47 H 0.96999 * 119.99548 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.47170 * 270.02464 * 27 26 16 49 49 H 1.09004 * 109.47112 * 30.02444 * 27 26 16 50 50 H 1.09003 * 109.46820 * 150.02019 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 6 4.1926 2.4421 -2.9866 7 8 4.4206 1.1593 -1.0239 8 6 2.2431 2.0165 1.1673 9 8 2.6479 3.1598 1.1673 10 6 1.9925 1.3059 2.4723 11 6 2.3244 2.2430 3.6353 12 6 2.0732 1.5326 4.9404 13 6 0.8716 1.5270 5.6563 14 6 -0.3990 2.2312 5.2556 15 7 1.0401 0.8011 6.7318 16 7 2.3591 0.3295 6.7393 17 6 2.9659 -0.5170 7.7696 18 6 3.5850 0.3524 8.8335 19 1 3.5322 1.4279 8.7502 20 6 4.2190 -0.2252 9.9131 21 7 4.7597 0.5336 10.8413 22 14 4.3098 -2.0853 10.0574 23 1 5.5422 -2.5741 9.3883 24 1 4.3394 -2.4697 11.4914 25 1 3.1201 -2.6910 9.4070 26 6 2.9720 0.7922 5.6296 27 6 4.4014 0.5315 5.2299 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5818 1.6877 -2.0283 34 1 2.0957 3.1410 -1.1383 35 1 4.1112 3.5276 -2.9317 36 1 5.2359 2.1625 -3.1335 37 1 3.5972 2.0748 -3.8224 38 1 2.6229 0.4186 2.5299 39 1 0.9446 1.0113 2.5303 40 1 1.6941 3.1305 3.5779 41 1 3.3724 2.5371 3.5771 42 1 -1.0075 1.5638 4.6454 43 1 -0.9549 2.5142 6.1495 44 1 -0.1537 3.1251 4.6821 45 1 2.1997 -1.1495 8.2178 46 1 3.7358 -1.1430 7.3185 47 1 5.2060 0.1272 11.6006 48 1 5.0428 1.3076 5.6477 49 1 4.7134 -0.4413 5.6101 50 1 4.4820 0.5397 4.1429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908395364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:19 Heat of formation + Delta-G solvation = -36.767520 kcal Electronic energy + Delta-G solvation = -29284.477579 eV Core-core repulsion = 25312.262580 eV Total energy + Delta-G solvation = -3972.214999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22475 -41.33244 -39.84529 -36.92220 -36.12474 -34.91278 -34.28216 -32.58442 -31.86846 -31.07766 -30.76375 -28.84583 -27.79204 -27.38834 -25.11506 -24.17543 -23.48266 -21.18548 -20.35033 -20.19585 -19.75081 -19.26720 -18.20122 -17.51211 -17.26834 -17.15994 -16.40457 -16.16681 -16.06878 -15.79835 -15.35741 -15.00976 -14.84707 -14.79753 -14.68170 -14.46881 -14.15017 -13.93202 -13.82809 -13.54568 -13.48459 -13.35239 -13.24790 -13.17105 -13.08801 -12.95627 -12.85805 -12.83166 -12.59020 -12.50475 -12.42167 -12.09496 -11.97281 -11.83972 -11.78560 -11.20213 -11.07968 -10.92595 -10.80271 -9.85860 -9.61082 -9.03861 -8.43963 -6.55125 1.02437 1.11092 1.30716 1.33456 1.43967 1.60918 1.80791 1.88236 2.05581 2.23371 2.88026 3.22283 3.57241 3.80963 3.88519 4.02249 4.15102 4.17614 4.19055 4.26799 4.31306 4.38974 4.41435 4.50587 4.53219 4.59113 4.61377 4.64699 4.68940 4.70995 4.73384 4.80226 4.85319 4.88017 4.92721 4.98295 5.05804 5.10300 5.19787 5.20775 5.25500 5.38622 5.42739 5.47281 5.54470 5.90634 6.04024 6.31891 6.38994 6.49032 6.58991 7.03710 7.09221 7.17189 8.72993 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.002537 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.790680 B =11032.501541 C =11632.861031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.057 3.943 5 C 0.333 3.667 6 C -0.198 4.198 7 O -0.501 6.501 8 C 0.518 3.482 9 O -0.580 6.580 10 C -0.122 4.122 11 C -0.004 4.004 12 C -0.256 4.256 13 C 0.058 3.942 14 C -0.063 4.063 15 N -0.344 5.344 16 N -0.354 5.354 17 C 0.241 3.759 18 C -0.551 4.551 19 H 0.020 0.980 20 C 0.019 3.981 21 N -0.938 5.938 22 Si 0.953 3.047 23 H -0.250 1.250 24 H -0.276 1.276 25 H -0.245 1.245 26 C 0.079 3.921 27 C -0.085 4.085 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.274 0.726 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.878 -2.096 -32.694 33.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.337 5.337 4 C -0.066 4.066 5 C 0.210 3.790 6 C -0.255 4.255 7 O -0.377 6.377 8 C 0.308 3.692 9 O -0.460 6.460 10 C -0.161 4.161 11 C -0.043 4.043 12 C -0.268 4.268 13 C -0.107 4.107 14 C -0.122 4.122 15 N -0.168 5.168 16 N -0.134 5.134 17 C 0.121 3.879 18 C -0.589 4.589 19 H 0.038 0.962 20 C -0.180 4.180 21 N -0.576 5.576 22 Si 0.773 3.227 23 H -0.174 1.174 24 H -0.201 1.201 25 H -0.169 1.169 26 C -0.050 4.050 27 C -0.143 4.143 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.144 0.856 38 H 0.114 0.886 39 H 0.130 0.870 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.677 -2.431 -30.983 32.267 hybrid contribution 0.890 0.026 0.460 1.002 sum -7.786 -2.404 -30.523 31.592 Atomic orbital electron populations 1.22186 0.94034 1.03452 1.02793 1.21782 0.95471 0.80539 1.04269 1.47855 1.65424 1.15382 1.05009 1.22203 0.95868 1.01309 0.87206 1.25883 0.90376 0.75795 0.86947 1.22314 1.03349 1.03910 0.95919 1.90431 1.59224 1.33265 1.54785 1.21051 0.75607 0.86088 0.86472 1.90660 1.47333 1.19946 1.88040 1.21649 1.05021 0.99489 0.89985 1.19357 1.01350 0.96127 0.87481 1.19700 0.93476 1.11052 1.02560 1.22787 0.98038 0.97779 0.92084 1.20228 0.90372 0.99665 1.01889 1.77202 0.97459 1.19337 1.22763 1.48663 1.07782 1.39373 1.17600 1.19664 0.93508 0.89482 0.85236 1.21251 1.37319 0.93082 1.07226 0.96152 1.25880 0.93404 1.04720 0.94028 1.70041 1.37082 1.38453 1.12021 0.85653 0.80661 0.77642 0.78724 1.17445 1.20124 1.16856 1.21408 0.97159 0.98000 0.88415 1.20451 0.88154 1.02805 1.02906 0.92838 0.91229 0.90034 0.89189 0.90285 0.82922 0.86582 0.87349 0.91119 0.85607 0.88620 0.87006 0.90888 0.92639 0.88587 0.91657 0.89196 0.93604 0.91602 0.91703 0.91170 0.90752 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 71.99 0.74 -0.55 16 2 C 0.10 1.14 5.93 86.38 0.51 1.65 16 3 N -0.61 -10.01 1.96 -826.14 -1.62 -11.63 16 4 C 0.06 0.65 5.82 85.64 0.50 1.15 16 5 C 0.33 5.07 7.33 29.10 0.21 5.28 16 6 C -0.20 -1.39 10.26 71.24 0.73 -0.66 16 7 O -0.50 -12.92 17.16 -1.46 -0.03 -12.94 16 8 C 0.52 12.29 7.67 87.65 0.67 12.96 16 9 O -0.58 -18.04 15.56 -3.03 -0.05 -18.09 16 10 C -0.12 -2.74 4.23 29.85 0.13 -2.61 16 11 C 0.00 -0.12 4.41 29.85 0.13 0.01 16 12 C -0.26 -9.14 5.35 -20.14 -0.11 -9.25 16 13 C 0.06 2.18 7.22 43.10 0.31 2.49 16 14 C -0.06 -1.66 10.26 71.24 0.73 -0.93 16 15 N -0.34 -15.99 12.58 -47.38 -0.60 -16.59 16 16 N -0.35 -16.74 3.60 -338.42 -1.22 -17.95 16 17 C 0.24 11.93 5.07 85.63 0.43 12.36 16 18 C -0.55 -32.75 9.94 25.60 0.25 -32.49 16 19 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 20 C 0.02 1.12 5.47 84.66 0.46 1.58 16 21 N -0.94 -58.53 13.96 21.45 0.30 -58.24 16 22 Si 0.95 42.04 27.47 68.60 1.88 43.92 16 23 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.25 -10.03 6.54 99.48 0.65 -9.38 16 26 C 0.08 3.20 6.93 41.40 0.29 3.49 16 27 C -0.09 -2.86 9.72 71.23 0.69 -2.17 16 28 H 0.05 0.54 7.22 -2.39 -0.02 0.52 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.08 1.01 6.44 -2.39 -0.02 1.00 16 33 H 0.15 0.34 8.07 -2.39 -0.02 0.32 16 34 H 0.12 1.43 7.42 -2.39 -0.02 1.41 16 35 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 37 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.10 2.09 7.40 -2.39 -0.02 2.07 16 39 H 0.11 2.07 7.19 -2.38 -0.02 2.05 16 40 H 0.07 2.08 7.20 -2.39 -0.02 2.06 16 41 H 0.05 1.76 7.73 -2.39 -0.02 1.74 16 42 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 44 H 0.09 2.01 7.25 -2.39 -0.02 2.00 16 45 H 0.05 2.26 7.20 -2.39 -0.02 2.25 16 46 H 0.07 2.90 6.48 -2.39 -0.02 2.89 16 47 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 48 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.07 2.40 7.08 -2.39 -0.02 2.39 16 50 H 0.10 2.76 7.77 -2.39 -0.02 2.74 16 Total: -1.00 -86.91 412.90 6.24 -80.68 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.87 Total: 18.52 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 6.69 Total: -7.68 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.13 Total: -104.40 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.07 Total: -31.03 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.92 kcal Total: -86.91 6.24 -80.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908395364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.909 kcal (2) G-P(sol) polarization free energy of solvation -86.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds