Wall clock time and date at job start Tue Mar 31 2020 19:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47462 * 2 1 4 4 C 1.46759 * 124.34885 * 89.99227 * 3 2 1 5 5 C 1.54490 * 105.47338 * 162.96590 * 4 3 2 6 6 H 1.09002 * 110.96598 * 267.26397 * 5 4 3 7 7 C 1.50691 * 110.97059 * 143.53739 * 5 4 3 8 8 O 1.21286 * 120.00218 * 3.08918 * 7 5 4 9 9 N 1.34772 * 120.00311 * 183.09272 * 7 5 4 10 10 C 1.46499 * 120.00423 * 179.97438 * 9 7 5 11 11 C 1.53955 * 113.58074 * 204.99682 * 10 9 7 12 12 C 1.52915 * 86.78355 * 220.58562 * 11 10 9 13 13 C 1.52906 * 121.13671 * 150.62887 * 12 11 10 14 14 C 1.53952 * 86.88366 * 100.85893 * 13 12 11 15 15 N 1.46494 * 113.58043 * 270.00316 * 14 13 12 16 16 C 1.36935 * 119.99810 * 204.99834 * 15 14 13 17 17 H 1.07995 * 120.00616 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99955 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99758 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00190 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46984 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46935 * 120.00046 * 20 18 16 23 23 H 1.48498 * 109.47231 * 240.00183 * 20 18 16 24 24 C 1.53102 * 121.14657 * 259.09824 * 12 11 10 25 25 C 1.52906 * 88.03899 * 24.90235 * 12 11 10 26 26 C 1.54632 * 101.79698 * 25.39985 * 5 4 3 27 27 C 1.34421 * 124.34681 * 269.97794 * 3 2 1 28 28 O 1.21270 * 124.94534 * 0.43147 * 27 3 2 29 29 H 1.08997 * 109.47375 * 300.00562 * 1 2 3 30 30 H 1.09007 * 109.46865 * 60.00179 * 1 2 3 31 31 H 1.08993 * 109.47421 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47375 * 239.99438 * 2 1 3 33 33 H 1.09007 * 109.46865 * 119.99821 * 2 1 3 34 34 H 1.09004 * 110.24813 * 43.97189 * 4 3 2 35 35 H 1.09001 * 110.32571 * 282.00261 * 4 3 2 36 36 H 0.97003 * 119.99815 * 0.02562 * 9 7 5 37 37 H 1.08994 * 112.82569 * 336.09221 * 10 9 7 38 38 H 1.09000 * 113.65666 * 106.11580 * 11 10 9 39 39 H 1.08999 * 113.66562 * 335.05964 * 11 10 9 40 40 H 1.09002 * 113.66421 * 346.34112 * 13 12 11 41 41 H 1.08998 * 113.66230 * 215.37880 * 13 12 11 42 42 H 1.09007 * 113.57685 * 139.28894 * 14 13 12 43 43 H 0.97004 * 120.00085 * 25.00857 * 15 14 13 44 44 H 0.97003 * 120.00296 * 179.97438 * 19 18 16 45 45 H 1.08998 * 113.57982 * 144.67482 * 24 12 11 46 46 H 1.08999 * 113.80409 * 13.65542 * 24 12 11 47 47 H 1.09003 * 113.66269 * 89.57083 * 25 12 11 48 48 H 1.09000 * 113.66385 * 220.62446 * 25 12 11 49 49 H 1.08998 * 110.48498 * 93.89178 * 26 5 4 50 50 H 1.08996 * 110.48792 * 216.54617 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1749 3.3439 0.7488 6 1 4.2336 3.1029 0.8458 7 6 2.8382 4.5987 1.5122 8 8 2.0112 4.5657 2.3987 9 7 3.4559 5.7577 1.2098 10 6 3.1281 6.9778 1.9516 11 6 3.4039 8.2709 1.1629 12 6 3.9381 8.8532 2.4720 13 6 5.0291 9.9246 2.4738 14 6 3.9055 10.9489 2.7157 15 7 3.3308 11.4906 1.4818 16 6 2.7286 12.7204 1.4894 17 1 2.6776 13.2912 2.4047 18 6 2.1835 13.2335 0.3203 19 7 2.2452 12.5377 -0.7952 20 14 1.3626 14.9114 0.3304 21 1 1.4251 15.4848 1.6988 22 1 2.0672 15.8129 -0.6163 23 1 -0.0566 14.7706 -0.0835 24 6 3.0860 9.7969 3.3250 25 6 4.2331 7.4234 2.9266 26 6 2.7713 3.4755 -0.7381 27 6 2.2716 2.0961 -1.1098 28 8 2.1220 1.6942 -2.2442 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8320 1.5530 1.9385 35 1 1.3644 2.5312 1.6441 36 1 4.1170 5.7843 0.5005 37 1 2.1362 6.9450 2.4022 38 1 2.5014 8.7635 0.8011 39 1 4.1654 8.1587 0.3911 40 1 5.5286 10.0420 1.5121 41 1 5.7273 9.8365 3.3062 42 1 4.1696 11.7241 3.4350 43 1 3.3768 10.9781 0.6595 44 1 1.8640 12.8960 -1.6121 45 1 3.2372 9.6717 4.3971 46 1 2.0328 9.8131 3.0445 47 1 5.2276 7.0730 2.6505 48 1 3.9930 7.2389 3.9737 49 1 1.9768 4.2128 -0.8538 50 1 3.6351 3.7455 -1.3455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963926468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:00 Heat of formation + Delta-G solvation = -17.247496 kcal Electronic energy + Delta-G solvation = -28819.020151 eV Core-core repulsion = 24847.651604 eV Total energy + Delta-G solvation = -3971.368547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.20797 -40.34030 -39.11398 -36.66926 -35.83062 -34.37400 -33.51433 -32.18783 -30.10662 -29.44395 -28.09757 -25.64879 -25.20707 -24.92403 -23.90543 -23.34559 -22.18924 -20.51040 -19.97969 -19.64847 -17.98236 -17.40673 -17.26901 -17.10265 -16.38463 -16.15112 -15.62044 -15.17610 -14.87668 -14.74398 -14.46999 -14.17737 -13.98753 -13.96389 -13.80522 -13.43739 -13.36954 -12.81333 -12.67611 -12.49739 -12.46186 -12.34210 -12.08629 -11.89846 -11.77393 -11.67429 -11.45394 -11.38770 -10.99467 -10.87376 -10.73705 -10.35875 -10.14778 -10.04918 -9.94206 -9.68379 -9.63432 -9.33863 -9.11690 -9.03492 -8.87379 -6.98991 -5.81151 -3.09364 2.23061 2.34030 2.52719 2.99187 3.41307 3.47413 3.49391 3.82225 3.93378 4.34698 4.45731 4.54965 4.62548 4.68214 4.74639 4.77860 4.80809 4.90627 4.97453 5.00068 5.06825 5.16259 5.28667 5.32654 5.35699 5.44475 5.47767 5.50643 5.61432 5.76804 5.80230 5.84031 5.91219 5.93672 6.10516 6.14745 6.22077 6.23477 6.31822 6.42849 6.48854 6.60551 6.71175 6.76972 6.96011 7.04922 7.33660 7.69715 7.80752 7.99413 8.38629 9.49587 10.07932 10.42512 11.41418 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016709 B = 0.002128 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.375612 B =13152.237968 C =14083.578848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.620 5.620 4 C 0.117 3.883 5 C -0.125 4.125 6 H 0.118 0.882 7 C 0.525 3.475 8 O -0.536 6.536 9 N -0.711 5.711 10 C 0.122 3.878 11 C -0.117 4.117 12 C -0.090 4.090 13 C -0.143 4.143 14 C 0.168 3.832 15 N -0.704 5.704 16 C -0.240 4.240 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.151 4.151 25 C -0.137 4.137 26 C -0.146 4.146 27 C 0.520 3.480 28 O -0.529 6.529 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.401 0.599 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.112 0.888 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -24.083 5.284 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.355 5.355 4 C -0.006 4.006 5 C -0.147 4.147 6 H 0.136 0.864 7 C 0.310 3.690 8 O -0.413 6.413 9 N -0.361 5.361 10 C 0.018 3.982 11 C -0.155 4.155 12 C -0.091 4.091 13 C -0.182 4.182 14 C 0.056 3.944 15 N -0.343 5.343 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.192 4.192 25 C -0.176 4.176 26 C -0.187 4.187 27 C 0.308 3.692 28 O -0.405 6.405 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.236 0.764 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.130 0.870 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.841 -24.199 5.339 25.077 hybrid contribution -0.117 0.704 -0.593 0.928 sum 3.724 -23.495 4.746 24.257 Atomic orbital electron populations 1.22173 0.95608 1.02446 1.02767 1.21361 0.94597 0.80756 1.03173 1.48372 1.65919 1.13998 1.07204 1.21978 1.00619 0.91085 0.86895 1.22265 1.02710 0.94373 0.95376 0.86356 1.20048 0.81035 0.84507 0.83442 1.90727 1.33316 1.85538 1.31679 1.46047 1.42991 1.08572 1.38461 1.22692 0.99862 0.81850 0.93846 1.23034 1.02316 0.93863 0.96285 1.22091 0.98818 0.91693 0.96513 1.23278 0.96672 0.96898 1.01377 1.21092 0.91366 0.91896 0.90038 1.42165 1.66956 1.19353 1.05828 1.19343 1.28878 0.93925 0.95010 0.90980 1.24750 1.01746 0.98770 0.95667 1.69663 1.50851 1.38033 0.99513 0.86115 0.78927 0.83867 0.77268 1.20520 1.21887 1.21867 1.23613 0.99908 0.98231 0.97472 1.23301 0.98469 0.96491 0.99330 1.22384 1.04540 0.96881 0.94847 1.20766 0.76825 0.87201 0.84424 1.90740 1.53684 1.75049 1.21049 0.92168 0.92154 0.91325 0.89933 0.90202 0.89713 0.88962 0.76408 0.86866 0.89627 0.89775 0.91586 0.90604 0.92136 0.77994 0.93526 0.91179 0.91293 0.90195 0.91415 0.87030 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 37.16 0.38 -0.79 16 2 C 0.12 0.84 6.65 -4.04 -0.03 0.82 16 3 N -0.62 -5.21 2.93 -172.38 -0.51 -5.72 16 4 C 0.12 0.85 6.69 -3.12 -0.02 0.83 16 5 C -0.13 -0.86 3.54 -90.14 -0.32 -1.18 16 6 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 7 C 0.52 5.25 7.06 -10.99 -0.08 5.18 16 8 O -0.54 -7.45 15.13 5.55 0.08 -7.36 16 9 N -0.71 -6.69 5.34 -52.85 -0.28 -6.98 16 10 C 0.12 1.48 4.24 -66.94 -0.28 1.20 16 11 C -0.12 -1.64 6.95 -26.28 -0.18 -1.82 16 12 C -0.09 -1.30 1.03 -154.61 -0.16 -1.46 16 13 C -0.14 -2.21 7.58 -26.28 -0.20 -2.41 16 14 C 0.17 3.22 4.55 -66.95 -0.30 2.91 16 15 N -0.70 -16.94 5.31 -52.47 -0.28 -17.22 16 16 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 20 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C -0.15 -2.51 7.65 -26.18 -0.20 -2.71 16 25 C -0.14 -1.63 7.64 -26.28 -0.20 -1.83 16 26 C -0.15 -1.11 6.41 -26.71 -0.17 -1.29 16 27 C 0.52 5.47 8.02 -10.83 -0.09 5.38 16 28 O -0.53 -7.63 17.59 5.57 0.10 -7.53 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.83 7.00 -51.93 -0.36 0.46 16 36 H 0.40 2.76 8.73 -40.82 -0.36 2.41 16 37 H 0.11 1.63 7.47 -51.93 -0.39 1.24 16 38 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 39 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.17 8.10 -51.92 -0.42 0.75 16 43 H 0.39 9.73 7.24 -40.82 -0.30 9.43 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.11 0.93 7.89 -51.93 -0.41 0.52 16 50 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -33.66 406.54 -9.69 -43.34 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.53 Total: 9.32 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.10 Total: -4.30 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.34 Total: -56.67 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.18 Total: -14.89 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.66 -9.69 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963926468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.097 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds