Wall clock time and date at job start Tue Mar 31 2020 19:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46935 * 2 1 4 4 C 1.34777 * 120.00311 * 90.00294 * 3 2 1 5 5 O 1.21605 * 120.00310 * 180.02562 * 4 3 2 6 6 C 1.47396 * 119.99635 * 359.97438 * 4 3 2 7 7 C 1.47100 * 128.56487 * 89.67850 * 6 4 3 8 8 C 1.50703 * 127.33478 * 0.24049 * 7 6 4 9 9 N 1.30015 * 105.33119 * 180.26014 * 7 6 4 10 10 O 1.20663 * 112.29996 * 359.97438 * 9 7 6 11 11 C 1.33491 * 113.15613 * 0.02562 * 10 9 7 12 12 C 1.50703 * 126.82571 * 179.97438 * 11 10 9 13 13 C 1.46507 * 119.99947 * 269.99585 * 3 2 1 14 14 H 1.09001 * 110.21104 * 1.94000 * 13 3 2 15 15 C 1.50130 * 110.24783 * 124.02022 * 13 3 2 16 16 C 1.54840 * 110.81591 * 216.66077 * 15 13 3 17 17 C 1.54904 * 110.13908 * 321.13030 * 16 15 13 18 18 N 1.43433 * 116.08431 * 318.64599 * 17 16 15 19 19 C 1.36933 * 120.53577 * 271.54895 * 18 17 16 20 20 H 1.07998 * 120.00678 * 140.23890 * 19 18 17 21 21 C 1.38821 * 119.99811 * 320.23556 * 19 18 17 22 22 N 1.31612 * 119.99949 * 156.32270 * 21 19 18 23 23 Si 1.86802 * 119.99951 * 336.32181 * 21 19 18 24 24 H 1.48498 * 109.46922 * 95.57291 * 23 21 19 25 25 H 1.48490 * 109.47098 * 215.57272 * 23 21 19 26 26 H 1.48504 * 109.47100 * 335.57436 * 23 21 19 27 27 C 1.50166 * 118.92607 * 91.56116 * 18 17 16 28 28 C 1.46233 * 107.53453 * 289.59151 * 27 18 17 29 29 H 1.09003 * 109.46597 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46796 * 300.00350 * 1 2 3 31 31 H 1.09005 * 109.46719 * 60.00324 * 1 2 3 32 32 H 1.08997 * 109.47268 * 240.00242 * 2 1 3 33 33 H 1.09000 * 109.47168 * 119.99666 * 2 1 3 34 34 H 1.08998 * 109.47393 * 90.00164 * 8 7 6 35 35 H 1.09004 * 109.47046 * 210.00107 * 8 7 6 36 36 H 1.08999 * 109.47011 * 329.99902 * 8 7 6 37 37 H 1.08998 * 109.46595 * 270.01318 * 12 11 10 38 38 H 1.08990 * 109.47184 * 30.01808 * 12 11 10 39 39 H 1.09003 * 109.46559 * 150.02023 * 12 11 10 40 40 H 1.08999 * 109.20658 * 337.00350 * 15 13 3 41 41 H 1.08997 * 109.20806 * 96.31321 * 15 13 3 42 42 H 1.08998 * 109.36212 * 200.93018 * 16 15 13 43 43 H 1.09001 * 109.36091 * 81.33533 * 16 15 13 44 44 H 1.09002 * 108.16007 * 196.92401 * 17 16 15 45 45 H 1.09007 * 107.99696 * 80.23881 * 17 16 15 46 46 H 0.97006 * 120.00246 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.84575 * 170.08472 * 27 18 17 48 48 H 1.08995 * 109.84540 * 49.10357 * 27 18 17 49 49 H 1.08995 * 108.52511 * 297.16840 * 28 27 18 50 50 H 1.09002 * 108.39881 * 179.56257 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0167 1.1672 5 8 2.6479 3.1633 1.1672 6 6 1.9969 1.3220 2.4436 7 6 2.9262 0.5007 3.2348 8 6 4.3644 0.1835 2.9155 9 7 2.2423 0.1065 4.2679 10 8 1.1094 0.5215 4.2526 11 6 0.8415 1.2770 3.1852 12 6 -0.4683 1.9471 2.8586 13 6 2.2626 2.0719 -1.2688 14 1 1.9976 1.4262 -2.1061 15 6 1.4759 3.3494 -1.3248 16 6 0.9558 3.6128 -2.7592 17 6 2.0302 3.2077 -3.7990 18 7 3.3828 3.5617 -3.4788 19 6 3.8881 4.7807 -3.8447 20 1 4.5342 5.3221 -3.1697 21 6 3.5699 5.3205 -5.0834 22 7 3.6370 6.6214 -5.2712 23 14 3.0464 4.2004 -6.4837 24 1 1.5638 4.1376 -6.5395 25 1 3.5678 4.7355 -7.7670 26 1 3.5914 2.8376 -6.2577 27 6 4.2358 2.5739 -2.7362 28 6 3.7254 2.4919 -1.3682 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0104 0.9433 3.3553 35 1 4.6208 -0.7932 3.3260 36 1 4.5023 0.1708 1.8343 37 1 -1.0830 1.2721 2.2631 38 1 -0.9904 2.1942 3.7828 39 1 -0.2784 2.8596 2.2933 40 1 0.6282 3.2787 -0.6433 41 1 2.1144 4.1774 -1.0171 42 1 0.7259 4.6723 -2.8714 43 1 0.0510 3.0290 -2.9284 44 1 1.7737 3.6722 -4.7511 45 1 1.9834 2.1262 -3.9277 46 1 3.4143 6.9987 -6.1367 47 1 5.2713 2.9139 -2.7250 48 1 4.1716 1.5965 -3.2143 49 1 3.8381 3.4684 -0.8975 50 1 4.3307 1.7715 -0.8178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997916837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:59 Heat of formation + Delta-G solvation = 38.634014 kcal Electronic energy + Delta-G solvation = -31389.112583 eV Core-core repulsion = 27420.167240 eV Total energy + Delta-G solvation = -3968.945343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.93954 -41.55144 -39.22126 -37.00728 -35.76197 -35.02975 -34.37097 -33.43058 -32.97581 -30.98618 -29.80037 -29.08560 -27.90894 -26.44533 -25.14705 -24.99086 -23.89944 -22.17546 -21.44528 -21.24042 -20.09537 -18.88915 -18.44322 -18.38712 -17.82434 -17.24248 -16.83004 -16.31519 -16.02172 -15.59736 -15.51329 -15.14072 -15.05667 -14.75436 -14.61440 -14.41231 -14.31515 -14.25881 -14.00865 -13.83448 -13.78433 -13.59388 -13.43137 -13.34369 -13.20392 -12.87930 -12.58750 -12.38743 -12.28733 -12.13806 -11.99492 -11.89296 -11.75713 -11.64971 -11.36612 -11.17885 -11.00120 -10.86287 -10.53046 -10.37314 -9.71712 -8.65463 -8.17965 -5.57735 0.27518 0.82562 1.32807 1.34349 1.44198 1.56720 1.71873 2.11396 2.45821 3.01721 3.05123 3.23156 3.35034 3.49782 3.86303 3.88272 4.01148 4.05086 4.18279 4.21623 4.35226 4.39358 4.41551 4.44060 4.47063 4.51708 4.52370 4.59439 4.61381 4.70021 4.73536 4.76757 4.82521 4.93768 4.97522 5.02513 5.05210 5.06696 5.10252 5.12318 5.26970 5.37926 5.41676 5.48908 5.56832 5.67462 5.98785 6.19853 6.37206 7.05222 7.08900 7.16373 7.66882 8.12151 9.02379 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.003333 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.352294 B = 8399.706245 C = 8671.312709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 N -0.588 5.588 4 C 0.599 3.401 5 O -0.560 6.560 6 C -0.264 4.264 7 C 0.050 3.950 8 C -0.078 4.078 9 N -0.373 5.373 10 O 0.094 5.906 11 C 0.030 3.970 12 C -0.084 4.084 13 C 0.169 3.831 14 H 0.117 0.883 15 C -0.094 4.094 16 C -0.134 4.134 17 C 0.138 3.862 18 N -0.611 5.611 19 C -0.257 4.257 20 H 0.023 0.977 21 C -0.019 4.019 22 N -0.951 5.951 23 Si 0.951 3.049 24 H -0.273 1.273 25 H -0.310 1.310 26 H -0.252 1.252 27 C 0.142 3.858 28 C -0.128 4.128 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.089 0.911 44 H 0.020 0.980 45 H 0.066 0.934 46 H 0.262 0.738 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 -21.089 14.701 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.021 4.021 3 N -0.319 5.319 4 C 0.385 3.615 5 O -0.438 6.438 6 C -0.272 4.272 7 C -0.113 4.113 8 C -0.136 4.136 9 N -0.081 5.081 10 O 0.034 5.966 11 C -0.033 4.033 12 C -0.140 4.140 13 C 0.067 3.933 14 H 0.135 0.865 15 C -0.133 4.133 16 C -0.175 4.175 17 C 0.011 3.989 18 N -0.335 5.335 19 C -0.387 4.387 20 H 0.041 0.959 21 C -0.215 4.215 22 N -0.594 5.594 23 Si 0.778 3.222 24 H -0.200 1.200 25 H -0.239 1.239 26 H -0.176 1.176 27 C 0.019 3.981 28 C -0.168 4.168 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.107 0.893 44 H 0.038 0.962 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.054 0.946 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.467 -21.144 15.649 27.957 hybrid contribution 0.281 1.239 -1.283 1.806 sum -9.186 -19.905 14.366 26.210 Atomic orbital electron populations 1.22352 0.94456 1.03701 1.02804 1.21837 0.95810 0.80278 1.04210 1.48259 1.64270 1.15120 1.04286 1.17127 0.76911 0.84668 0.82778 1.90872 1.46329 1.19115 1.87481 1.21855 0.95667 1.09054 1.00586 1.25089 0.99561 0.96231 0.90370 1.20321 0.85741 1.03978 1.03536 1.73596 0.92219 1.20668 1.21625 1.84503 1.23537 1.49876 1.38729 1.25035 0.98183 0.93767 0.86350 1.20770 0.88129 0.99995 1.05150 1.20300 0.94546 0.93756 0.84743 0.86532 1.21514 0.98620 0.96962 0.96155 1.22745 0.99062 1.00365 0.95335 1.20855 0.84462 0.98237 0.95326 1.44273 1.07058 1.14696 1.67430 1.18505 1.28713 0.94106 0.97397 0.95886 1.26184 0.99044 0.96364 0.99913 1.70051 1.52608 1.12349 1.24427 0.85722 0.77745 0.80584 0.78123 1.19971 1.23913 1.17557 1.20513 0.94308 0.92530 0.90796 1.21105 0.96336 1.00753 0.98609 0.89389 0.92361 0.91982 0.88049 0.90433 0.89651 0.88177 0.89540 0.86110 0.86750 0.89869 0.92701 0.95036 0.95201 0.89288 0.96224 0.91557 0.92867 0.92763 0.91648 0.94567 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 10.24 71.98 0.74 -1.27 16 2 C 0.10 1.47 5.92 86.38 0.51 1.98 16 3 N -0.59 -13.58 2.31 -807.77 -1.87 -15.45 16 4 C 0.60 16.79 6.77 86.65 0.59 17.38 16 5 O -0.56 -21.47 14.38 -4.05 -0.06 -21.53 16 6 C -0.26 -6.17 4.43 -18.75 -0.08 -6.25 16 7 C 0.05 1.10 7.36 45.16 0.33 1.44 16 8 C -0.08 -1.36 10.49 71.24 0.75 -0.61 16 9 N -0.37 -8.57 12.01 -44.78 -0.54 -9.11 16 10 O 0.09 1.92 11.06 76.99 0.85 2.78 16 11 C 0.03 0.57 7.11 25.48 0.18 0.75 16 12 C -0.08 -0.99 9.68 71.24 0.69 -0.30 16 13 C 0.17 4.76 2.37 43.91 0.10 4.87 16 14 H 0.12 2.79 6.01 -2.39 -0.01 2.78 16 15 C -0.09 -3.23 4.09 30.30 0.12 -3.10 16 16 C -0.13 -4.75 6.41 31.87 0.20 -4.55 16 17 C 0.14 5.49 4.22 87.60 0.37 5.86 16 18 N -0.61 -28.14 2.14 -707.83 -1.51 -29.65 16 19 C -0.26 -14.89 9.92 84.04 0.83 -14.05 16 20 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 21 C -0.02 -1.10 5.28 84.87 0.45 -0.65 16 22 N -0.95 -60.60 13.97 21.65 0.30 -60.30 16 23 Si 0.95 45.74 25.26 68.60 1.73 47.47 16 24 H -0.27 -12.43 6.73 99.48 0.67 -11.76 16 25 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 26 H -0.25 -11.26 7.11 99.48 0.71 -10.55 16 27 C 0.14 5.28 6.11 83.58 0.51 5.79 16 28 C -0.13 -4.37 3.97 28.35 0.11 -4.26 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.67 4.67 -2.39 -0.01 0.66 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.10 1.16 7.95 -2.39 -0.02 1.14 16 33 H 0.08 1.11 6.70 -2.39 -0.02 1.09 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 0.87 6.13 -2.39 -0.01 0.86 16 38 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.28 8.11 -2.39 -0.02 1.26 16 40 H 0.05 1.71 7.77 -2.39 -0.02 1.69 16 41 H 0.03 1.40 6.35 -2.39 -0.02 1.38 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.02 0.88 3.40 -2.39 -0.01 0.87 16 45 H 0.07 2.12 6.88 -2.38 -0.02 2.11 16 46 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 47 H 0.05 2.16 7.99 -2.38 -0.02 2.14 16 48 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 49 H 0.04 1.57 6.11 -2.39 -0.01 1.55 16 50 H 0.06 1.86 8.02 -2.39 -0.02 1.84 16 Total: -1.00 -77.90 382.17 6.23 -71.67 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.91 Total: 11.11 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.41 Total: 3.01 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -3.61 Total: -114.50 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.79 Total: -18.75 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.73 Total: 47.47 kcal Total: -77.90 6.23 -71.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997916837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.300 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds