Wall clock time and date at job start Tue Mar 31 2020 19:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47058 * 2 1 4 4 C 1.34775 * 120.00369 * 84.72552 * 3 2 1 5 5 O 1.21285 * 119.99718 * 4.59376 * 4 3 2 6 6 C 1.50699 * 120.00608 * 184.59508 * 4 3 2 7 7 H 1.09004 * 109.15956 * 50.98803 * 6 4 3 8 8 C 1.53288 * 109.20275 * 291.66148 * 6 4 3 9 9 N 1.46789 * 108.49819 * 299.76576 * 8 6 4 10 10 C 1.49425 * 112.09820 * 193.76518 * 9 8 6 11 11 C 1.57029 * 99.32413 * 113.44614 * 10 9 8 12 12 C 1.56486 * 107.12840 * 41.34320 * 11 10 9 13 13 C 1.49525 * 107.64396 * 302.21657 * 9 8 6 14 14 C 1.54443 * 104.38729 * 288.60916 * 13 9 8 15 15 C 1.50172 * 114.91669 * 57.46876 * 13 9 8 16 16 O 1.42792 * 109.20845 * 170.31326 * 6 4 3 17 17 C 1.46506 * 120.00300 * 264.72747 * 3 2 1 18 18 C 1.53946 * 113.73916 * 38.73837 * 17 3 2 19 19 N 1.47818 * 86.03720 * 222.08865 * 18 17 3 20 20 C 1.36932 * 134.45703 * 204.64666 * 19 18 17 21 21 H 1.08003 * 119.99605 * 184.13222 * 20 19 18 22 22 C 1.38813 * 119.99940 * 4.13244 * 20 19 18 23 23 N 1.31615 * 119.99845 * 6.06587 * 22 20 19 24 24 Si 1.86800 * 119.99855 * 186.06430 * 22 20 19 25 25 H 1.48506 * 109.47078 * 94.97630 * 24 22 20 26 26 H 1.48502 * 109.47118 * 214.97930 * 24 22 20 27 27 H 1.48498 * 109.47408 * 334.98067 * 24 22 20 28 28 C 1.47586 * 91.04975 * 24.55276 * 19 18 17 29 29 H 1.08996 * 109.47080 * 297.27346 * 1 2 3 30 30 H 1.09002 * 109.47039 * 57.27119 * 1 2 3 31 31 H 1.09000 * 109.46830 * 177.27272 * 1 2 3 32 32 H 1.08997 * 109.46840 * 240.00275 * 2 1 3 33 33 H 1.09000 * 109.46823 * 119.99980 * 2 1 3 34 34 H 1.09001 * 109.63535 * 59.47248 * 8 6 4 35 35 H 1.09005 * 109.62974 * 180.02562 * 8 6 4 36 36 H 1.08991 * 111.42932 * 230.97652 * 10 9 8 37 37 H 1.09005 * 111.42660 * 355.92614 * 10 9 8 38 38 H 1.09000 * 118.35595 * 180.89010 * 11 10 9 39 39 H 1.09000 * 114.69765 * 55.82679 * 12 11 10 40 40 H 1.09003 * 114.69746 * 190.05791 * 12 11 10 41 41 H 1.09005 * 114.71114 * 179.97438 * 14 13 9 42 42 H 1.08994 * 114.79868 * 45.61838 * 14 13 9 43 43 H 1.09000 * 109.69468 * 187.26943 * 15 13 9 44 44 H 1.08995 * 109.69864 * 66.70361 * 15 13 9 45 45 H 1.08996 * 112.94875 * 170.33727 * 17 3 2 46 46 H 1.09004 * 113.77057 * 336.34743 * 18 17 3 47 47 H 1.08994 * 113.76742 * 107.75149 * 18 17 3 48 48 H 0.97005 * 119.99468 * 179.97438 * 23 22 20 49 49 H 1.08998 * 113.76829 * 221.15719 * 28 19 18 50 50 H 1.08995 * 113.77122 * 89.75744 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1418 2.0523 1.1622 5 8 1.9288 1.4876 2.2142 6 6 2.5446 3.5045 1.1547 7 1 1.9017 4.0505 0.4643 8 6 4.0001 3.6216 0.6882 9 7 4.8500 2.8724 1.6215 10 6 6.2984 3.1943 1.4450 11 6 6.5700 3.9061 2.8182 12 6 5.8209 3.0843 3.9193 13 6 4.6347 3.4415 2.9873 14 6 5.3212 4.8241 2.9396 15 6 3.2117 3.4156 3.4664 16 8 2.3873 4.0424 2.4681 17 6 2.3725 2.0330 -1.2634 18 6 1.4247 1.6871 -2.4262 19 7 2.6449 1.5797 -3.2535 20 6 2.9102 1.7010 -4.5914 21 1 3.9050 1.5069 -4.9644 22 6 1.9006 2.0736 -5.4682 23 7 0.7211 2.4256 -5.0022 24 14 2.2160 2.0751 -7.3094 25 1 1.7606 0.7867 -7.8907 26 1 1.4689 3.1937 -7.9386 27 1 3.6692 2.2461 -7.5626 28 6 3.4623 1.2918 -2.0589 29 1 -0.3633 0.4709 0.9134 30 1 -0.3633 0.5556 -0.8645 31 1 -0.3633 -1.0265 -0.0489 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0985 3.2031 -0.3134 35 1 4.2990 4.6699 0.6807 36 1 6.8975 2.2899 1.3399 37 1 6.4563 3.8730 0.6068 38 1 7.5708 4.2919 3.0124 39 1 6.0872 2.0281 3.9595 40 1 5.7823 3.5632 4.8977 41 1 5.2633 5.3939 3.8670 42 1 5.1006 5.4135 2.0497 43 1 3.1304 3.9620 4.4061 44 1 2.8918 2.3839 3.6124 45 1 2.5598 3.1010 -1.1527 46 1 0.8972 0.7421 -2.2968 47 1 0.7671 2.5067 -2.7155 48 1 0.0157 2.6863 -5.6150 49 1 4.4284 1.7964 -2.0556 50 1 3.5346 0.2305 -1.8214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950923655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:12 Heat of formation + Delta-G solvation = 55.464787 kcal Electronic energy + Delta-G solvation = -31749.512073 eV Core-core repulsion = 27781.296567 eV Total energy + Delta-G solvation = -3968.215506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.16132 -41.36607 -39.63123 -38.05768 -36.00676 -34.79381 -33.97099 -32.19549 -30.41419 -29.98173 -29.31051 -26.69987 -26.49556 -25.73732 -25.33894 -24.71549 -23.64567 -21.76612 -21.23587 -20.42828 -19.63317 -18.76971 -18.15463 -17.81063 -17.27730 -16.96321 -16.72193 -16.39210 -16.25931 -16.06241 -15.72874 -15.34194 -15.02727 -14.80263 -14.42191 -14.17768 -14.07471 -13.90851 -13.68586 -13.56864 -13.39681 -13.22900 -12.97484 -12.87479 -12.77082 -12.65994 -12.50659 -12.45638 -12.19283 -12.12156 -11.93968 -11.88349 -11.84683 -11.54208 -11.48824 -11.20512 -11.05898 -10.85268 -10.11080 -9.58323 -9.45538 -8.90866 -7.88810 -5.23847 1.48650 1.49511 1.56325 1.58360 1.93117 2.49377 2.61706 2.69485 3.23928 3.30291 3.31660 3.35974 3.52212 3.53381 3.56178 3.77612 3.88947 3.99170 4.05818 4.10786 4.20723 4.33080 4.36900 4.40639 4.43865 4.49943 4.54595 4.61038 4.73989 4.76216 4.80009 4.84461 4.86122 4.86813 4.90168 4.93565 4.98509 5.01180 5.11638 5.19090 5.22436 5.30516 5.38591 5.51764 5.56509 5.64991 5.82367 5.92204 5.93576 6.44982 6.91868 7.16373 7.61168 8.53736 9.26107 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.003671 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.752944 B = 7625.415002 C = 8653.435324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.588 5.588 4 C 0.510 3.490 5 O -0.561 6.561 6 C 0.075 3.925 7 H 0.135 0.865 8 C 0.010 3.990 9 N -0.489 5.489 10 C 0.029 3.971 11 C -0.128 4.128 12 C -0.102 4.102 13 C 0.002 3.998 14 C -0.170 4.170 15 C 0.072 3.928 16 O -0.368 6.368 17 C 0.110 3.890 18 C 0.146 3.854 19 N -0.632 5.632 20 C -0.232 4.232 21 H 0.084 0.916 22 C -0.059 4.059 23 N -0.946 5.946 24 Si 0.974 3.026 25 H -0.291 1.291 26 H -0.295 1.295 27 H -0.267 1.267 28 C 0.118 3.882 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.060 0.940 43 H 0.116 0.884 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.033 0.967 47 H 0.053 0.947 48 H 0.249 0.751 49 H 0.060 0.940 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.880 3.284 17.555 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.007 4.007 3 N -0.320 5.320 4 C 0.299 3.701 5 O -0.441 6.441 6 C 0.014 3.986 7 H 0.152 0.848 8 C -0.119 4.119 9 N -0.213 5.213 10 C -0.098 4.098 11 C -0.146 4.146 12 C -0.139 4.139 13 C -0.088 4.088 14 C -0.208 4.208 15 C -0.004 4.004 16 O -0.286 6.286 17 C 0.005 3.995 18 C 0.020 3.980 19 N -0.359 5.359 20 C -0.361 4.361 21 H 0.102 0.898 22 C -0.252 4.252 23 N -0.595 5.595 24 Si 0.802 3.198 25 H -0.219 1.219 26 H -0.222 1.222 27 H -0.191 1.191 28 C -0.008 4.008 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.134 0.866 44 H 0.091 0.909 45 H 0.138 0.862 46 H 0.051 0.949 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.426 2.581 17.715 20.232 hybrid contribution -0.124 0.472 -1.532 1.608 sum 9.303 3.052 16.183 18.915 Atomic orbital electron populations 1.22115 0.95414 1.02895 1.01364 1.21346 0.94729 0.82182 1.02476 1.48095 1.63830 1.14139 1.05982 1.21409 0.75807 0.89717 0.83196 1.90529 1.52248 1.70212 1.31117 1.22222 0.97929 0.91373 0.87100 0.84762 1.23209 0.91286 0.99065 0.98291 1.67202 1.04725 1.48098 1.01274 1.23933 0.88444 1.00366 0.97073 1.24802 0.98589 0.97051 0.94186 1.23735 0.92676 1.00732 0.96757 1.23964 0.95634 0.96360 0.92862 1.24515 0.97389 0.95808 1.03085 1.22201 0.86787 1.00454 0.90972 1.88105 1.65283 1.58907 1.16275 1.23695 0.97071 0.97653 0.81082 1.22768 0.90804 0.98669 0.85717 1.45989 1.05684 1.82325 1.01909 1.19330 0.96084 1.38836 0.81807 0.89788 1.25523 0.95952 1.01782 1.01980 1.69984 1.03949 1.51377 1.34169 0.85132 0.77780 0.76645 0.80203 1.21871 1.22167 1.19119 1.23039 0.95223 0.97808 0.84762 0.93386 0.93030 0.90085 0.90390 0.90588 0.88289 0.91052 0.88982 0.90562 0.85372 0.91212 0.86062 0.87376 0.92096 0.86615 0.90922 0.86229 0.94893 0.92831 0.94229 0.92184 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.73 9.93 71.98 0.71 -4.02 16 2 C 0.11 3.56 5.17 86.38 0.45 4.01 16 3 N -0.59 -19.02 2.70 -803.48 -2.17 -21.19 16 4 C 0.51 16.76 6.40 87.66 0.56 17.32 16 5 O -0.56 -20.94 13.37 15.96 0.21 -20.73 16 6 C 0.08 2.16 2.84 29.94 0.09 2.24 16 7 H 0.14 3.62 7.38 -2.38 -0.02 3.60 16 8 C 0.01 0.26 4.47 86.42 0.39 0.65 16 9 N -0.49 -12.01 5.56 -870.55 -4.84 -16.85 16 10 C 0.03 0.56 7.01 87.23 0.61 1.17 16 11 C -0.13 -1.91 6.33 -15.57 -0.10 -2.01 16 12 C -0.10 -1.63 7.97 30.78 0.25 -1.38 16 13 C 0.00 0.04 1.62 -4.97 -0.01 0.03 16 14 C -0.17 -2.91 7.02 30.21 0.21 -2.69 16 15 C 0.07 1.82 6.18 71.07 0.44 2.26 16 16 O -0.37 -10.77 10.51 -129.97 -1.37 -12.14 16 17 C 0.11 3.81 3.10 46.75 0.15 3.95 16 18 C 0.15 6.47 6.70 86.44 0.58 7.05 16 19 N -0.63 -30.28 3.70 -716.59 -2.65 -32.93 16 20 C -0.23 -12.37 10.69 84.03 0.90 -11.47 16 21 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 22 C -0.06 -3.19 5.49 84.86 0.47 -2.73 16 23 N -0.95 -54.58 11.30 21.65 0.24 -54.34 16 24 Si 0.97 44.09 29.56 68.60 2.03 46.12 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 C 0.12 4.40 8.15 86.49 0.71 5.11 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.68 6.40 -2.39 -0.02 1.67 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.46 6.15 -2.39 -0.01 2.44 16 33 H 0.08 2.36 7.52 -2.39 -0.02 2.34 16 34 H 0.10 2.64 4.92 -2.39 -0.01 2.62 16 35 H 0.07 1.64 5.97 -2.38 -0.01 1.62 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.39 7.73 -2.38 -0.02 1.37 16 38 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 40 H 0.12 1.37 7.88 -2.39 -0.02 1.35 16 41 H 0.11 1.49 7.88 -2.38 -0.02 1.47 16 42 H 0.06 1.19 6.09 -2.39 -0.01 1.17 16 43 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.07 2.26 5.49 -2.39 -0.01 2.25 16 45 H 0.12 3.90 4.90 -2.39 -0.01 3.89 16 46 H 0.03 1.48 5.31 -2.39 -0.01 1.47 16 47 H 0.05 2.71 6.88 -2.39 -0.02 2.69 16 48 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 49 H 0.06 2.09 7.83 -2.39 -0.02 2.07 16 50 H 0.05 1.68 6.92 -2.39 -0.02 1.66 16 Total: -1.00 -65.97 367.37 -1.20 -67.16 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.96 Total: 25.38 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 6.39 Total: 19.51 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -9.42 Total: -125.31 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.15 Total: -32.87 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.97 -1.20 -67.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950923655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.627 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds