Wall clock time and date at job start Tue Mar 31 2020 19:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46760 * 2 1 4 4 C 1.34778 * 119.99764 * 269.99333 * 3 2 1 5 5 O 1.21605 * 119.99881 * 179.97438 * 4 3 2 6 6 C 1.47399 * 119.99988 * 0.02562 * 4 3 2 7 7 C 1.47100 * 128.56605 * 89.67398 * 6 4 3 8 8 C 1.50701 * 127.33531 * 0.02562 * 7 6 4 9 9 N 1.30013 * 105.32867 * 179.89229 * 7 6 4 10 10 O 1.20654 * 112.29975 * 0.39171 * 9 7 6 11 11 C 1.33487 * 113.15787 * 359.73381 * 10 9 7 12 12 C 1.50702 * 126.82958 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00171 * 89.99958 * 3 2 1 14 14 H 1.09003 * 108.44346 * 2.30933 * 13 3 2 15 15 C 1.52562 * 108.39031 * 244.68561 * 13 3 2 16 16 C 1.50888 * 109.36082 * 153.82141 * 15 13 3 17 17 C 1.53944 * 110.09428 * 91.88542 * 16 15 13 18 18 N 1.47580 * 112.12094 * 319.44868 * 17 16 15 19 19 C 1.36947 * 118.62192 * 137.87406 * 18 17 16 20 20 H 1.08001 * 119.99697 * 207.04877 * 19 18 17 21 21 C 1.38809 * 120.00133 * 27.05303 * 19 18 17 22 22 N 1.31625 * 119.99735 * 16.60275 * 21 19 18 23 23 Si 1.86794 * 119.99967 * 196.60224 * 21 19 18 24 24 H 1.48504 * 109.47023 * 94.74308 * 23 21 19 25 25 H 1.48508 * 109.46968 * 214.73843 * 23 21 19 26 26 H 1.48503 * 109.47303 * 334.73992 * 23 21 19 27 27 C 1.44574 * 122.73487 * 317.82655 * 18 17 16 28 28 C 1.47089 * 108.51294 * 119.99637 * 13 3 2 29 29 H 1.09005 * 109.46752 * 60.00169 * 1 2 3 30 30 H 1.09002 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47150 * 300.00291 * 1 2 3 32 32 H 1.09003 * 109.47420 * 240.00134 * 2 1 3 33 33 H 1.08991 * 109.46923 * 119.99757 * 2 1 3 34 34 H 1.08999 * 109.47174 * 90.00316 * 8 7 6 35 35 H 1.09004 * 109.47073 * 210.00200 * 8 7 6 36 36 H 1.09000 * 109.47205 * 329.99780 * 8 7 6 37 37 H 1.09011 * 109.47066 * 270.00313 * 12 11 10 38 38 H 1.08998 * 109.47085 * 29.99627 * 12 11 10 39 39 H 1.09000 * 109.47215 * 150.00260 * 12 11 10 40 40 H 1.08994 * 109.49149 * 273.78765 * 15 13 3 41 41 H 1.09004 * 109.49070 * 33.86073 * 15 13 3 42 42 H 1.09000 * 109.36521 * 212.07611 * 16 15 13 43 43 H 1.08998 * 109.36209 * 331.69295 * 16 15 13 44 44 H 1.08996 * 108.94714 * 80.12102 * 17 16 15 45 45 H 1.09004 * 108.94813 * 198.75420 * 17 16 15 46 46 H 0.97001 * 119.99529 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.44724 * 330.73303 * 27 18 17 48 48 H 1.09001 * 109.44789 * 210.78902 * 27 18 17 49 49 H 1.08999 * 109.32910 * 63.63828 * 28 13 3 50 50 H 1.09002 * 109.18795 * 304.07021 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.6478 3.1633 -1.1673 6 6 1.9970 1.3218 -2.4437 7 6 0.7578 1.2679 -3.2345 8 6 -0.5610 1.9223 -2.9125 9 7 1.0434 0.5380 -4.2718 10 8 2.1842 0.1453 -4.2551 11 6 2.8666 0.5600 -3.1854 12 6 4.3049 0.2530 -2.8566 13 6 2.2624 2.0720 1.2687 14 1 2.0610 1.3770 2.0840 15 6 1.2874 3.2405 1.3760 16 6 1.0465 3.5589 2.8311 17 6 2.0410 4.6323 3.3093 18 7 3.3965 4.4148 2.7677 19 6 4.1050 5.4973 2.3186 20 1 4.8568 5.3709 1.5536 21 6 3.8569 6.7568 2.8466 22 7 3.1990 6.8772 3.9803 23 14 4.4568 8.2808 1.9484 24 1 3.3673 8.8098 1.0890 25 1 4.8529 9.3149 2.9380 26 1 5.6269 7.9295 1.1043 27 6 4.0077 3.1068 2.6925 28 6 3.6804 2.4589 1.3245 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 -0.5875 2.9207 -3.3491 35 1 -1.3737 1.3239 -3.3246 36 1 -0.6759 1.9954 -1.8311 37 1 4.3549 -0.6599 -2.2629 38 1 4.8676 0.1169 -3.7801 39 1 4.7323 1.0795 -2.2890 40 1 1.7095 4.1132 0.8778 41 1 0.3436 2.9714 0.9016 42 1 0.0285 3.9277 2.9566 43 1 1.1772 2.6546 3.4254 44 1 1.6852 5.6118 2.9898 45 1 2.0871 4.6121 4.3981 46 1 3.0260 7.7574 4.3495 47 1 3.6196 2.4782 3.4939 48 1 5.0881 3.2044 2.7987 49 1 3.8913 3.1722 0.5278 50 1 4.2994 1.5721 1.1880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997916838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:04 Heat of formation + Delta-G solvation = 51.412514 kcal Electronic energy + Delta-G solvation = -31505.650107 eV Core-core repulsion = 27537.258881 eV Total energy + Delta-G solvation = -3968.391226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.98619 -40.25574 -37.40191 -35.75631 -34.72881 -33.79965 -33.03203 -31.69697 -30.90018 -29.65820 -28.83981 -28.09278 -26.06495 -24.97183 -23.83685 -23.37770 -22.76292 -20.73310 -20.29791 -19.18436 -19.07295 -17.93061 -17.30323 -16.69636 -16.38494 -15.92520 -15.00374 -14.97864 -14.38749 -14.24827 -14.04098 -13.88594 -13.64641 -13.61871 -13.43832 -13.32948 -13.24426 -12.94735 -12.86121 -12.71758 -12.52834 -12.35172 -12.03620 -11.90055 -11.35173 -11.26588 -11.14899 -11.07812 -10.76015 -10.71517 -10.42848 -10.29909 -10.06530 -10.02634 -9.71809 -9.65342 -9.56956 -9.50388 -9.30135 -8.50057 -8.30280 -6.56903 -5.69121 -3.11693 1.19028 1.80072 2.52642 2.73456 3.16135 3.45585 3.52440 3.55023 3.93349 4.11684 4.50932 4.59847 4.76395 4.80279 5.00214 5.07499 5.11422 5.19816 5.23632 5.27833 5.29344 5.40564 5.43003 5.49209 5.52554 5.56951 5.61870 5.66156 5.71699 5.78548 5.85874 6.05228 6.08027 6.09995 6.17260 6.37113 6.48256 6.56965 6.67045 6.82126 6.83812 6.91050 7.09485 7.19271 7.50265 7.58664 7.76380 7.93996 8.09162 8.31459 8.57344 9.33854 10.00511 10.44959 11.38431 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.003759 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.859493 B = 7447.185378 C = 7972.688599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.604 5.604 4 C 0.591 3.409 5 O -0.500 6.500 6 C -0.237 4.237 7 C 0.054 3.946 8 C -0.081 4.081 9 N -0.359 5.359 10 O 0.093 5.907 11 C 0.008 3.992 12 C -0.078 4.078 13 C 0.175 3.825 14 H 0.069 0.931 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.179 3.821 18 N -0.587 5.587 19 C -0.250 4.250 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.906 5.906 23 Si 0.898 3.102 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.166 3.834 28 C -0.169 4.169 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.251 0.749 47 H 0.030 0.970 48 H 0.048 0.952 49 H 0.089 0.911 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 -18.114 -10.033 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.016 4.016 3 N -0.337 5.337 4 C 0.376 3.624 5 O -0.373 6.373 6 C -0.244 4.244 7 C -0.108 4.108 8 C -0.138 4.138 9 N -0.066 5.066 10 O 0.031 5.969 11 C -0.055 4.055 12 C -0.136 4.136 13 C 0.074 3.926 14 H 0.087 0.913 15 C -0.150 4.150 16 C -0.180 4.180 17 C 0.054 3.946 18 N -0.308 5.308 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.728 3.272 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.204 1.204 27 C 0.037 3.963 28 C -0.210 4.210 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.067 0.933 49 H 0.108 0.892 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.448 -17.755 -10.956 21.563 hybrid contribution 0.317 1.046 0.138 1.102 sum -5.131 -16.709 -10.818 20.556 Atomic orbital electron populations 1.22350 0.96040 1.02116 1.03015 1.21500 0.94585 0.82939 1.02586 1.48469 1.65238 1.13832 1.06187 1.16907 0.78244 0.85482 0.81764 1.90901 1.43604 1.16336 1.86502 1.22103 0.94405 1.07066 1.00809 1.24691 0.97091 0.98336 0.90655 1.20318 0.89706 1.00497 1.03305 1.73588 0.96161 1.15594 1.21245 1.84502 1.16966 1.56784 1.38603 1.24588 0.96946 0.96393 0.87614 1.20463 0.85300 1.04163 1.03626 1.20139 0.96712 0.93624 0.82108 0.91253 1.21313 0.96671 0.99420 0.97640 1.22003 1.00144 1.00496 0.95320 1.20976 0.82362 0.95705 0.95553 1.43603 1.12307 1.01893 1.72959 1.19206 1.17614 0.86398 1.14740 0.91825 1.24979 1.00423 0.98299 0.95661 1.70082 1.45292 1.22206 1.17468 0.86339 0.78539 0.83321 0.79004 1.21580 1.21961 1.20414 1.20533 0.96604 0.87254 0.91923 1.22028 0.93944 1.00738 1.04269 0.92155 0.91830 0.91758 0.91272 0.90203 0.89513 0.90031 0.89539 0.88907 0.89200 0.88517 0.89187 0.93955 0.92861 0.93829 0.91014 0.95801 0.93878 0.95218 0.93345 0.89241 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 10.24 37.16 0.38 -1.24 16 2 C 0.11 1.07 5.91 -4.04 -0.02 1.05 16 3 N -0.60 -8.22 2.25 -170.90 -0.38 -8.61 16 4 C 0.59 9.25 6.85 -12.53 -0.09 9.17 16 5 O -0.50 -10.16 13.97 5.27 0.07 -10.08 16 6 C -0.24 -3.16 4.47 -102.90 -0.46 -3.62 16 7 C 0.05 0.69 7.12 -79.77 -0.57 0.12 16 8 C -0.08 -0.84 9.85 36.01 0.35 -0.49 16 9 N -0.36 -4.70 12.01 34.78 0.42 -4.28 16 10 O 0.09 1.12 11.06 18.67 0.21 1.33 16 11 C 0.01 0.09 7.25 -34.63 -0.25 -0.16 16 12 C -0.08 -0.62 10.33 36.01 0.37 -0.25 16 13 C 0.17 2.78 1.95 -70.99 -0.14 2.64 16 14 H 0.07 1.00 6.93 -51.93 -0.36 0.64 16 15 C -0.11 -2.03 4.31 -28.02 -0.12 -2.15 16 16 C -0.14 -2.59 5.71 -27.30 -0.16 -2.75 16 17 C 0.18 4.24 4.67 -2.96 -0.01 4.23 16 18 N -0.59 -14.47 2.26 -172.11 -0.39 -14.86 16 19 C -0.25 -6.93 9.43 -15.06 -0.14 -7.07 16 20 H 0.06 1.79 7.88 -52.49 -0.41 1.38 16 21 C 0.00 0.13 4.84 -17.43 -0.08 0.04 16 22 N -0.91 -26.44 11.11 55.49 0.62 -25.83 16 23 Si 0.90 22.50 29.58 -169.99 -5.03 17.47 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.17 3.41 5.66 -4.09 -0.02 3.39 16 28 C -0.17 -3.03 4.84 -28.59 -0.14 -3.17 16 29 H 0.06 0.59 4.87 -51.93 -0.25 0.33 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.64 6.65 -51.93 -0.35 0.30 16 33 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.89 6.31 -51.93 -0.33 0.56 16 37 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 40 H 0.09 2.04 6.72 -51.93 -0.35 1.69 16 41 H 0.04 0.70 8.04 -51.93 -0.42 0.28 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.73 7.32 -51.93 -0.38 0.35 16 44 H 0.07 1.93 6.40 -51.93 -0.33 1.60 16 45 H 0.02 0.61 8.03 -51.93 -0.42 0.19 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 48 H 0.05 1.02 7.99 -51.93 -0.41 0.60 16 49 H 0.09 1.93 6.04 -51.93 -0.31 1.62 16 50 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -32.55 387.66 -7.83 -40.39 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.09 Total: -1.11 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.10 Total: -0.26 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.26 Total: -53.58 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.28 Total: -8.75 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.55 -7.83 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997916838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.800 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds