Wall clock time and date at job start Tue Mar 31 2020 19:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47232 * 2 1 4 4 C 1.46769 * 124.34627 * 270.02539 * 3 2 1 5 5 C 1.54485 * 105.47063 * 197.01801 * 4 3 2 6 6 H 1.08998 * 110.96790 * 92.70361 * 5 4 3 7 7 C 1.50707 * 110.99743 * 216.44789 * 5 4 3 8 8 O 1.21279 * 120.00177 * 353.85398 * 7 5 4 9 9 N 1.34770 * 119.99500 * 173.84697 * 7 5 4 10 10 C 1.47179 * 136.00171 * 359.64320 * 9 7 5 11 11 C 1.53173 * 87.74247 * 153.41599 * 10 9 7 12 12 C 1.47177 * 135.99568 * 179.97438 * 9 7 5 13 13 C 1.52519 * 114.45027 * 272.10808 * 11 10 9 14 14 C 1.53212 * 109.35162 * 169.97794 * 13 11 10 15 15 C 1.53149 * 109.34322 * 58.89319 * 14 13 11 16 16 N 1.46891 * 109.12440 * 303.48429 * 15 14 13 17 17 C 1.36934 * 120.70163 * 235.37726 * 16 15 14 18 18 H 1.08002 * 120.00036 * 26.80087 * 17 16 15 19 19 C 1.38809 * 120.00167 * 206.79445 * 17 16 15 20 20 N 1.31621 * 119.99916 * 17.06665 * 19 17 16 21 21 Si 1.86805 * 120.00304 * 197.06967 * 19 17 16 22 22 H 1.48497 * 109.46716 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46918 * 119.99634 * 21 19 17 24 24 H 1.48498 * 109.47149 * 239.99950 * 21 19 17 25 25 C 1.47150 * 118.59590 * 55.40372 * 16 15 14 26 26 C 1.54624 * 101.76550 * 334.58336 * 5 4 3 27 27 C 1.34415 * 124.35207 * 90.02501 * 3 2 1 28 28 O 1.21274 * 124.94139 * 359.86078 * 27 3 2 29 29 H 1.09001 * 109.47597 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46833 * 300.00268 * 1 2 3 31 31 H 1.09004 * 109.47065 * 59.99702 * 1 2 3 32 32 H 1.08996 * 109.46612 * 239.99693 * 2 1 3 33 33 H 1.08994 * 109.46780 * 119.99843 * 2 1 3 34 34 H 1.08993 * 110.24646 * 78.01553 * 4 3 2 35 35 H 1.09006 * 110.32130 * 316.05228 * 4 3 2 36 36 H 1.09004 * 113.49032 * 268.10890 * 10 9 7 37 37 H 1.09004 * 113.49231 * 38.61621 * 10 9 7 38 38 H 1.09000 * 113.48703 * 321.37663 * 12 9 7 39 39 H 1.08996 * 113.48572 * 91.88552 * 12 9 7 40 40 H 1.09000 * 109.48635 * 289.94109 * 13 11 10 41 41 H 1.09000 * 109.49201 * 49.99038 * 13 11 10 42 42 H 1.08998 * 109.49146 * 178.85059 * 14 13 11 43 43 H 1.08997 * 109.49467 * 298.93645 * 14 13 11 44 44 H 1.09004 * 109.52686 * 63.37919 * 15 14 13 45 45 H 1.08998 * 109.52750 * 183.51734 * 15 14 13 46 46 H 0.96997 * 120.00202 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.63508 * 189.07934 * 25 16 15 48 48 H 1.08995 * 109.64141 * 68.46013 * 25 16 15 49 49 H 1.09001 * 110.48272 * 266.12004 * 26 5 4 50 50 H 1.08994 * 110.48736 * 143.47625 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2939 2.1620 -1.2118 5 6 3.1743 3.3441 -0.7490 6 1 4.2329 3.1033 -0.8456 7 6 2.8378 4.5993 -1.5122 8 8 2.0522 4.5556 -2.4352 9 7 3.4098 5.7703 -1.1690 10 6 4.3684 6.2211 -0.1472 11 6 4.7601 7.3536 -1.1012 12 6 3.3454 7.1605 -1.6479 13 6 5.8654 6.9934 -2.0885 14 6 5.9912 8.1036 -3.1369 15 6 6.3081 9.4285 -2.4371 16 7 5.2642 9.7091 -1.4425 17 6 4.5674 10.8875 -1.4736 18 1 4.4424 11.4165 -2.4069 19 6 4.0216 11.4021 -0.3057 20 7 4.4387 10.9654 0.8638 21 14 2.6952 12.7145 -0.3937 22 1 2.4049 13.0303 -1.8154 23 1 1.4608 12.2155 0.2640 24 1 3.1649 13.9404 0.3003 25 6 4.9835 8.6973 -0.4116 26 6 2.7699 3.4752 0.7377 27 6 2.2717 2.0961 1.1097 28 8 2.1269 1.6925 2.2441 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3631 2.5309 -1.6426 35 1 2.8311 1.5541 -1.9399 36 1 3.8938 6.5702 0.7699 37 1 5.1728 5.5091 0.0381 38 1 3.2838 7.2438 -2.7330 39 1 2.5953 7.7624 -1.1348 40 1 6.8099 6.8885 -1.5547 41 1 5.6201 6.0530 -2.5819 42 1 6.7943 7.8583 -3.8318 43 1 5.0526 8.1962 -3.6831 44 1 7.2753 9.3557 -1.9397 45 1 6.3366 10.2317 -3.1734 46 1 4.0576 11.3253 1.6800 47 1 4.0880 8.9779 0.1428 48 1 5.8314 8.6231 0.2694 49 1 1.9750 4.2121 0.8532 50 1 3.6333 3.7457 1.3454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981801695.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:19 Heat of formation + Delta-G solvation = -8.212991 kcal Electronic energy + Delta-G solvation = -30169.907513 eV Core-core repulsion = 26198.930732 eV Total energy + Delta-G solvation = -3970.976782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15150 -40.28771 -38.37341 -36.48045 -35.89278 -34.19268 -32.91799 -30.80747 -30.08908 -29.65875 -27.96516 -26.31678 -25.79548 -25.42739 -23.86835 -22.71860 -22.32561 -20.74409 -19.65189 -19.07958 -17.87231 -17.46824 -17.02464 -16.76386 -16.23696 -15.77618 -15.54853 -15.13453 -14.69884 -14.36302 -14.19202 -14.06202 -13.84050 -13.72340 -13.64221 -13.45788 -13.09178 -12.95423 -12.70286 -12.54814 -12.38372 -12.25339 -11.91662 -11.83186 -11.71279 -11.53095 -11.40917 -11.29381 -11.04369 -10.80475 -10.52578 -10.33284 -10.21927 -10.08686 -9.94358 -9.83827 -9.62788 -9.42604 -9.00785 -8.55602 -8.51866 -6.76100 -5.86977 -3.27279 2.34486 2.57652 2.60672 2.97999 3.33181 3.42582 3.43954 3.95193 4.07602 4.37101 4.42479 4.59487 4.64363 4.71145 4.84288 4.87724 5.04669 5.13888 5.18484 5.29555 5.33702 5.34442 5.37358 5.44857 5.48976 5.54775 5.55545 5.63194 5.70844 5.75954 5.81746 5.86104 5.93767 6.00871 6.09106 6.17794 6.25126 6.32695 6.45822 6.55470 6.68071 6.78392 6.81210 6.92877 7.16851 7.47163 7.73993 7.87128 7.91343 8.15484 8.35299 9.13201 9.76416 10.32711 11.22078 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.002810 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.167385 B = 9961.678411 C =10584.885597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.621 5.621 4 C 0.119 3.881 5 C -0.117 4.117 6 H 0.116 0.884 7 C 0.549 3.451 8 O -0.545 6.545 9 N -0.638 5.638 10 C 0.105 3.895 11 C -0.112 4.112 12 C 0.126 3.874 13 C -0.080 4.080 14 C -0.134 4.134 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.067 0.933 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.192 3.808 26 C -0.144 4.144 27 C 0.521 3.479 28 O -0.530 6.530 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.018 0.982 45 H 0.053 0.947 46 H 0.254 0.746 47 H 0.092 0.908 48 H 0.027 0.973 49 H 0.109 0.891 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 -18.599 -3.315 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.355 5.355 4 C -0.004 4.004 5 C -0.139 4.139 6 H 0.134 0.866 7 C 0.338 3.662 8 O -0.424 6.424 9 N -0.372 5.372 10 C -0.019 4.019 11 C -0.115 4.115 12 C 0.005 3.995 13 C -0.118 4.118 14 C -0.173 4.173 15 C 0.018 3.982 16 N -0.313 5.313 17 C -0.378 4.378 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.549 5.549 21 Si 0.729 3.271 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.065 3.935 26 C -0.184 4.184 27 C 0.309 3.691 28 O -0.407 6.407 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.110 0.890 48 H 0.045 0.955 49 H 0.127 0.873 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.198 -19.039 -3.124 19.331 hybrid contribution -0.711 0.691 0.034 0.992 sum -1.909 -18.348 -3.090 18.704 Atomic orbital electron populations 1.22175 0.95690 1.02365 1.02718 1.21349 0.94527 0.80854 1.03150 1.48382 1.65936 1.13946 1.07275 1.21969 1.00543 0.91128 0.86800 1.22148 1.02533 0.93987 0.95228 0.86568 1.19478 0.79742 0.83047 0.83969 1.90706 1.35290 1.85604 1.30783 1.49814 1.44790 1.07486 1.35129 1.23248 0.90525 0.95039 0.93041 1.22612 0.94264 0.98215 0.96381 1.23017 0.97376 0.78271 1.00834 1.21025 0.97069 0.97509 0.96149 1.22017 1.00815 0.97133 0.97353 1.20887 0.91294 0.93937 0.92058 1.44041 1.39255 1.16035 1.31941 1.19217 1.26946 0.98743 0.92920 0.91531 1.24992 1.00814 0.98412 0.95367 1.70010 1.42647 1.45609 0.96596 0.86272 0.81874 0.81346 0.77614 1.20258 1.21546 1.21734 1.20634 1.01265 0.82141 0.89436 1.22346 1.04397 0.96519 0.95148 1.20781 0.76672 0.87275 0.84384 1.90728 1.53815 1.75102 1.21038 0.91369 0.92199 0.92199 0.90224 0.89951 0.89157 0.89702 0.89093 0.90833 0.90876 0.89414 0.92073 0.93373 0.92980 0.92319 0.96372 0.92827 0.93617 0.89005 0.95520 0.87308 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.12 0.99 6.65 -4.04 -0.03 0.96 16 3 N -0.62 -6.22 2.93 -172.41 -0.51 -6.72 16 4 C 0.12 1.11 6.67 -3.12 -0.02 1.09 16 5 C -0.12 -1.16 3.40 -90.14 -0.31 -1.47 16 6 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 7 C 0.55 7.52 7.32 -10.98 -0.08 7.44 16 8 O -0.55 -9.34 16.35 5.56 0.09 -9.25 16 9 N -0.64 -8.91 3.44 -184.97 -0.64 -9.55 16 10 C 0.10 1.34 7.18 -8.05 -0.06 1.28 16 11 C -0.11 -1.77 0.95 -154.89 -0.15 -1.92 16 12 C 0.13 2.07 7.65 -8.20 -0.06 2.00 16 13 C -0.08 -1.17 5.10 -26.87 -0.14 -1.31 16 14 C -0.13 -2.11 6.02 -26.54 -0.16 -2.27 16 15 C 0.14 2.77 6.45 -3.75 -0.02 2.74 16 16 N -0.59 -13.38 3.01 -172.51 -0.52 -13.90 16 17 C -0.25 -6.35 9.60 -15.06 -0.14 -6.49 16 18 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 19 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 20 N -0.90 -24.42 11.16 55.49 0.62 -23.80 16 21 Si 0.90 20.78 29.59 -169.99 -5.03 15.75 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.19 3.94 4.48 -3.85 -0.02 3.92 16 26 C -0.14 -1.47 5.94 -26.74 -0.16 -1.63 16 27 C 0.52 6.38 8.02 -10.86 -0.09 6.29 16 28 O -0.53 -8.38 17.59 5.56 0.10 -8.28 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 34 H 0.09 0.98 7.06 -51.93 -0.37 0.62 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.07 1.27 7.46 -51.93 -0.39 0.88 16 39 H 0.09 1.54 7.96 -51.93 -0.41 1.13 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.67 7.96 -51.93 -0.41 0.25 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.98 7.47 -51.93 -0.39 0.60 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 46 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 47 H 0.09 2.13 5.93 -51.93 -0.31 1.83 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.11 1.19 7.89 -51.93 -0.41 0.78 16 50 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -31.16 395.54 -9.61 -40.77 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.55 Total: -0.66 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -1.14 Total: 9.67 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -1.04 Total: -53.97 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.19 Total: -17.52 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.16 -9.61 -40.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981801695.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.557 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds