Wall clock time and date at job start Tue Mar 31 2020 19:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47371 * 2 1 4 4 C 1.36448 * 124.85078 * 270.01824 * 3 2 1 5 5 C 1.50702 * 125.56899 * 359.94671 * 4 3 2 6 6 C 1.34485 * 108.85743 * 179.72685 * 4 3 2 7 7 C 1.46681 * 106.33337 * 0.38197 * 6 4 3 8 8 C 1.47258 * 126.94353 * 179.88816 * 7 6 4 9 9 O 1.21631 * 120.00122 * 179.68585 * 8 7 6 10 10 N 1.34775 * 120.00051 * 359.68076 * 8 7 6 11 11 C 1.46506 * 119.99914 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46887 * 180.02562 * 11 10 8 13 13 H 1.08999 * 110.88763 * 57.43038 * 12 11 10 14 14 C 1.54912 * 111.00533 * 293.55099 * 12 11 10 15 15 N 1.47427 * 104.83088 * 204.88089 * 14 12 11 16 16 C 1.36936 * 125.64518 * 204.09463 * 15 14 12 17 17 H 1.07999 * 120.00294 * 25.97388 * 16 15 14 18 18 C 1.38813 * 119.99647 * 205.98267 * 16 15 14 19 19 N 1.31617 * 119.99963 * 214.50307 * 18 16 15 20 20 Si 1.86800 * 120.00338 * 34.49854 * 18 16 15 21 21 H 1.48506 * 109.46939 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47389 * 240.00486 * 20 18 16 23 23 H 1.48500 * 109.47406 * 119.99895 * 20 18 16 24 24 C 1.47016 * 108.70356 * 24.35082 * 15 14 12 25 25 C 1.54333 * 107.26692 * 358.58987 * 24 15 14 26 26 H 1.09002 * 110.85082 * 219.66694 * 25 24 15 27 27 O 1.42901 * 110.66886 * 96.51975 * 25 24 15 28 28 C 1.34661 * 124.85292 * 89.99940 * 3 2 1 29 29 C 1.50695 * 125.79990 * 0.02562 * 28 3 2 30 30 H 1.08993 * 109.46896 * 300.00415 * 1 2 3 31 31 H 1.09004 * 109.46589 * 60.00256 * 1 2 3 32 32 H 1.08995 * 109.47414 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47319 * 239.99254 * 2 1 3 34 34 H 1.09010 * 109.47024 * 119.99684 * 2 1 3 35 35 H 1.09000 * 109.47202 * 89.99792 * 5 4 3 36 36 H 1.09002 * 109.46897 * 209.99476 * 5 4 3 37 37 H 1.09000 * 109.47390 * 329.99951 * 5 4 3 38 38 H 1.07999 * 126.83352 * 180.25297 * 6 4 3 39 39 H 0.96998 * 119.99662 * 0.02562 * 10 8 7 40 40 H 1.09001 * 109.47016 * 60.00491 * 11 10 8 41 41 H 1.08992 * 109.47277 * 300.00258 * 11 10 8 42 42 H 1.09000 * 110.36941 * 86.03926 * 14 12 11 43 43 H 1.09007 * 110.45669 * 323.76279 * 14 12 11 44 44 H 0.97001 * 120.00145 * 5.08052 * 19 18 16 45 45 H 1.09008 * 109.88212 * 118.13045 * 24 15 14 46 46 H 1.08996 * 109.88703 * 239.29728 * 24 15 14 47 47 H 0.96707 * 113.99813 * 66.41410 * 27 25 24 48 48 H 1.09006 * 109.46982 * 269.99849 * 29 28 3 49 49 H 1.08999 * 109.47473 * 29.99764 * 29 28 3 50 50 H 1.08999 * 109.46883 * 150.00401 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2780 2.1164 -1.1197 5 6 2.1102 1.6400 -2.5396 6 6 2.7033 3.3372 -0.7492 7 6 2.7117 3.3435 0.7176 8 6 3.1049 4.4584 1.5956 9 8 3.0579 4.3267 2.8038 10 7 3.5170 5.6247 1.0604 11 6 3.9076 6.7340 1.9340 12 6 4.3302 7.9312 1.0800 13 1 3.5266 8.2320 0.4078 14 6 5.6268 7.6206 0.2913 15 7 6.2374 8.9378 0.0352 16 6 7.1059 9.2305 -0.9822 17 1 7.0865 8.6500 -1.8927 18 6 8.0114 10.2734 -0.8432 19 7 8.3428 11.0010 -1.8887 20 14 8.7596 10.6443 0.8278 21 1 8.2275 9.6881 1.8317 22 1 8.4102 12.0304 1.2300 23 1 10.2364 10.5088 0.7501 24 6 5.7641 9.8834 1.0566 25 6 4.7839 9.1180 1.9704 26 1 3.9340 9.7453 2.2394 27 8 5.4514 8.6448 3.1420 28 6 2.2749 2.1067 1.1051 29 6 2.1090 1.6358 2.5269 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.1007 1.8670 -2.8822 36 1 2.8333 2.1451 -3.1801 37 1 2.2754 0.5635 -2.5836 38 1 2.9849 4.1504 -1.4018 39 1 3.5542 5.7297 0.0969 40 1 4.7415 6.4242 2.5639 41 1 3.0630 7.0164 2.5623 42 1 5.3890 7.1233 -0.6490 43 1 6.2967 7.0016 0.8882 44 1 7.9003 10.8570 -2.7398 45 1 6.6079 10.2513 1.6405 46 1 5.2491 10.7173 0.5796 47 1 5.7552 9.3478 3.7325 48 1 1.0999 1.8646 2.8700 49 1 2.2737 0.5594 2.5748 50 1 2.8331 2.1430 3.1644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958231869.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:10 Heat of formation + Delta-G solvation = -20.158542 kcal Electronic energy + Delta-G solvation = -29322.098781 eV Core-core repulsion = 25350.604002 eV Total energy + Delta-G solvation = -3971.494779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66687 -39.25049 -38.27862 -35.00919 -34.54931 -34.38900 -32.83449 -32.26820 -30.43235 -29.53995 -29.16899 -27.88731 -25.93756 -24.75491 -23.97984 -22.95611 -21.67377 -20.68424 -19.88390 -19.77834 -18.71084 -17.79289 -17.10284 -16.76805 -16.04020 -15.61163 -15.40872 -15.14111 -14.81944 -14.72153 -14.34263 -13.80603 -13.75268 -13.59533 -13.46792 -13.36860 -13.32019 -13.16853 -12.93829 -12.74049 -12.60322 -12.57631 -12.30421 -12.17694 -11.93842 -11.77640 -11.69875 -11.51050 -11.18057 -10.92132 -10.61242 -10.58225 -10.23521 -9.86418 -9.60058 -9.34148 -9.23331 -8.85868 -8.61214 -8.32970 -8.07768 -6.96243 -6.37231 -3.23664 1.74004 2.25869 2.53688 3.47694 3.56252 3.59420 3.72231 3.73664 4.21353 4.41606 4.51636 4.52452 4.64104 4.65090 4.69114 4.91869 4.96134 5.05380 5.08896 5.11276 5.16205 5.22974 5.26706 5.32058 5.33122 5.45629 5.46982 5.50984 5.54989 5.62720 5.75135 5.77852 5.85224 5.89659 5.96071 6.16184 6.26720 6.33036 6.53530 6.60354 6.66300 6.70706 6.77355 6.92058 6.97263 7.10162 7.84665 7.90047 8.01521 8.38977 8.57143 9.00215 9.60374 10.34608 11.05424 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002518 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.614012 B =11118.971563 C =12172.111930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.438 5.438 4 C 0.009 3.991 5 C -0.083 4.083 6 C -0.164 4.164 7 C -0.231 4.231 8 C 0.590 3.410 9 O -0.557 6.557 10 N -0.723 5.723 11 C 0.143 3.857 12 C -0.108 4.108 13 H 0.090 0.910 14 C 0.138 3.862 15 N -0.599 5.599 16 C -0.340 4.340 17 H 0.069 0.931 18 C 0.000 4.000 19 N -0.901 5.901 20 Si 1.031 2.969 21 H -0.273 1.273 22 H -0.294 1.294 23 H -0.297 1.297 24 C 0.096 3.904 25 C 0.099 3.901 26 H 0.064 0.936 27 O -0.557 6.557 28 C 0.103 3.897 29 C -0.092 4.092 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.145 0.855 39 H 0.400 0.600 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.028 0.972 44 H 0.267 0.733 45 H 0.037 0.963 46 H 0.040 0.960 47 H 0.375 0.625 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 -20.897 3.925 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.116 5.116 4 C -0.099 4.099 5 C -0.140 4.140 6 C -0.188 4.188 7 C -0.241 4.241 8 C 0.379 3.621 9 O -0.437 6.437 10 N -0.373 5.373 11 C 0.020 3.980 12 C -0.128 4.128 13 H 0.108 0.892 14 C 0.012 3.988 15 N -0.327 5.327 16 C -0.467 4.467 17 H 0.087 0.913 18 C -0.203 4.203 19 N -0.539 5.539 20 Si 0.861 3.139 21 H -0.200 1.200 22 H -0.222 1.222 23 H -0.225 1.225 24 C -0.030 4.030 25 C 0.039 3.961 26 H 0.082 0.918 27 O -0.363 6.363 28 C -0.013 4.013 29 C -0.149 4.149 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.163 0.837 39 H 0.234 0.766 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.222 0.778 48 H 0.093 0.907 49 H 0.078 0.922 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.840 -20.909 5.147 27.336 hybrid contribution -0.813 -0.243 -1.158 1.436 sum -17.654 -21.152 3.989 27.838 Atomic orbital electron populations 1.22149 0.94188 1.02974 1.03369 1.21858 0.95684 0.80834 1.04427 1.43614 1.51072 1.11794 1.05111 1.20161 1.08513 0.92594 0.88599 1.20319 1.02852 1.01057 0.89766 1.21816 1.06942 0.96819 0.93191 1.20120 1.15778 0.94989 0.93165 1.17306 0.76274 0.81558 0.86963 1.90711 1.55812 1.82513 1.14699 1.45832 1.67591 1.13312 1.10563 1.21089 1.00094 0.84703 0.92156 1.22667 0.99270 0.94092 0.96761 0.89163 1.21672 0.91062 0.89937 0.96125 1.44637 1.52576 1.03331 1.32129 1.19813 1.14763 1.19102 0.93040 0.91305 1.26058 0.95736 0.94265 1.04274 1.70867 1.45651 1.34548 1.02786 0.84371 0.76575 0.75509 0.77453 1.19956 1.22183 1.22530 1.22348 0.95579 0.93594 0.91445 1.22725 0.93621 0.94444 0.85290 0.91827 1.86474 1.78384 1.37287 1.34112 1.20233 1.00946 0.91063 0.89050 1.20547 1.04169 1.00449 0.89707 0.91726 0.91776 0.90697 0.89111 0.89110 0.91174 0.89967 0.91986 0.83745 0.76628 0.90287 0.91966 0.94174 0.95433 0.92301 0.94568 0.94183 0.77797 0.90723 0.92210 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.24 37.16 0.38 -0.44 16 2 C 0.09 0.54 6.30 -4.05 -0.03 0.52 16 3 N -0.44 -4.21 2.69 -107.96 -0.29 -4.50 16 4 C 0.01 0.09 6.85 -81.86 -0.56 -0.47 16 5 C -0.08 -0.55 10.06 36.01 0.36 -0.19 16 6 C -0.16 -1.95 10.45 -37.50 -0.39 -2.34 16 7 C -0.23 -3.21 6.29 -103.35 -0.65 -3.86 16 8 C 0.59 9.49 7.81 -12.60 -0.10 9.39 16 9 O -0.56 -10.34 14.81 5.25 0.08 -10.26 16 10 N -0.72 -10.82 5.40 -61.43 -0.33 -11.15 16 11 C 0.14 2.30 4.74 -4.04 -0.02 2.28 16 12 C -0.11 -1.82 3.03 -88.47 -0.27 -2.09 16 13 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 14 C 0.14 2.86 6.40 -2.53 -0.02 2.85 16 15 N -0.60 -14.85 3.06 -170.06 -0.52 -15.37 16 16 C -0.34 -9.78 10.24 -15.06 -0.15 -9.93 16 17 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 18 C 0.00 0.01 5.29 -17.43 -0.09 -0.08 16 19 N -0.90 -27.90 13.70 55.49 0.76 -27.14 16 20 Si 1.03 26.25 26.22 -169.99 -4.46 21.79 16 21 H -0.27 -6.67 6.17 56.52 0.35 -6.32 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 24 C 0.10 2.07 5.80 -3.06 -0.02 2.05 16 25 C 0.10 1.70 4.09 -24.89 -0.10 1.60 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 O -0.56 -9.35 12.09 -35.23 -0.43 -9.77 16 28 C 0.10 1.24 6.89 -81.88 -0.56 0.67 16 29 C -0.09 -0.93 9.52 36.00 0.34 -0.59 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.39 6.90 -51.93 -0.36 0.04 16 34 H 0.09 0.44 6.88 -51.92 -0.36 0.08 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.33 6.94 -51.93 -0.36 -0.03 16 38 H 0.14 1.52 7.70 -52.49 -0.40 1.12 16 39 H 0.40 5.35 7.46 -40.82 -0.30 5.04 16 40 H 0.08 1.46 7.43 -51.93 -0.39 1.07 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.62 8.01 -51.93 -0.42 0.21 16 44 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 45 H 0.04 0.82 3.76 -51.92 -0.20 0.63 16 46 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.38 4.76 9.12 45.56 0.42 5.17 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.45 6.92 -51.93 -0.36 0.09 16 50 H 0.10 1.27 6.47 -51.93 -0.34 0.94 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -36.34 396.27 -8.43 -44.77 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.34 Total: 6.30 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.88 Total: -0.64 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.38 Total: -58.16 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.35 Total: -20.03 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -4.46 Total: 21.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.34 -8.43 -44.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958231869.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.609 kcal (2) G-P(sol) polarization free energy of solvation -36.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds