Wall clock time and date at job start Tue Mar 31 2020 19:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46935 * 2 1 4 4 C 1.34777 * 120.00311 * 90.00294 * 3 2 1 5 5 O 1.21605 * 120.00310 * 180.02562 * 4 3 2 6 6 C 1.47396 * 119.99635 * 359.97438 * 4 3 2 7 7 C 1.47100 * 128.56487 * 89.67850 * 6 4 3 8 8 C 1.50703 * 127.33478 * 0.24049 * 7 6 4 9 9 N 1.30015 * 105.33119 * 180.26014 * 7 6 4 10 10 O 1.20663 * 112.29996 * 359.97438 * 9 7 6 11 11 C 1.33491 * 113.15613 * 0.02562 * 10 9 7 12 12 C 1.50703 * 126.82571 * 179.97438 * 11 10 9 13 13 C 1.46507 * 119.99947 * 269.99585 * 3 2 1 14 14 H 1.09001 * 110.21104 * 1.94000 * 13 3 2 15 15 C 1.50130 * 110.24783 * 124.02022 * 13 3 2 16 16 C 1.54840 * 110.81591 * 216.66077 * 15 13 3 17 17 C 1.54904 * 110.13908 * 321.13030 * 16 15 13 18 18 N 1.43433 * 116.08431 * 318.64599 * 17 16 15 19 19 C 1.36933 * 120.53577 * 271.54895 * 18 17 16 20 20 H 1.07998 * 120.00678 * 140.23890 * 19 18 17 21 21 C 1.38821 * 119.99811 * 320.23556 * 19 18 17 22 22 N 1.31612 * 119.99949 * 156.32270 * 21 19 18 23 23 Si 1.86802 * 119.99951 * 336.32181 * 21 19 18 24 24 H 1.48498 * 109.46922 * 95.57291 * 23 21 19 25 25 H 1.48490 * 109.47098 * 215.57272 * 23 21 19 26 26 H 1.48504 * 109.47100 * 335.57436 * 23 21 19 27 27 C 1.50166 * 118.92607 * 91.56116 * 18 17 16 28 28 C 1.46233 * 107.53453 * 289.59151 * 27 18 17 29 29 H 1.09003 * 109.46597 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46796 * 300.00350 * 1 2 3 31 31 H 1.09005 * 109.46719 * 60.00324 * 1 2 3 32 32 H 1.08997 * 109.47268 * 240.00242 * 2 1 3 33 33 H 1.09000 * 109.47168 * 119.99666 * 2 1 3 34 34 H 1.08998 * 109.47393 * 90.00164 * 8 7 6 35 35 H 1.09004 * 109.47046 * 210.00107 * 8 7 6 36 36 H 1.08999 * 109.47011 * 329.99902 * 8 7 6 37 37 H 1.08998 * 109.46595 * 270.01318 * 12 11 10 38 38 H 1.08990 * 109.47184 * 30.01808 * 12 11 10 39 39 H 1.09003 * 109.46559 * 150.02023 * 12 11 10 40 40 H 1.08999 * 109.20658 * 337.00350 * 15 13 3 41 41 H 1.08997 * 109.20806 * 96.31321 * 15 13 3 42 42 H 1.08998 * 109.36212 * 200.93018 * 16 15 13 43 43 H 1.09001 * 109.36091 * 81.33533 * 16 15 13 44 44 H 1.09002 * 108.16007 * 196.92401 * 17 16 15 45 45 H 1.09007 * 107.99696 * 80.23881 * 17 16 15 46 46 H 0.97006 * 120.00246 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.84575 * 170.08472 * 27 18 17 48 48 H 1.08995 * 109.84540 * 49.10357 * 27 18 17 49 49 H 1.08995 * 108.52511 * 297.16840 * 28 27 18 50 50 H 1.09002 * 108.39881 * 179.56257 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0167 1.1672 5 8 2.6479 3.1633 1.1672 6 6 1.9969 1.3220 2.4436 7 6 2.9262 0.5007 3.2348 8 6 4.3644 0.1835 2.9155 9 7 2.2423 0.1065 4.2679 10 8 1.1094 0.5215 4.2526 11 6 0.8415 1.2770 3.1852 12 6 -0.4683 1.9471 2.8586 13 6 2.2626 2.0719 -1.2688 14 1 1.9976 1.4262 -2.1061 15 6 1.4759 3.3494 -1.3248 16 6 0.9558 3.6128 -2.7592 17 6 2.0302 3.2077 -3.7990 18 7 3.3828 3.5617 -3.4788 19 6 3.8881 4.7807 -3.8447 20 1 4.5342 5.3221 -3.1697 21 6 3.5699 5.3205 -5.0834 22 7 3.6370 6.6214 -5.2712 23 14 3.0464 4.2004 -6.4837 24 1 1.5638 4.1376 -6.5395 25 1 3.5678 4.7355 -7.7670 26 1 3.5914 2.8376 -6.2577 27 6 4.2358 2.5739 -2.7362 28 6 3.7254 2.4919 -1.3682 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0104 0.9433 3.3553 35 1 4.6208 -0.7932 3.3260 36 1 4.5023 0.1708 1.8343 37 1 -1.0830 1.2721 2.2631 38 1 -0.9904 2.1942 3.7828 39 1 -0.2784 2.8596 2.2933 40 1 0.6282 3.2787 -0.6433 41 1 2.1144 4.1774 -1.0171 42 1 0.7259 4.6723 -2.8714 43 1 0.0510 3.0290 -2.9284 44 1 1.7737 3.6722 -4.7511 45 1 1.9834 2.1262 -3.9277 46 1 3.4143 6.9987 -6.1367 47 1 5.2713 2.9139 -2.7250 48 1 4.1716 1.5965 -3.2143 49 1 3.8381 3.4684 -0.8975 50 1 4.3307 1.7715 -0.8178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997916837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:00 Heat of formation + Delta-G solvation = 58.824547 kcal Electronic energy + Delta-G solvation = -31388.237056 eV Core-core repulsion = 27420.167240 eV Total energy + Delta-G solvation = -3968.069816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.06285 -40.36211 -37.73213 -35.83452 -34.78092 -33.95692 -33.01896 -31.86248 -31.27099 -29.98412 -29.00353 -28.23260 -26.30205 -25.20064 -23.92998 -23.28448 -22.98654 -20.98451 -20.34936 -19.68705 -19.01650 -17.99829 -17.42395 -16.58276 -16.36353 -16.30614 -15.15546 -15.06901 -14.57056 -14.55021 -14.32846 -14.01792 -13.90286 -13.68112 -13.53742 -13.37124 -13.28907 -13.05322 -12.98283 -12.70722 -12.65272 -12.48811 -12.20147 -12.02575 -11.77756 -11.67135 -11.30990 -11.29616 -10.99117 -10.70629 -10.57226 -10.31850 -10.28953 -10.08766 -9.87664 -9.74952 -9.61909 -9.47304 -9.45643 -8.59153 -8.42533 -6.72589 -5.97694 -3.40045 1.11194 1.71697 2.40317 2.62886 3.05084 3.33085 3.47622 3.53395 3.85623 4.03453 4.41881 4.55050 4.66836 4.72913 4.91617 4.92670 4.97983 5.01038 5.13668 5.18479 5.22974 5.23979 5.31690 5.35190 5.41620 5.47610 5.48358 5.53919 5.64460 5.67293 5.80100 5.86913 5.92503 5.97819 6.00548 6.14354 6.23566 6.33398 6.50135 6.59858 6.72138 6.77924 6.83804 6.92782 6.95107 7.10413 7.44534 8.01593 8.11816 8.17438 8.40903 9.04738 9.74327 10.18844 11.17851 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.003333 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.352294 B = 8399.706245 C = 8671.312709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.594 3.406 5 O -0.507 6.507 6 C -0.238 4.238 7 C 0.052 3.948 8 C -0.078 4.078 9 N -0.357 5.357 10 O 0.094 5.906 11 C 0.012 3.988 12 C -0.082 4.082 13 C 0.158 3.842 14 H 0.092 0.908 15 C -0.107 4.107 16 C -0.140 4.140 17 C 0.148 3.852 18 N -0.599 5.599 19 C -0.265 4.265 20 H 0.075 0.925 21 C 0.040 3.960 22 N -0.897 5.897 23 Si 0.876 3.124 24 H -0.286 1.286 25 H -0.302 1.302 26 H -0.270 1.270 27 C 0.141 3.859 28 C -0.140 4.140 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.026 0.974 46 H 0.263 0.737 47 H 0.069 0.931 48 H 0.028 0.972 49 H 0.080 0.920 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 -16.712 14.772 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.379 3.621 5 O -0.381 6.381 6 C -0.246 4.246 7 C -0.110 4.110 8 C -0.135 4.135 9 N -0.064 5.064 10 O 0.032 5.968 11 C -0.051 4.051 12 C -0.139 4.139 13 C 0.056 3.944 14 H 0.110 0.890 15 C -0.145 4.145 16 C -0.181 4.181 17 C 0.020 3.980 18 N -0.322 5.322 19 C -0.394 4.394 20 H 0.092 0.908 21 C -0.161 4.161 22 N -0.537 5.537 23 Si 0.706 3.294 24 H -0.214 1.214 25 H -0.230 1.230 26 H -0.195 1.195 27 C 0.016 3.984 28 C -0.179 4.179 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.046 0.954 49 H 0.099 0.901 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.271 -16.684 15.693 24.031 hybrid contribution -0.396 -0.155 -1.467 1.528 sum -7.667 -16.840 14.225 23.339 Atomic orbital electron populations 1.22364 0.95898 1.02284 1.03001 1.21531 0.94628 0.82618 1.02936 1.48272 1.65023 1.13923 1.05727 1.16886 0.78007 0.85381 0.81786 1.90874 1.43892 1.16694 1.86678 1.22030 0.94356 1.07503 1.00682 1.24752 0.98788 0.96708 0.90741 1.20226 0.86982 1.03032 1.03263 1.73603 0.91776 1.19766 1.21276 1.84514 1.23807 1.49795 1.38668 1.24541 0.97683 0.95327 0.87584 1.20576 0.89248 1.00393 1.03730 1.20519 0.96857 0.94210 0.82784 0.89032 1.21707 0.98884 0.97312 0.96638 1.22806 0.98096 1.01661 0.95551 1.20683 0.85374 0.96127 0.95798 1.44169 1.05387 1.15475 1.67142 1.18713 1.29954 0.92490 0.98247 0.90759 1.25529 0.97991 0.95251 0.97327 1.69902 1.49776 1.10181 1.23889 0.86912 0.77453 0.82374 0.82627 1.21432 1.23000 1.19508 1.20396 0.95532 0.92222 0.90217 1.21312 0.94137 1.02479 1.00002 0.91611 0.92284 0.91634 0.89969 0.91011 0.89510 0.90000 0.89798 0.88581 0.89074 0.88545 0.93988 0.90067 0.91881 0.93524 0.93971 0.95607 0.92759 0.91207 0.95361 0.90115 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.11 1.00 5.92 -4.04 -0.02 0.97 16 3 N -0.60 -7.61 2.31 -169.29 -0.39 -8.00 16 4 C 0.59 8.56 6.77 -12.53 -0.08 8.48 16 5 O -0.51 -9.39 14.38 5.27 0.08 -9.31 16 6 C -0.24 -2.94 4.43 -102.90 -0.46 -3.40 16 7 C 0.05 0.62 7.36 -79.77 -0.59 0.03 16 8 C -0.08 -0.73 10.49 36.01 0.38 -0.35 16 9 N -0.36 -4.39 12.01 34.78 0.42 -3.97 16 10 O 0.09 1.05 11.06 18.65 0.21 1.26 16 11 C 0.01 0.12 7.11 -34.63 -0.25 -0.12 16 12 C -0.08 -0.59 9.68 36.01 0.35 -0.25 16 13 C 0.16 2.40 2.37 -69.60 -0.17 2.24 16 14 H 0.09 1.33 6.01 -51.93 -0.31 1.02 16 15 C -0.11 -1.87 4.09 -27.19 -0.11 -1.98 16 16 C -0.14 -2.59 6.41 -24.76 -0.16 -2.74 16 17 C 0.15 3.11 4.22 -4.66 -0.02 3.09 16 18 N -0.60 -13.85 2.14 -175.08 -0.37 -14.22 16 19 C -0.27 -7.36 9.92 -15.06 -0.15 -7.51 16 20 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 21 C 0.04 1.14 5.28 -17.43 -0.09 1.05 16 22 N -0.90 -27.32 13.97 55.49 0.78 -26.54 16 23 Si 0.88 22.02 25.26 -169.99 -4.29 17.72 16 24 H -0.29 -7.01 6.73 56.52 0.38 -6.63 16 25 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.14 2.70 6.11 -5.21 -0.03 2.67 16 28 C -0.14 -2.41 3.97 -30.19 -0.12 -2.53 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.46 4.67 -51.93 -0.24 0.22 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 33 H 0.07 0.65 6.70 -51.93 -0.35 0.30 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.53 6.13 -51.93 -0.32 0.21 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.81 8.11 -51.93 -0.42 0.39 16 40 H 0.04 0.68 7.77 -51.93 -0.40 0.27 16 41 H 0.08 1.72 6.35 -51.93 -0.33 1.39 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.99 3.40 -51.93 -0.18 0.82 16 45 H 0.03 0.48 6.88 -51.93 -0.36 0.12 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 47 H 0.07 1.37 7.99 -51.93 -0.42 0.95 16 48 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 49 H 0.08 1.66 6.11 -51.93 -0.32 1.35 16 50 H 0.04 0.67 8.02 -51.93 -0.42 0.25 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -33.06 382.17 -6.82 -39.88 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.85 Total: -1.19 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.14 Total: -1.38 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.43 Total: -52.74 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.28 Total: -8.05 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.29 Total: 17.72 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.06 -6.82 -39.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997916837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.704 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds