Wall clock time and date at job start Tue Mar 31 2020 19:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46494 * 109.46792 * 2 1 4 4 C 1.46819 * 124.33695 * 270.01245 * 3 2 1 5 5 C 1.54479 * 105.44830 * 163.00276 * 4 3 2 6 6 H 1.09004 * 110.97226 * 267.23721 * 5 4 3 7 7 C 1.50694 * 110.97302 * 143.50878 * 5 4 3 8 8 O 1.21289 * 120.00041 * 3.08993 * 7 5 4 9 9 N 1.34777 * 120.00797 * 183.08955 * 7 5 4 10 10 C 1.46493 * 120.00726 * 179.97438 * 9 7 5 11 11 C 1.51232 * 111.06175 * 78.38153 * 10 9 7 12 12 C 1.55692 * 104.60637 * 84.54597 * 11 10 9 13 13 C 1.56284 * 105.93585 * 7.24371 * 12 11 10 14 14 C 1.50306 * 101.75789 * 24.05230 * 13 12 11 15 15 H 1.09001 * 107.29694 * 66.83411 * 14 13 12 16 16 N 1.42703 * 128.32465 * 198.32358 * 14 13 12 17 17 C 1.36945 * 127.09680 * 332.31679 * 16 14 13 18 18 H 1.07991 * 120.00262 * 359.93696 * 17 16 14 19 19 C 1.38819 * 119.99394 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99322 * 218.35220 * 19 17 16 21 21 Si 1.86796 * 120.00224 * 38.34773 * 19 17 16 22 22 H 1.48504 * 109.47162 * 174.12202 * 21 19 17 23 23 H 1.48501 * 109.47280 * 294.12268 * 21 19 17 24 24 H 1.48500 * 109.47135 * 54.12389 * 21 19 17 25 25 C 1.49290 * 105.79883 * 152.05409 * 16 14 13 26 26 C 1.52128 * 111.08787 * 298.99189 * 10 9 7 27 27 C 1.54629 * 101.79568 * 25.37215 * 5 4 3 28 28 C 1.34427 * 124.34962 * 89.97675 * 3 2 1 29 29 O 1.21281 * 124.93961 * 0.37422 * 28 3 2 30 30 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46935 * 299.99556 * 1 2 3 32 32 H 1.08994 * 109.47230 * 60.00149 * 1 2 3 33 33 H 1.09002 * 109.47200 * 239.99963 * 2 1 3 34 34 H 1.08995 * 109.46728 * 120.00007 * 2 1 3 35 35 H 1.09008 * 110.28264 * 44.00175 * 4 3 2 36 36 H 1.08998 * 110.24220 * 281.98791 * 4 3 2 37 37 H 0.97004 * 119.99193 * 0.02562 * 9 7 5 38 38 H 1.09001 * 110.40299 * 203.32542 * 11 10 9 39 39 H 1.08995 * 110.40844 * 325.75617 * 11 10 9 40 40 H 1.08995 * 110.15973 * 126.36436 * 12 11 10 41 41 H 1.09003 * 110.15448 * 248.06301 * 12 11 10 42 42 H 1.09004 * 110.97105 * 142.37727 * 13 12 11 43 43 H 1.09003 * 110.97315 * 266.14398 * 13 12 11 44 44 H 0.97005 * 120.00353 * 354.98048 * 20 19 17 45 45 H 1.08996 * 110.05170 * 110.84279 * 25 16 14 46 46 H 1.08997 * 110.04684 * 232.26876 * 25 16 14 47 47 H 1.09005 * 111.15292 * 167.50199 * 26 10 9 48 48 H 1.09001 * 111.19210 * 43.28983 * 26 10 9 49 49 H 1.09002 * 110.48658 * 93.90251 * 27 5 4 50 50 H 1.09001 * 110.48212 * 216.54308 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2941 2.1621 -1.2123 5 6 2.3530 3.6345 -0.7488 6 1 1.3785 4.1132 -0.8453 7 6 3.4039 4.3986 -1.5121 8 8 4.0259 3.8531 -2.3991 9 7 3.6529 5.6881 -1.2093 10 6 4.6749 6.4307 -1.9509 11 6 4.1529 6.8749 -3.2990 12 6 3.4041 8.2089 -3.0100 13 6 3.7028 8.5535 -1.5151 14 6 4.9924 7.8173 -1.2829 15 1 5.7549 8.2978 -1.8961 16 7 5.5888 7.4471 -0.0404 17 6 5.4454 8.0799 1.1656 18 1 4.8257 8.9610 1.2428 19 6 6.0974 7.5892 2.2886 20 7 5.4965 7.6090 3.4594 21 14 7.8273 6.9006 2.1380 22 1 8.3504 6.5763 3.4895 23 1 7.7993 5.6686 1.3093 24 1 8.7074 7.9095 1.4955 25 6 6.3958 6.2239 -0.3254 26 6 6.0450 5.7907 -1.7849 27 6 2.7500 3.4823 0.7379 28 6 2.2707 2.0965 1.1098 29 8 2.1334 1.6901 2.2443 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.4929 2.0272 -1.9391 36 1 3.2496 1.8639 -1.6438 37 1 3.1557 6.1242 -0.4997 38 1 4.9792 7.0447 -3.9893 39 1 3.4649 6.1326 -3.7036 40 1 3.7798 8.9991 -3.6599 41 1 2.3323 8.0780 -3.1594 42 1 3.8332 9.6273 -1.3809 43 1 2.9171 8.1729 -0.8625 44 1 4.6284 8.0319 3.5520 45 1 7.4590 6.4513 -0.2484 46 1 6.1320 5.4309 0.3743 47 1 6.7595 6.2000 -2.4991 48 1 5.9858 4.7056 -1.8696 49 1 3.8314 3.5558 0.8534 50 1 2.2483 4.2353 1.3456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990974552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:54 Heat of formation + Delta-G solvation = -20.709410 kcal Electronic energy + Delta-G solvation = -31303.851145 eV Core-core repulsion = 27332.332478 eV Total energy + Delta-G solvation = -3971.518667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08157 -40.26712 -38.33477 -36.27319 -34.71921 -34.06052 -33.17714 -32.10581 -30.37047 -29.55937 -27.74803 -27.24070 -26.35030 -24.22716 -23.48488 -22.91996 -21.31220 -20.45365 -19.51019 -19.41424 -18.91127 -17.52539 -17.12388 -17.00545 -15.94695 -15.88646 -15.21845 -15.06612 -14.93355 -14.64964 -14.20440 -14.10460 -13.88798 -13.80493 -13.67692 -13.28047 -13.10629 -12.89237 -12.74259 -12.45871 -12.21659 -12.12877 -11.93155 -11.69113 -11.50138 -11.39478 -11.26021 -11.08462 -10.98276 -10.91705 -10.78853 -10.37220 -10.22781 -10.01238 -9.84037 -9.75022 -9.35798 -9.21666 -8.83334 -8.67545 -8.23580 -7.18698 -6.44859 -3.14825 2.56407 2.74752 2.82343 3.37165 3.42688 3.53611 3.69158 4.17865 4.31602 4.34003 4.59631 4.70276 4.76884 4.86444 4.91918 4.97165 5.02842 5.14618 5.16161 5.20390 5.33056 5.38211 5.47960 5.51367 5.52702 5.57010 5.62190 5.68153 5.77518 5.79447 5.82296 5.86460 5.93253 5.99888 6.10708 6.14170 6.19631 6.30685 6.41964 6.43001 6.47348 6.64775 6.68670 6.83648 6.98770 7.00025 7.69695 7.80650 8.13216 8.27568 8.43097 8.94539 9.61679 10.28099 11.04458 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.004537 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.090648 B = 6170.520136 C = 7684.990517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.623 5.623 4 C 0.121 3.879 5 C -0.124 4.124 6 H 0.114 0.886 7 C 0.527 3.473 8 O -0.544 6.544 9 N -0.685 5.685 10 C 0.131 3.869 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.113 4.113 14 C 0.162 3.838 15 H 0.021 0.979 16 N -0.587 5.587 17 C -0.352 4.352 18 H 0.079 0.921 19 C -0.004 4.004 20 N -0.895 5.895 21 Si 1.029 2.971 22 H -0.296 1.296 23 H -0.277 1.277 24 H -0.295 1.295 25 C 0.126 3.874 26 C -0.127 4.127 27 C -0.144 4.144 28 C 0.522 3.478 29 O -0.528 6.528 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.405 0.595 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.265 0.735 45 H 0.032 0.968 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.113 0.887 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -8.417 -13.983 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.000 4.000 3 N -0.358 5.358 4 C -0.002 4.002 5 C -0.146 4.146 6 H 0.132 0.868 7 C 0.311 3.689 8 O -0.422 6.422 9 N -0.335 5.335 10 C 0.043 3.957 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.151 4.151 14 C 0.052 3.948 15 H 0.038 0.962 16 N -0.311 5.311 17 C -0.477 4.477 18 H 0.097 0.903 19 C -0.207 4.207 20 N -0.533 5.533 21 Si 0.861 3.139 22 H -0.223 1.223 23 H -0.204 1.204 24 H -0.223 1.223 25 C 0.002 3.998 26 C -0.166 4.166 27 C -0.185 4.185 28 C 0.310 3.690 29 O -0.404 6.404 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.131 0.869 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.566 -9.741 -13.009 17.927 hybrid contribution -1.305 1.203 -0.562 1.862 sum -8.871 -8.539 -13.571 18.324 Atomic orbital electron populations 1.22164 0.95840 1.02252 1.02491 1.21318 0.94265 0.81192 1.03187 1.48383 1.66231 1.13881 1.07295 1.21941 1.03178 0.88319 0.86781 1.22226 1.00321 0.96406 0.95630 0.86831 1.19916 0.83438 0.82075 0.83442 1.90658 1.50783 1.68612 1.32152 1.45675 1.39056 1.10914 1.37888 1.21474 0.87221 0.95038 0.91921 1.21882 1.00177 0.96790 0.96030 1.22826 0.99777 0.96746 0.96175 1.21769 0.97867 1.00257 0.95221 1.20625 0.94145 0.91343 0.88725 0.96232 1.43943 1.53849 1.28274 1.05078 1.19769 1.30455 1.13449 0.84074 0.90311 1.25517 1.03897 0.99315 0.92001 1.70994 1.17285 1.37708 1.27341 0.84411 0.77896 0.76747 0.74867 1.22282 1.20436 1.22275 1.22606 0.94437 0.89402 0.93354 1.22564 0.94774 1.01726 0.97505 1.22351 1.05055 0.96318 0.94739 1.20826 0.76223 0.87633 0.84351 1.90731 1.53156 1.75450 1.21077 0.91482 0.92186 0.92426 0.90309 0.89995 0.90092 0.89027 0.75894 0.90980 0.91490 0.91829 0.92053 0.91636 0.91604 0.92463 0.95051 0.93486 0.90902 0.89878 0.86887 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.12 1.16 6.65 -4.04 -0.03 1.13 16 3 N -0.62 -7.29 2.93 -172.37 -0.51 -7.80 16 4 C 0.12 1.26 6.69 -3.09 -0.02 1.24 16 5 C -0.12 -1.39 3.54 -90.14 -0.32 -1.71 16 6 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 7 C 0.53 7.33 6.44 -10.99 -0.07 7.26 16 8 O -0.54 -8.76 13.66 5.55 0.08 -8.69 16 9 N -0.69 -10.13 4.51 -46.76 -0.21 -10.35 16 10 C 0.13 2.07 0.42 -130.90 -0.05 2.02 16 11 C -0.11 -1.47 6.15 -26.19 -0.16 -1.63 16 12 C -0.12 -1.43 6.93 -23.53 -0.16 -1.60 16 13 C -0.11 -1.72 6.47 -26.31 -0.17 -1.89 16 14 C 0.16 2.95 2.64 -69.02 -0.18 2.77 16 15 H 0.02 0.38 7.95 -51.93 -0.41 -0.03 16 16 N -0.59 -13.09 3.12 -163.02 -0.51 -13.60 16 17 C -0.35 -9.24 10.33 -15.05 -0.16 -9.40 16 18 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 19 C 0.00 -0.10 5.38 -17.43 -0.09 -0.19 16 20 N -0.89 -26.55 13.70 55.49 0.76 -25.79 16 21 Si 1.03 25.36 25.87 -169.99 -4.40 20.96 16 22 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.28 -6.33 5.08 56.52 0.29 -6.04 16 24 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.13 2.65 4.49 -0.76 0.00 2.64 16 26 C -0.13 -2.20 6.10 -25.44 -0.16 -2.35 16 27 C -0.14 -1.93 6.40 -26.74 -0.17 -2.10 16 28 C 0.52 7.74 8.02 -10.86 -0.09 7.65 16 29 O -0.53 -9.88 17.59 5.56 0.10 -9.78 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 35 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.09 1.07 7.01 -51.93 -0.36 0.71 16 37 H 0.41 6.07 7.60 -40.82 -0.31 5.76 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.90 7.73 -51.93 -0.40 0.49 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.02 7.20 -51.93 -0.37 0.64 16 44 H 0.26 7.74 8.73 -40.82 -0.36 7.39 16 45 H 0.03 0.69 5.40 -51.93 -0.28 0.41 16 46 H 0.05 1.06 7.11 -51.93 -0.37 0.70 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.08 1.47 6.28 -51.93 -0.33 1.14 16 49 H 0.11 1.72 7.89 -51.93 -0.41 1.31 16 50 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -32.24 384.15 -8.78 -41.02 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.42 Total: 5.39 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.45 Total: 2.83 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.46 Total: -57.53 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.40 Total: 20.96 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.24 -8.78 -41.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990974552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.310 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds