Wall clock time and date at job start Tue Mar 31 2020 19:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46953 * 2 1 4 4 C 1.35873 * 126.07702 * 125.00080 * 3 2 1 5 5 C 1.35584 * 107.58227 * 179.97438 * 4 3 2 6 6 O 1.36228 * 126.05461 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99979 * 180.02562 * 6 5 4 8 8 H 1.09005 * 110.43552 * 27.45786 * 7 6 5 9 9 C 1.54887 * 110.48540 * 264.76811 * 7 6 5 10 10 C 1.54883 * 102.75116 * 203.37839 * 9 7 6 11 11 C 1.54272 * 104.19416 * 37.94503 * 10 9 7 12 12 C 1.53875 * 106.59707 * 336.39040 * 11 10 9 13 13 H 1.08999 * 110.06896 * 240.69065 * 12 11 10 14 14 N 1.46499 * 110.03080 * 119.28665 * 12 11 10 15 15 C 1.34777 * 120.00199 * 87.83396 * 14 12 11 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 12 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.52994 * 109.47118 * 179.97438 * 18 17 15 20 20 C 1.50708 * 109.47076 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99591 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99904 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99869 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00085 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47180 * 90.00070 * 24 22 20 26 26 H 1.48503 * 109.46903 * 210.00050 * 24 22 20 27 27 H 1.48498 * 109.47152 * 329.99815 * 24 22 20 28 28 C 1.40118 * 107.89351 * 0.26653 * 5 4 3 29 29 N 1.30866 * 108.35784 * 359.54992 * 28 5 4 30 30 H 1.09002 * 109.46687 * 299.99683 * 1 2 3 31 31 H 1.09002 * 109.47179 * 60.00078 * 1 2 3 32 32 H 1.09000 * 109.46488 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47119 * 240.00624 * 2 1 3 34 34 H 1.08993 * 109.47227 * 120.00177 * 2 1 3 35 35 H 1.08002 * 126.21040 * 359.97438 * 4 3 2 36 36 H 1.09002 * 110.75723 * 321.69992 * 9 7 6 37 37 H 1.09007 * 110.75082 * 84.87807 * 9 7 6 38 38 H 1.09001 * 110.48974 * 156.61902 * 10 9 7 39 39 H 1.09000 * 110.48833 * 279.13602 * 10 9 7 40 40 H 1.08999 * 110.03236 * 217.10536 * 11 10 9 41 41 H 1.08996 * 110.03193 * 95.67540 * 11 10 9 42 42 H 0.97000 * 119.99484 * 267.82493 * 14 12 11 43 43 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 44 44 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 45 45 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 46 46 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 47 47 H 1.08998 * 109.46965 * 299.99512 * 19 18 17 48 48 H 1.09003 * 109.47184 * 60.00331 * 19 18 17 49 49 H 0.96996 * 120.00354 * 180.02562 * 23 22 20 50 50 H 1.07998 * 125.82319 * 179.74356 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8789 1.9257 0.8996 5 6 3.0753 3.2200 0.5469 6 8 3.8730 4.1151 1.1937 7 6 3.9379 5.4360 0.6524 8 1 3.0168 5.6750 0.1206 9 6 5.1617 5.5776 -0.2863 10 6 5.4260 7.1037 -0.2757 11 6 5.1442 7.5262 1.1811 12 6 4.1981 6.4658 1.7711 13 1 3.2604 6.9298 2.0769 14 7 4.8313 5.8111 2.9186 15 6 4.7010 6.3388 4.1519 16 8 4.0599 7.3559 4.3117 17 6 5.3576 5.6687 5.3313 18 6 5.0617 6.4681 6.6018 19 6 5.7277 5.7875 7.7993 20 6 5.4368 6.5753 9.0507 21 1 4.8365 7.4715 8.9972 22 6 5.9361 6.1513 10.2639 23 7 5.6818 6.8385 11.3560 24 14 6.9737 4.6008 10.3564 25 1 8.4048 4.9511 10.1712 26 1 6.7887 3.9598 11.6832 27 1 6.5524 3.6588 9.2886 28 6 2.3082 3.4756 -0.5974 29 7 1.6815 2.3753 -0.9277 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.3255 1.4193 1.7425 36 1 6.0188 5.0343 0.1117 37 1 4.9197 5.2316 -1.2913 38 1 6.4625 7.3133 -0.5399 39 1 4.7481 7.6130 -0.9606 40 1 4.6658 8.5054 1.2000 41 1 6.0744 7.5537 1.7484 42 1 5.3442 4.9978 2.7906 43 1 4.9658 4.6572 5.4390 44 1 6.4349 5.6260 5.1715 45 1 5.4534 7.4796 6.4942 46 1 3.9843 6.5109 6.7616 47 1 5.3355 4.7762 7.9068 48 1 6.8051 5.7445 7.6398 49 1 6.0333 6.5404 12.2095 50 1 2.2472 4.4189 -1.1198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926721622.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:24 Heat of formation + Delta-G solvation = -12.717814 kcal Electronic energy + Delta-G solvation = -28529.282447 eV Core-core repulsion = 24558.110322 eV Total energy + Delta-G solvation = -3971.172125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63843 -40.14955 -38.68867 -36.70757 -34.54763 -34.23808 -33.47051 -32.00781 -30.77037 -29.29320 -28.93667 -27.94784 -27.23113 -24.37236 -23.69118 -21.90383 -21.55309 -20.97451 -20.52192 -19.86591 -19.71759 -18.38018 -17.12384 -16.62012 -16.45046 -16.02857 -15.83677 -15.61405 -15.25267 -15.07973 -14.76820 -14.47526 -14.18741 -14.03994 -13.76675 -13.61780 -13.24984 -13.02060 -12.69093 -12.61128 -12.53832 -12.45110 -12.02270 -11.94539 -11.76706 -11.59591 -11.46901 -11.41030 -10.96819 -10.91387 -10.88041 -10.83479 -10.74040 -9.94585 -9.80395 -9.78093 -9.64903 -9.34316 -9.08203 -8.94933 -8.47563 -8.16226 -5.97277 -3.94659 1.47571 1.99427 2.45917 2.86350 2.96884 3.34101 3.40953 3.44370 3.45732 4.07107 4.16121 4.22891 4.40965 4.47080 4.50281 4.58474 4.64809 4.72737 4.85302 5.00253 5.06857 5.11064 5.15369 5.17587 5.26305 5.29576 5.34033 5.36146 5.42386 5.52123 5.61698 5.64184 5.66202 5.69160 5.76689 5.87306 5.96553 6.01131 6.20514 6.53827 6.59953 6.63009 6.75977 6.98280 7.17273 7.29273 7.43605 7.51326 7.70216 7.86974 8.51832 8.63434 9.09811 9.64955 11.16483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.002383 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.138642 B =11746.634633 C =13787.498913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.137 3.863 3 N -0.366 5.366 4 C 0.020 3.980 5 C -0.023 4.023 6 O -0.289 6.289 7 C 0.081 3.919 8 H 0.085 0.915 9 C -0.143 4.143 10 C -0.122 4.122 11 C -0.135 4.135 12 C 0.147 3.853 13 H 0.095 0.905 14 N -0.722 5.722 15 C 0.514 3.486 16 O -0.539 6.539 17 C -0.141 4.141 18 C -0.087 4.087 19 C -0.015 4.015 20 C -0.517 4.517 21 H 0.072 0.928 22 C 0.063 3.937 23 N -0.905 5.905 24 Si 0.881 3.119 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.266 1.266 28 C -0.008 4.008 29 N -0.270 5.270 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.181 0.819 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.404 0.596 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.015 0.985 48 H 0.010 0.990 49 H 0.262 0.738 50 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -12.463 -31.346 34.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 N -0.155 5.155 4 C -0.124 4.124 5 C -0.078 4.078 6 O -0.201 6.201 7 C 0.023 3.977 8 H 0.103 0.897 9 C -0.181 4.181 10 C -0.160 4.160 11 C -0.174 4.174 12 C 0.041 3.959 13 H 0.113 0.887 14 N -0.375 5.375 15 C 0.302 3.698 16 O -0.415 6.415 17 C -0.180 4.180 18 C -0.125 4.125 19 C -0.052 4.052 20 C -0.555 4.555 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.545 5.545 24 Si 0.709 3.291 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.190 1.190 28 C -0.194 4.194 29 N -0.094 5.094 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.198 0.802 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.239 0.761 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.033 0.967 48 H 0.029 0.971 49 H 0.072 0.928 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.619 -12.417 -31.635 34.446 hybrid contribution 1.304 -0.684 0.534 1.566 sum -4.315 -13.102 -31.101 34.022 Atomic orbital electron populations 1.22085 0.93702 1.03014 1.03713 1.21687 0.96050 0.76739 1.03932 1.48469 1.35977 1.10153 1.20937 1.21577 0.99155 0.93231 0.98390 1.18623 1.01173 0.91007 0.96952 1.85985 1.62871 1.19650 1.51567 1.23538 0.99001 0.80726 0.94416 0.89717 1.22992 0.98408 0.97148 0.99531 1.22266 1.02179 0.94784 0.96747 1.22612 1.00324 0.98777 0.95643 1.21601 0.97524 0.91607 0.85129 0.88685 1.45934 1.55291 1.29921 1.06344 1.21151 0.80061 0.84649 0.83954 1.90682 1.40959 1.24643 1.85175 1.21848 1.01163 1.01111 0.93927 1.21253 1.01434 0.98539 0.91248 1.19611 0.95276 0.96292 0.94032 1.21178 1.32828 1.11154 0.90360 0.90949 1.25058 0.96091 0.96863 0.95710 1.69923 1.46159 1.39596 0.98774 0.86757 0.80921 0.84162 0.77289 1.20373 1.21502 1.19022 1.23987 0.98992 0.98490 0.97906 1.77216 1.22405 0.96355 1.13416 0.91881 0.91125 0.90542 0.89733 0.88365 0.80204 0.90113 0.90941 0.90918 0.91181 0.90594 0.90449 0.76141 0.89423 0.89486 0.92159 0.92146 0.96690 0.97123 0.92840 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.10 37.16 0.38 -0.46 16 2 C 0.14 0.69 7.24 -4.04 -0.03 0.66 16 3 N -0.37 -3.14 3.71 -61.05 -0.23 -3.36 16 4 C 0.02 0.18 11.51 -16.71 -0.19 -0.02 16 5 C -0.02 -0.23 6.96 -39.83 -0.28 -0.50 16 6 O -0.29 -2.84 8.65 -20.47 -0.18 -3.01 16 7 C 0.08 0.67 3.03 -25.07 -0.08 0.59 16 8 H 0.08 0.61 6.29 -51.93 -0.33 0.28 16 9 C -0.14 -0.97 6.62 -24.74 -0.16 -1.13 16 10 C -0.12 -0.80 6.83 -25.07 -0.17 -0.97 16 11 C -0.13 -1.23 6.59 -25.61 -0.17 -1.40 16 12 C 0.15 1.54 3.20 -66.81 -0.21 1.33 16 13 H 0.10 1.17 7.56 -51.93 -0.39 0.78 16 14 N -0.72 -8.57 4.56 -52.72 -0.24 -8.81 16 15 C 0.51 8.15 7.83 -10.98 -0.09 8.06 16 16 O -0.54 -10.68 15.64 5.55 0.09 -10.59 16 17 C -0.14 -2.25 5.70 -27.88 -0.16 -2.41 16 18 C -0.09 -1.84 4.44 -26.74 -0.12 -1.96 16 19 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 20 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 21 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 22 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 23 N -0.91 -28.64 13.96 55.43 0.77 -27.87 16 24 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 28 C -0.01 -0.07 10.92 -17.26 -0.19 -0.26 16 29 N -0.27 -2.78 12.42 30.68 0.38 -2.40 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.28 8.07 -51.93 -0.42 -0.14 16 35 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 42 H 0.40 4.07 7.87 -40.82 -0.32 3.75 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 46 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 47 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 48 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.18 1.23 6.95 -52.49 -0.36 0.87 16 LS Contribution 406.84 15.07 6.13 6.13 Total: -1.00 -36.50 406.84 -8.46 -44.96 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.50 Total: 0.42 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.01 Total: -12.77 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.69 Total: -42.44 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.09 Total: -13.61 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.50 -8.46 -44.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926721622.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.242 kcal (2) G-P(sol) polarization free energy of solvation -36.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds