Wall clock time and date at job start Tue Mar 31 2020 19:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46494 * 109.46792 * 2 1 4 4 C 1.46819 * 124.33695 * 270.01245 * 3 2 1 5 5 C 1.54479 * 105.44830 * 163.00276 * 4 3 2 6 6 H 1.09004 * 110.97226 * 267.23721 * 5 4 3 7 7 C 1.50694 * 110.97302 * 143.50878 * 5 4 3 8 8 O 1.21289 * 120.00041 * 3.08993 * 7 5 4 9 9 N 1.34777 * 120.00797 * 183.08955 * 7 5 4 10 10 C 1.46493 * 120.00726 * 179.97438 * 9 7 5 11 11 C 1.51232 * 111.06175 * 78.38153 * 10 9 7 12 12 C 1.55692 * 104.60637 * 84.54597 * 11 10 9 13 13 C 1.56284 * 105.93585 * 7.24371 * 12 11 10 14 14 C 1.50306 * 101.75789 * 24.05230 * 13 12 11 15 15 H 1.09001 * 107.29694 * 66.83411 * 14 13 12 16 16 N 1.42703 * 128.32465 * 198.32358 * 14 13 12 17 17 C 1.36945 * 127.09680 * 332.31679 * 16 14 13 18 18 H 1.07991 * 120.00262 * 359.93696 * 17 16 14 19 19 C 1.38819 * 119.99394 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99322 * 218.35220 * 19 17 16 21 21 Si 1.86796 * 120.00224 * 38.34773 * 19 17 16 22 22 H 1.48504 * 109.47162 * 174.12202 * 21 19 17 23 23 H 1.48501 * 109.47280 * 294.12268 * 21 19 17 24 24 H 1.48500 * 109.47135 * 54.12389 * 21 19 17 25 25 C 1.49290 * 105.79883 * 152.05409 * 16 14 13 26 26 C 1.52128 * 111.08787 * 298.99189 * 10 9 7 27 27 C 1.54629 * 101.79568 * 25.37215 * 5 4 3 28 28 C 1.34427 * 124.34962 * 89.97675 * 3 2 1 29 29 O 1.21281 * 124.93961 * 0.37422 * 28 3 2 30 30 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46935 * 299.99556 * 1 2 3 32 32 H 1.08994 * 109.47230 * 60.00149 * 1 2 3 33 33 H 1.09002 * 109.47200 * 239.99963 * 2 1 3 34 34 H 1.08995 * 109.46728 * 120.00007 * 2 1 3 35 35 H 1.09008 * 110.28264 * 44.00175 * 4 3 2 36 36 H 1.08998 * 110.24220 * 281.98791 * 4 3 2 37 37 H 0.97004 * 119.99193 * 0.02562 * 9 7 5 38 38 H 1.09001 * 110.40299 * 203.32542 * 11 10 9 39 39 H 1.08995 * 110.40844 * 325.75617 * 11 10 9 40 40 H 1.08995 * 110.15973 * 126.36436 * 12 11 10 41 41 H 1.09003 * 110.15448 * 248.06301 * 12 11 10 42 42 H 1.09004 * 110.97105 * 142.37727 * 13 12 11 43 43 H 1.09003 * 110.97315 * 266.14398 * 13 12 11 44 44 H 0.97005 * 120.00353 * 354.98048 * 20 19 17 45 45 H 1.08996 * 110.05170 * 110.84279 * 25 16 14 46 46 H 1.08997 * 110.04684 * 232.26876 * 25 16 14 47 47 H 1.09005 * 111.15292 * 167.50199 * 26 10 9 48 48 H 1.09001 * 111.19210 * 43.28983 * 26 10 9 49 49 H 1.09002 * 110.48658 * 93.90251 * 27 5 4 50 50 H 1.09001 * 110.48212 * 216.54308 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2941 2.1621 -1.2123 5 6 2.3530 3.6345 -0.7488 6 1 1.3785 4.1132 -0.8453 7 6 3.4039 4.3986 -1.5121 8 8 4.0259 3.8531 -2.3991 9 7 3.6529 5.6881 -1.2093 10 6 4.6749 6.4307 -1.9509 11 6 4.1529 6.8749 -3.2990 12 6 3.4041 8.2089 -3.0100 13 6 3.7028 8.5535 -1.5151 14 6 4.9924 7.8173 -1.2829 15 1 5.7549 8.2978 -1.8961 16 7 5.5888 7.4471 -0.0404 17 6 5.4454 8.0799 1.1656 18 1 4.8257 8.9610 1.2428 19 6 6.0974 7.5892 2.2886 20 7 5.4965 7.6090 3.4594 21 14 7.8273 6.9006 2.1380 22 1 8.3504 6.5763 3.4895 23 1 7.7993 5.6686 1.3093 24 1 8.7074 7.9095 1.4955 25 6 6.3958 6.2239 -0.3254 26 6 6.0450 5.7907 -1.7849 27 6 2.7500 3.4823 0.7379 28 6 2.2707 2.0965 1.1098 29 8 2.1334 1.6901 2.2443 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.4929 2.0272 -1.9391 36 1 3.2496 1.8639 -1.6438 37 1 3.1557 6.1242 -0.4997 38 1 4.9792 7.0447 -3.9893 39 1 3.4649 6.1326 -3.7036 40 1 3.7798 8.9991 -3.6599 41 1 2.3323 8.0780 -3.1594 42 1 3.8332 9.6273 -1.3809 43 1 2.9171 8.1729 -0.8625 44 1 4.6284 8.0319 3.5520 45 1 7.4590 6.4513 -0.2484 46 1 6.1320 5.4309 0.3743 47 1 6.7595 6.2000 -2.4991 48 1 5.9858 4.7056 -1.8696 49 1 3.8314 3.5558 0.8534 50 1 2.2483 4.2353 1.3456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990974552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:53 Heat of formation + Delta-G solvation = -42.391253 kcal Electronic energy + Delta-G solvation = -31304.791341 eV Core-core repulsion = 27332.332478 eV Total energy + Delta-G solvation = -3972.458862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27478 -41.45732 -39.57631 -37.43333 -36.31192 -35.00220 -34.42694 -33.91524 -31.78329 -30.57388 -28.78948 -28.68836 -27.68707 -25.45432 -24.99527 -23.88188 -22.77253 -21.55326 -21.03220 -20.48801 -20.13352 -19.09186 -18.53894 -18.03617 -17.28864 -16.99805 -16.66061 -16.32426 -16.20624 -15.93300 -15.60215 -15.32213 -15.10628 -15.04695 -14.79105 -14.71919 -14.26237 -14.14598 -13.93586 -13.71508 -13.45681 -13.34601 -12.99228 -12.88481 -12.74211 -12.53359 -12.44019 -12.40612 -12.29939 -12.11518 -12.03490 -11.99231 -11.81135 -11.39853 -11.28522 -11.13507 -10.97919 -10.56212 -10.29648 -9.92651 -9.79675 -9.11092 -8.62653 -5.24528 1.40088 1.43433 1.50586 1.62324 1.68407 1.86806 2.26012 2.54955 2.88752 3.06419 3.17065 3.33260 3.59649 3.71739 3.82397 3.84645 4.02524 4.06990 4.11700 4.20003 4.23444 4.31468 4.36938 4.46181 4.47125 4.53176 4.55151 4.59182 4.71827 4.76327 4.81812 4.82084 4.90951 4.93150 4.94421 4.96476 5.03514 5.09768 5.20140 5.23880 5.26935 5.36813 5.48878 5.54116 5.72496 5.78150 5.97500 6.14597 6.62636 6.83859 7.01993 7.27282 7.61380 8.29499 8.88584 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.004537 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.090648 B = 6170.520136 C = 7684.990517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 N -0.612 5.612 4 C 0.124 3.876 5 C -0.110 4.110 6 H 0.146 0.854 7 C 0.530 3.470 8 O -0.561 6.561 9 N -0.690 5.690 10 C 0.142 3.858 11 C -0.103 4.103 12 C -0.102 4.102 13 C -0.112 4.112 14 C 0.142 3.858 15 H 0.021 0.979 16 N -0.601 5.601 17 C -0.323 4.323 18 H 0.057 0.943 19 C -0.056 4.056 20 N -0.936 5.936 21 Si 1.063 2.937 22 H -0.311 1.311 23 H -0.253 1.253 24 H -0.287 1.287 25 C 0.122 3.878 26 C -0.118 4.118 27 C -0.142 4.142 28 C 0.514 3.486 29 O -0.578 6.578 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.403 0.597 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.253 0.747 45 H 0.026 0.974 46 H 0.024 0.976 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 -9.216 -17.964 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.007 4.007 3 N -0.346 5.346 4 C 0.002 3.998 5 C -0.132 4.132 6 H 0.164 0.836 7 C 0.316 3.684 8 O -0.440 6.440 9 N -0.340 5.340 10 C 0.054 3.946 11 C -0.142 4.142 12 C -0.140 4.140 13 C -0.151 4.151 14 C 0.033 3.967 15 H 0.039 0.961 16 N -0.325 5.325 17 C -0.451 4.451 18 H 0.075 0.925 19 C -0.254 4.254 20 N -0.578 5.578 21 Si 0.891 3.109 22 H -0.239 1.239 23 H -0.178 1.178 24 H -0.215 1.215 25 C -0.002 4.002 26 C -0.156 4.156 27 C -0.183 4.183 28 C 0.303 3.697 29 O -0.458 6.458 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.239 0.761 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.110 0.890 48 H 0.099 0.901 49 H 0.108 0.892 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.648 -10.554 -17.097 21.874 hybrid contribution -0.982 1.490 0.608 1.885 sum -9.629 -9.064 -16.489 21.137 Atomic orbital electron populations 1.22104 0.94493 1.03449 1.01946 1.21581 0.95360 0.79913 1.03854 1.48503 1.64641 1.14606 1.06803 1.22060 1.04120 0.87174 0.86483 1.22224 1.00801 0.97062 0.93096 0.83617 1.20210 0.83458 0.81579 0.83155 1.90653 1.51482 1.68788 1.33122 1.45747 1.38864 1.11445 1.37907 1.21446 0.86989 0.92986 0.93165 1.21878 1.00753 0.97252 0.94312 1.22752 1.01053 0.96574 0.93610 1.21804 0.96082 0.99527 0.97685 1.20935 0.95269 0.93774 0.86682 0.96118 1.43920 1.54707 1.28557 1.05337 1.19651 1.27874 1.11923 0.85663 0.92520 1.26351 1.06150 1.00889 0.91995 1.71087 1.17400 1.40751 1.28569 0.83957 0.74837 0.77656 0.74406 1.23893 1.17839 1.21464 1.22613 0.93858 0.88183 0.95522 1.22508 0.96304 1.01699 0.95109 1.22249 1.03488 0.95866 0.96678 1.21027 0.76046 0.88306 0.84366 1.90697 1.55557 1.76453 1.23071 0.89498 0.94597 0.90964 0.87332 0.91659 0.86567 0.89892 0.76099 0.89739 0.90797 0.90070 0.90023 0.92236 0.92170 0.93693 0.95652 0.95748 0.88962 0.90057 0.89199 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 71.98 0.74 -1.56 16 2 C 0.11 1.95 6.65 86.38 0.57 2.52 16 3 N -0.61 -13.38 2.93 -817.84 -2.40 -15.78 16 4 C 0.12 2.21 6.69 86.82 0.58 2.79 16 5 C -0.11 -2.21 3.54 -10.48 -0.04 -2.25 16 6 H 0.15 2.05 8.14 -2.38 -0.02 2.03 16 7 C 0.53 13.53 6.44 87.66 0.56 14.09 16 8 O -0.56 -16.52 13.66 -3.06 -0.04 -16.56 16 9 N -0.69 -19.12 4.51 -420.24 -1.89 -21.02 16 10 C 0.14 4.14 0.42 4.20 0.00 4.14 16 11 C -0.10 -2.33 6.15 30.95 0.19 -2.14 16 12 C -0.10 -2.08 6.93 32.67 0.23 -1.86 16 13 C -0.11 -3.22 6.47 30.87 0.20 -3.02 16 14 C 0.14 4.95 2.64 46.28 0.12 5.08 16 15 H 0.02 0.76 7.95 -2.39 -0.02 0.74 16 16 N -0.60 -26.66 3.12 -669.69 -2.09 -28.75 16 17 C -0.32 -17.35 10.33 84.03 0.87 -16.48 16 18 H 0.06 3.25 8.06 -2.92 -0.02 3.23 16 19 C -0.06 -3.20 5.38 84.86 0.46 -2.74 16 20 N -0.94 -57.85 13.70 21.65 0.30 -57.55 16 21 Si 1.06 52.41 25.87 68.60 1.77 54.18 16 22 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 23 H -0.25 -11.35 5.08 99.48 0.51 -10.84 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 25 C 0.12 5.05 4.49 86.96 0.39 5.44 16 26 C -0.12 -3.82 6.10 31.43 0.19 -3.63 16 27 C -0.14 -3.83 6.40 30.59 0.20 -3.63 16 28 C 0.51 15.37 8.02 87.90 0.71 16.08 16 29 O -0.58 -22.50 17.59 -3.03 -0.05 -22.55 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.36 7.92 -2.39 -0.02 1.34 16 35 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.71 7.01 -2.39 -0.02 1.70 16 37 H 0.40 11.62 7.60 -92.71 -0.70 10.92 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.63 7.73 -2.39 -0.02 1.61 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.06 1.78 7.20 -2.39 -0.02 1.76 16 44 H 0.25 15.59 8.73 -92.70 -0.81 14.78 16 45 H 0.03 1.09 5.40 -2.39 -0.01 1.08 16 46 H 0.02 1.11 7.11 -2.39 -0.02 1.09 16 47 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 48 H 0.08 2.71 6.28 -2.39 -0.01 2.69 16 49 H 0.09 2.85 7.89 -2.39 -0.02 2.83 16 50 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -73.32 384.15 1.55 -71.77 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.01 Total: 23.42 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.97 Total: 12.83 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -6.09 Total: -123.09 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.10 Total: -39.11 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 1.77 Total: 54.18 kcal Total: -73.32 1.55 -71.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990974552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.377 kcal (2) G-P(sol) polarization free energy of solvation -73.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds