Wall clock time and date at job start Tue Mar 31 2020 19:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47533 * 2 1 4 4 C 1.46770 * 124.34725 * 89.99912 * 3 2 1 5 5 C 1.54479 * 105.47079 * 162.96701 * 4 3 2 6 6 H 1.09001 * 110.96759 * 267.25845 * 5 4 3 7 7 C 1.50693 * 110.96981 * 143.53397 * 5 4 3 8 8 O 1.21285 * 120.00350 * 359.97438 * 7 5 4 9 9 N 1.34780 * 120.00339 * 179.97438 * 7 5 4 10 10 C 1.46493 * 120.00401 * 179.97438 * 9 7 5 11 11 C 1.53588 * 112.24669 * 297.65832 * 10 9 7 12 12 C 1.54218 * 106.67070 * 238.23782 * 11 10 9 13 13 C 1.54751 * 104.16283 * 335.05947 * 12 11 10 14 14 C 1.54227 * 103.22583 * 37.68687 * 13 12 11 15 15 H 1.08999 * 112.20428 * 85.29460 * 14 13 12 16 16 N 1.46983 * 108.98198 * 209.68878 * 14 13 12 17 17 C 1.36932 * 125.58012 * 294.43758 * 16 14 13 18 18 H 1.08002 * 120.00140 * 13.19687 * 17 16 14 19 19 C 1.38813 * 119.99977 * 193.20001 * 17 16 14 20 20 N 1.31615 * 120.00009 * 204.03902 * 19 17 16 21 21 Si 1.86797 * 119.99918 * 24.04189 * 19 17 16 22 22 H 1.48498 * 109.46900 * 269.99753 * 21 19 17 23 23 H 1.48497 * 109.47301 * 30.00186 * 21 19 17 24 24 H 1.48501 * 109.47113 * 149.99901 * 21 19 17 25 25 C 1.47372 * 108.83983 * 114.17353 * 16 14 13 26 26 C 1.54863 * 104.82155 * 335.57781 * 25 16 14 27 27 C 1.54630 * 101.76591 * 25.41304 * 5 4 3 28 28 C 1.34419 * 124.34847 * 269.97795 * 3 2 1 29 29 O 1.21278 * 124.94403 * 0.42944 * 28 3 2 30 30 H 1.08997 * 109.47441 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47185 * 300.00037 * 1 2 3 32 32 H 1.09008 * 109.47247 * 59.99777 * 1 2 3 33 33 H 1.09000 * 109.47185 * 239.99963 * 2 1 3 34 34 H 1.08998 * 109.47236 * 120.00232 * 2 1 3 35 35 H 1.08994 * 110.24657 * 43.96576 * 4 3 2 36 36 H 1.08999 * 110.24080 * 281.96479 * 4 3 2 37 37 H 0.97002 * 119.99150 * 0.02562 * 9 7 5 38 38 H 1.09000 * 110.01402 * 357.53786 * 11 10 9 39 39 H 1.08994 * 110.01978 * 118.93421 * 11 10 9 40 40 H 1.09008 * 110.49428 * 93.72942 * 12 11 10 41 41 H 1.09000 * 110.49385 * 216.25390 * 12 11 10 42 42 H 1.08998 * 110.67347 * 156.24344 * 13 12 11 43 43 H 1.09000 * 110.66949 * 279.21223 * 13 12 11 44 44 H 0.97001 * 120.00008 * 354.57843 * 20 19 17 45 45 H 1.08996 * 110.37077 * 94.41211 * 25 16 14 46 46 H 1.09003 * 110.36907 * 216.74635 * 25 16 14 47 47 H 1.09001 * 110.96899 * 155.19014 * 26 25 16 48 48 H 1.09001 * 110.97061 * 278.94885 * 26 25 16 49 49 H 1.09005 * 110.48298 * 93.88314 * 27 5 4 50 50 H 1.09004 * 110.48488 * 216.52256 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 1.2118 5 6 3.1750 3.3438 0.7488 6 1 4.2336 3.1028 0.8457 7 6 2.8382 4.5986 1.5123 8 8 1.9713 4.5784 2.3603 9 7 3.5004 5.7435 1.2529 10 6 3.1727 6.9635 1.9947 11 6 1.7246 7.4169 1.7575 12 6 1.7968 8.8482 1.1877 13 6 3.1501 9.3932 1.7037 14 6 4.0796 8.1653 1.6214 15 1 4.5201 8.0477 0.6313 16 7 5.1070 8.2724 2.6671 17 6 6.0842 9.2296 2.7289 18 1 6.0222 10.1060 2.1007 19 6 7.1545 9.0736 3.5988 20 7 7.8187 10.1286 4.0208 21 14 7.6523 7.3663 4.1705 22 1 6.9138 7.0255 5.4129 23 1 7.3264 6.3757 3.1133 24 1 9.1125 7.3406 4.4397 25 6 4.9093 7.1847 3.6416 26 6 3.4121 6.8088 3.5174 27 6 2.7703 3.4751 -0.7378 28 6 2.2716 2.0961 -1.1098 29 8 2.1220 1.6942 -2.2442 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.8321 1.5530 1.9385 36 1 1.3638 2.5310 1.6427 37 1 4.1935 5.7597 0.5744 38 1 1.2387 6.7543 1.0413 39 1 1.1748 7.4173 2.6986 40 1 1.7848 8.8262 0.0979 41 1 0.9712 9.4514 1.5653 42 1 3.5120 10.1957 1.0609 43 1 3.0583 9.7387 2.7334 44 1 7.6119 11.0066 3.6641 45 1 5.5371 6.3302 3.3890 46 1 5.1303 7.5341 4.6502 47 1 3.2402 5.7809 3.8368 48 1 2.7880 7.5008 4.0827 49 1 1.9756 4.2122 -0.8531 50 1 3.6338 3.7454 -1.3457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990974550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:48 Heat of formation + Delta-G solvation = -42.973937 kcal Electronic energy + Delta-G solvation = -30637.659448 eV Core-core repulsion = 26665.175319 eV Total energy + Delta-G solvation = -3972.484129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17520 -40.15699 -38.44810 -36.52585 -34.54228 -34.29211 -33.60848 -31.95119 -30.41090 -29.65324 -28.02162 -27.18254 -26.43618 -24.28260 -23.33262 -23.12284 -21.30113 -20.61779 -19.70860 -19.47045 -18.99054 -17.72649 -17.51923 -17.01282 -16.34134 -15.92163 -15.59690 -15.28001 -14.91349 -14.60921 -14.28463 -14.15673 -13.92181 -13.75846 -13.70404 -13.47724 -13.36362 -13.09060 -12.78913 -12.58814 -12.33025 -12.10087 -11.91236 -11.86064 -11.71402 -11.58046 -11.40626 -11.25355 -10.94082 -10.84919 -10.74359 -10.35933 -10.21114 -10.16851 -10.05701 -9.66733 -9.61106 -9.28608 -9.04547 -8.84926 -8.53270 -7.13177 -6.34027 -3.24415 2.28364 2.48590 2.61686 3.09603 3.39158 3.46710 3.62840 3.92477 4.03226 4.42625 4.54227 4.56003 4.62435 4.70631 4.82538 4.84730 4.93827 5.01810 5.08073 5.14406 5.16857 5.24580 5.33335 5.39159 5.46248 5.51542 5.52788 5.59423 5.61772 5.67784 5.82512 5.88230 5.91590 6.00095 6.04525 6.19143 6.20436 6.22662 6.31341 6.41008 6.53809 6.60628 6.69369 6.76971 6.82024 6.94080 7.51834 7.69178 7.85939 8.17537 8.31293 9.00653 9.55725 10.22302 11.13352 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.003227 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.280687 B = 8674.363350 C = 9414.116665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.126 4.126 6 H 0.118 0.882 7 C 0.526 3.474 8 O -0.531 6.531 9 N -0.701 5.701 10 C 0.158 3.842 11 C -0.110 4.110 12 C -0.125 4.125 13 C -0.126 4.126 14 C 0.163 3.837 15 H 0.052 0.948 16 N -0.601 5.601 17 C -0.324 4.324 18 H 0.075 0.925 19 C -0.019 4.019 20 N -0.922 5.922 21 Si 1.066 2.934 22 H -0.295 1.295 23 H -0.289 1.289 24 H -0.300 1.300 25 C 0.104 3.896 26 C -0.128 4.128 27 C -0.144 4.144 28 C 0.521 3.479 29 O -0.532 6.532 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.402 0.598 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.263 0.737 45 H 0.029 0.971 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.109 0.891 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 -16.158 -6.865 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.006 4.006 5 C -0.148 4.148 6 H 0.136 0.864 7 C 0.311 3.689 8 O -0.408 6.408 9 N -0.351 5.351 10 C 0.072 3.928 11 C -0.149 4.149 12 C -0.163 4.163 13 C -0.166 4.166 14 C 0.055 3.945 15 H 0.069 0.931 16 N -0.326 5.326 17 C -0.452 4.452 18 H 0.093 0.907 19 C -0.220 4.220 20 N -0.562 5.562 21 Si 0.898 3.102 22 H -0.223 1.223 23 H -0.216 1.216 24 H -0.228 1.228 25 C -0.021 4.021 26 C -0.167 4.167 27 C -0.185 4.185 28 C 0.308 3.692 29 O -0.408 6.408 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.128 0.872 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.839 -17.199 -5.839 22.243 hybrid contribution -0.576 0.844 -1.269 1.630 sum -13.415 -16.355 -7.109 22.315 Atomic orbital electron populations 1.22166 0.95661 1.02390 1.02680 1.21356 0.94533 0.80833 1.03205 1.48378 1.65782 1.13965 1.07276 1.21995 1.00657 0.91079 0.86823 1.22271 1.02846 0.94446 0.95265 0.86373 1.19923 0.81736 0.84068 0.83162 1.90704 1.31809 1.85054 1.33189 1.45874 1.39639 1.08970 1.40623 1.21661 0.94863 0.83706 0.92563 1.22262 0.94975 0.96204 1.01445 1.22371 0.98327 0.95703 0.99899 1.22754 0.93775 0.98283 1.01787 1.21686 0.88972 0.90839 0.92963 0.93082 1.44811 1.33304 1.32100 1.22435 1.19998 1.00725 0.98152 1.26278 0.90676 1.25842 0.94370 1.04871 0.96923 1.70904 1.47393 0.98993 1.38945 0.83817 0.75284 0.75485 0.75570 1.22267 1.21559 1.22840 1.22057 0.93636 0.91446 0.94924 1.23080 0.97709 1.01924 0.93989 1.22342 1.04361 0.96701 0.95054 1.20759 0.76741 0.87249 0.84403 1.90731 1.53881 1.75151 1.21076 0.91366 0.92166 0.92244 0.89973 0.90167 0.89688 0.88828 0.76290 0.92145 0.90996 0.92168 0.92035 0.92123 0.90738 0.92693 0.95340 0.92200 0.90544 0.90442 0.87238 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 37.15 0.38 -0.84 16 2 C 0.12 0.92 6.65 -4.04 -0.03 0.89 16 3 N -0.62 -5.69 2.93 -172.42 -0.51 -6.19 16 4 C 0.12 0.99 6.71 -3.12 -0.02 0.96 16 5 C -0.13 -1.08 3.54 -90.14 -0.32 -1.40 16 6 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 7 C 0.53 6.18 6.25 -10.99 -0.07 6.11 16 8 O -0.53 -7.68 13.33 5.55 0.07 -7.61 16 9 N -0.70 -8.80 5.23 -45.37 -0.24 -9.04 16 10 C 0.16 2.41 0.77 -129.38 -0.10 2.31 16 11 C -0.11 -1.52 5.30 -25.79 -0.14 -1.66 16 12 C -0.12 -1.67 6.83 -25.17 -0.17 -1.84 16 13 C -0.13 -2.12 6.21 -25.17 -0.16 -2.27 16 14 C 0.16 2.95 3.64 -65.91 -0.24 2.71 16 15 H 0.05 0.92 8.00 -51.93 -0.42 0.50 16 16 N -0.60 -13.59 2.91 -161.47 -0.47 -14.05 16 17 C -0.32 -8.74 10.18 -15.06 -0.15 -8.90 16 18 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 19 C -0.02 -0.55 5.42 -17.43 -0.09 -0.65 16 20 N -0.92 -28.15 13.70 55.49 0.76 -27.38 16 21 Si 1.07 25.97 24.69 -169.99 -4.20 21.78 16 22 H -0.29 -6.90 6.62 56.52 0.37 -6.52 16 23 H -0.29 -6.57 6.20 56.52 0.35 -6.22 16 24 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 25 C 0.10 2.18 4.69 -2.58 -0.01 2.17 16 26 C -0.13 -2.20 5.71 -24.74 -0.14 -2.34 16 27 C -0.14 -1.24 6.41 -26.74 -0.17 -1.41 16 28 C 0.52 5.81 8.02 -10.86 -0.09 5.73 16 29 O -0.53 -7.89 17.59 5.56 0.10 -7.79 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.90 6.96 -51.93 -0.36 0.54 16 37 H 0.40 4.39 8.53 -40.82 -0.35 4.05 16 38 H 0.06 0.80 7.61 -51.93 -0.39 0.41 16 39 H 0.07 1.03 7.37 -51.93 -0.38 0.65 16 40 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 44 H 0.26 7.94 8.73 -40.82 -0.36 7.58 16 45 H 0.03 0.61 5.58 -51.93 -0.29 0.32 16 46 H 0.06 1.36 6.22 -51.93 -0.32 1.04 16 47 H 0.08 1.28 6.54 -51.93 -0.34 0.94 16 48 H 0.08 1.33 7.62 -51.93 -0.40 0.93 16 49 H 0.11 0.94 7.89 -51.93 -0.41 0.53 16 50 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -33.43 383.43 -8.59 -42.02 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.37 Total: 2.92 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.52 Total: -0.42 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.45 Total: -56.67 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.17 Total: -15.40 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -4.20 Total: 21.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.43 -8.59 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990974550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.955 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds