Wall clock time and date at job start Tue Mar 31 2020 19:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47058 * 2 1 4 4 C 1.34775 * 120.00369 * 84.72552 * 3 2 1 5 5 O 1.21285 * 119.99718 * 4.59376 * 4 3 2 6 6 C 1.50699 * 120.00608 * 184.59508 * 4 3 2 7 7 H 1.09004 * 109.15956 * 50.98803 * 6 4 3 8 8 C 1.53288 * 109.20275 * 291.66148 * 6 4 3 9 9 N 1.46789 * 108.49819 * 299.76576 * 8 6 4 10 10 C 1.49425 * 112.09820 * 193.76518 * 9 8 6 11 11 C 1.57029 * 99.32413 * 113.44614 * 10 9 8 12 12 C 1.56486 * 107.12840 * 41.34320 * 11 10 9 13 13 C 1.49525 * 107.64396 * 302.21657 * 9 8 6 14 14 C 1.54443 * 104.38729 * 288.60916 * 13 9 8 15 15 C 1.50172 * 114.91669 * 57.46876 * 13 9 8 16 16 O 1.42792 * 109.20845 * 170.31326 * 6 4 3 17 17 C 1.46506 * 120.00300 * 264.72747 * 3 2 1 18 18 C 1.53946 * 113.73916 * 38.73837 * 17 3 2 19 19 N 1.47818 * 86.03720 * 222.08865 * 18 17 3 20 20 C 1.36932 * 134.45703 * 204.64666 * 19 18 17 21 21 H 1.08003 * 119.99605 * 184.13222 * 20 19 18 22 22 C 1.38813 * 119.99940 * 4.13244 * 20 19 18 23 23 N 1.31615 * 119.99845 * 6.06587 * 22 20 19 24 24 Si 1.86800 * 119.99855 * 186.06430 * 22 20 19 25 25 H 1.48506 * 109.47078 * 94.97630 * 24 22 20 26 26 H 1.48502 * 109.47118 * 214.97930 * 24 22 20 27 27 H 1.48498 * 109.47408 * 334.98067 * 24 22 20 28 28 C 1.47586 * 91.04975 * 24.55276 * 19 18 17 29 29 H 1.08996 * 109.47080 * 297.27346 * 1 2 3 30 30 H 1.09002 * 109.47039 * 57.27119 * 1 2 3 31 31 H 1.09000 * 109.46830 * 177.27272 * 1 2 3 32 32 H 1.08997 * 109.46840 * 240.00275 * 2 1 3 33 33 H 1.09000 * 109.46823 * 119.99980 * 2 1 3 34 34 H 1.09001 * 109.63535 * 59.47248 * 8 6 4 35 35 H 1.09005 * 109.62974 * 180.02562 * 8 6 4 36 36 H 1.08991 * 111.42932 * 230.97652 * 10 9 8 37 37 H 1.09005 * 111.42660 * 355.92614 * 10 9 8 38 38 H 1.09000 * 118.35595 * 180.89010 * 11 10 9 39 39 H 1.09000 * 114.69765 * 55.82679 * 12 11 10 40 40 H 1.09003 * 114.69746 * 190.05791 * 12 11 10 41 41 H 1.09005 * 114.71114 * 179.97438 * 14 13 9 42 42 H 1.08994 * 114.79868 * 45.61838 * 14 13 9 43 43 H 1.09000 * 109.69468 * 187.26943 * 15 13 9 44 44 H 1.08995 * 109.69864 * 66.70361 * 15 13 9 45 45 H 1.08996 * 112.94875 * 170.33727 * 17 3 2 46 46 H 1.09004 * 113.77057 * 336.34743 * 18 17 3 47 47 H 1.08994 * 113.76742 * 107.75149 * 18 17 3 48 48 H 0.97005 * 119.99468 * 179.97438 * 23 22 20 49 49 H 1.08998 * 113.76829 * 221.15719 * 28 19 18 50 50 H 1.08995 * 113.77122 * 89.75744 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1418 2.0523 1.1622 5 8 1.9288 1.4876 2.2142 6 6 2.5446 3.5045 1.1547 7 1 1.9017 4.0505 0.4643 8 6 4.0001 3.6216 0.6882 9 7 4.8500 2.8724 1.6215 10 6 6.2984 3.1943 1.4450 11 6 6.5700 3.9061 2.8182 12 6 5.8209 3.0843 3.9193 13 6 4.6347 3.4415 2.9873 14 6 5.3212 4.8241 2.9396 15 6 3.2117 3.4156 3.4664 16 8 2.3873 4.0424 2.4681 17 6 2.3725 2.0330 -1.2634 18 6 1.4247 1.6871 -2.4262 19 7 2.6449 1.5797 -3.2535 20 6 2.9102 1.7010 -4.5914 21 1 3.9050 1.5069 -4.9644 22 6 1.9006 2.0736 -5.4682 23 7 0.7211 2.4256 -5.0022 24 14 2.2160 2.0751 -7.3094 25 1 1.7606 0.7867 -7.8907 26 1 1.4689 3.1937 -7.9386 27 1 3.6692 2.2461 -7.5626 28 6 3.4623 1.2918 -2.0589 29 1 -0.3633 0.4709 0.9134 30 1 -0.3633 0.5556 -0.8645 31 1 -0.3633 -1.0265 -0.0489 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0985 3.2031 -0.3134 35 1 4.2990 4.6699 0.6807 36 1 6.8975 2.2899 1.3399 37 1 6.4563 3.8730 0.6068 38 1 7.5708 4.2919 3.0124 39 1 6.0872 2.0281 3.9595 40 1 5.7823 3.5632 4.8977 41 1 5.2633 5.3939 3.8670 42 1 5.1006 5.4135 2.0497 43 1 3.1304 3.9620 4.4061 44 1 2.8918 2.3839 3.6124 45 1 2.5598 3.1010 -1.1527 46 1 0.8972 0.7421 -2.2968 47 1 0.7671 2.5067 -2.7155 48 1 0.0157 2.6863 -5.6150 49 1 4.4284 1.7964 -2.0556 50 1 3.5346 0.2305 -1.8214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950923655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:13 Heat of formation + Delta-G solvation = 75.408204 kcal Electronic energy + Delta-G solvation = -31748.647261 eV Core-core repulsion = 27781.296567 eV Total energy + Delta-G solvation = -3967.350694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.25607 -40.04542 -38.17527 -36.81485 -34.50431 -33.78509 -32.06665 -30.94492 -29.47875 -28.85286 -27.49481 -25.74287 -24.99863 -24.74022 -23.89833 -23.33737 -22.41042 -20.56473 -20.11144 -19.23552 -18.34847 -17.10970 -16.91293 -16.54542 -16.10859 -15.83596 -15.33305 -15.14349 -14.84702 -14.76699 -14.48827 -13.95924 -13.82715 -13.36561 -13.30063 -13.01305 -12.83972 -12.69658 -12.38316 -12.32084 -12.03069 -11.84303 -11.69917 -11.62279 -11.58419 -11.30342 -11.19284 -11.03074 -10.89479 -10.77195 -10.63001 -10.53797 -10.43965 -10.35848 -10.12608 -9.96392 -9.63034 -8.96656 -8.88145 -8.49693 -8.11796 -6.97393 -5.85221 -3.19655 2.87878 3.26547 3.34665 3.40475 3.41723 3.56630 3.67084 4.05462 4.17285 4.32914 4.37305 4.47022 4.63096 4.82251 4.95738 5.01971 5.10005 5.20908 5.30862 5.32153 5.39555 5.42648 5.47393 5.49950 5.50823 5.58475 5.62612 5.64697 5.69700 5.71602 5.73698 5.78705 5.82117 5.91351 5.95191 6.10863 6.18498 6.25050 6.38336 6.42602 6.43837 6.58903 6.73719 6.87450 7.02506 7.10442 7.19189 7.44500 7.83038 7.89130 8.50451 8.94693 9.61697 10.47478 11.30316 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.003671 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.752944 B = 7625.415002 C = 8653.435324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.589 5.589 4 C 0.510 3.490 5 O -0.541 6.541 6 C 0.076 3.924 7 H 0.130 0.870 8 C 0.002 3.998 9 N -0.465 5.465 10 C 0.034 3.966 11 C -0.142 4.142 12 C -0.109 4.109 13 C 0.019 3.981 14 C -0.177 4.177 15 C 0.073 3.927 16 O -0.357 6.357 17 C 0.077 3.923 18 C 0.147 3.853 19 N -0.606 5.606 20 C -0.225 4.225 21 H 0.081 0.919 22 C -0.004 4.004 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.112 3.888 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.037 0.963 47 H 0.084 0.916 48 H 0.255 0.745 49 H 0.045 0.955 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.910 2.710 16.510 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.322 5.322 4 C 0.297 3.703 5 O -0.420 6.420 6 C 0.015 3.985 7 H 0.147 0.853 8 C -0.127 4.127 9 N -0.189 5.189 10 C -0.093 4.093 11 C -0.161 4.161 12 C -0.147 4.147 13 C -0.072 4.072 14 C -0.215 4.215 15 C -0.003 4.003 16 O -0.274 6.274 17 C -0.027 4.027 18 C 0.021 3.979 19 N -0.333 5.333 20 C -0.352 4.352 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.563 5.563 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.015 4.015 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.055 0.945 47 H 0.102 0.898 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.425 2.019 16.641 18.334 hybrid contribution 0.496 0.718 -1.306 1.571 sum 7.921 2.737 15.335 17.475 Atomic orbital electron populations 1.22207 0.96033 1.01890 1.02560 1.21305 0.94266 0.82510 1.02611 1.48133 1.63773 1.13883 1.06420 1.21016 0.76530 0.88936 0.83768 1.90526 1.51432 1.69471 1.30552 1.22155 0.96707 0.92949 0.86738 0.85270 1.23351 0.92183 0.98434 0.98739 1.67231 1.03498 1.47518 1.00643 1.23850 0.89803 0.99940 0.95730 1.24848 0.97823 0.97958 0.95474 1.23641 0.94324 1.00779 0.95935 1.23846 0.95956 0.94534 0.92840 1.24527 0.97527 0.96768 1.02712 1.22140 0.85908 1.01807 0.90420 1.88130 1.64443 1.58811 1.15968 1.24186 0.99669 0.97151 0.81708 1.22874 0.91037 0.99920 0.84085 1.45709 1.03874 1.82087 1.01616 1.18977 0.95933 1.40031 0.80261 0.90147 1.24770 0.95938 1.01265 0.98138 1.69806 1.03272 1.49924 1.33332 0.86108 0.77441 0.77317 0.84928 1.21604 1.21637 1.20526 1.22959 0.94653 0.97230 0.86653 0.92714 0.91492 0.92150 0.90149 0.90740 0.87358 0.92103 0.89039 0.90936 0.87707 0.90387 0.88415 0.89082 0.91051 0.88826 0.88140 0.87484 0.94525 0.89756 0.93534 0.93669 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.93 37.16 0.37 -2.14 16 2 C 0.12 1.81 5.17 -4.04 -0.02 1.79 16 3 N -0.59 -9.60 2.70 -167.89 -0.45 -10.06 16 4 C 0.51 8.45 6.40 -10.99 -0.07 8.38 16 5 O -0.54 -10.09 13.37 -14.32 -0.19 -10.29 16 6 C 0.08 1.11 2.84 -27.73 -0.08 1.03 16 7 H 0.13 1.77 7.38 -51.93 -0.38 1.39 16 8 C 0.00 0.02 4.47 -3.74 -0.02 0.01 16 9 N -0.47 -6.05 5.56 -226.51 -1.26 -7.31 16 10 C 0.03 0.37 7.01 -0.23 0.00 0.36 16 11 C -0.14 -1.29 6.33 -97.99 -0.62 -1.91 16 12 C -0.11 -1.03 7.97 -26.45 -0.21 -1.24 16 13 C 0.02 0.22 1.62 -142.46 -0.23 -0.01 16 14 C -0.18 -1.77 7.02 -27.33 -0.19 -1.97 16 15 C 0.07 0.98 6.18 35.75 0.22 1.20 16 16 O -0.36 -5.36 10.51 -55.11 -0.58 -5.94 16 17 C 0.08 1.35 3.10 -70.13 -0.22 1.13 16 18 C 0.15 3.19 6.70 -2.83 -0.02 3.17 16 19 N -0.61 -14.50 3.70 -177.85 -0.66 -15.15 16 20 C -0.22 -5.98 10.69 -15.06 -0.16 -6.14 16 21 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 22 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -25.89 11.30 55.49 0.63 -25.27 16 24 Si 0.91 21.36 29.56 -169.99 -5.02 16.33 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 28 C 0.11 2.15 8.15 -2.96 -0.02 2.12 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.08 6.40 -51.93 -0.33 0.74 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.28 6.15 -51.93 -0.32 0.96 16 33 H 0.07 1.17 7.52 -51.93 -0.39 0.78 16 34 H 0.11 1.51 4.92 -51.93 -0.26 1.25 16 35 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.74 7.73 -51.93 -0.40 0.34 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.74 7.88 -51.93 -0.41 0.33 16 41 H 0.09 0.80 7.88 -51.93 -0.41 0.39 16 42 H 0.07 0.78 6.09 -51.93 -0.32 0.47 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.10 1.57 5.49 -51.93 -0.28 1.29 16 45 H 0.11 1.77 4.90 -51.93 -0.25 1.52 16 46 H 0.04 0.81 5.31 -51.93 -0.28 0.53 16 47 H 0.08 2.06 6.88 -51.93 -0.36 1.70 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.05 0.82 7.83 -51.93 -0.41 0.42 16 50 H 0.04 0.74 6.92 -51.93 -0.36 0.38 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -30.60 367.37 -10.92 -41.52 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.55 Total: 5.05 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.37 Total: 5.57 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -1.74 Total: -57.79 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.77 Total: -16.22 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.60 -10.92 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950923655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.927 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds