Wall clock time and date at job start Tue Mar 31 2020 19:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46760 * 2 1 4 4 C 1.34778 * 119.99764 * 269.99333 * 3 2 1 5 5 O 1.21605 * 119.99881 * 179.97438 * 4 3 2 6 6 C 1.47399 * 119.99988 * 0.02562 * 4 3 2 7 7 C 1.47100 * 128.56605 * 89.67398 * 6 4 3 8 8 C 1.50701 * 127.33531 * 0.02562 * 7 6 4 9 9 N 1.30013 * 105.32867 * 179.89229 * 7 6 4 10 10 O 1.20654 * 112.29975 * 0.39171 * 9 7 6 11 11 C 1.33487 * 113.15787 * 359.73381 * 10 9 7 12 12 C 1.50702 * 126.82958 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00171 * 89.99958 * 3 2 1 14 14 H 1.09003 * 108.44346 * 2.30933 * 13 3 2 15 15 C 1.52562 * 108.39031 * 244.68561 * 13 3 2 16 16 C 1.50888 * 109.36082 * 153.82141 * 15 13 3 17 17 C 1.53944 * 110.09428 * 91.88542 * 16 15 13 18 18 N 1.47580 * 112.12094 * 319.44868 * 17 16 15 19 19 C 1.36947 * 118.62192 * 137.87406 * 18 17 16 20 20 H 1.08001 * 119.99697 * 207.04877 * 19 18 17 21 21 C 1.38809 * 120.00133 * 27.05303 * 19 18 17 22 22 N 1.31625 * 119.99735 * 16.60275 * 21 19 18 23 23 Si 1.86794 * 119.99967 * 196.60224 * 21 19 18 24 24 H 1.48504 * 109.47023 * 94.74308 * 23 21 19 25 25 H 1.48508 * 109.46968 * 214.73843 * 23 21 19 26 26 H 1.48503 * 109.47303 * 334.73992 * 23 21 19 27 27 C 1.44574 * 122.73487 * 317.82655 * 18 17 16 28 28 C 1.47089 * 108.51294 * 119.99637 * 13 3 2 29 29 H 1.09005 * 109.46752 * 60.00169 * 1 2 3 30 30 H 1.09002 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47150 * 300.00291 * 1 2 3 32 32 H 1.09003 * 109.47420 * 240.00134 * 2 1 3 33 33 H 1.08991 * 109.46923 * 119.99757 * 2 1 3 34 34 H 1.08999 * 109.47174 * 90.00316 * 8 7 6 35 35 H 1.09004 * 109.47073 * 210.00200 * 8 7 6 36 36 H 1.09000 * 109.47205 * 329.99780 * 8 7 6 37 37 H 1.09011 * 109.47066 * 270.00313 * 12 11 10 38 38 H 1.08998 * 109.47085 * 29.99627 * 12 11 10 39 39 H 1.09000 * 109.47215 * 150.00260 * 12 11 10 40 40 H 1.08994 * 109.49149 * 273.78765 * 15 13 3 41 41 H 1.09004 * 109.49070 * 33.86073 * 15 13 3 42 42 H 1.09000 * 109.36521 * 212.07611 * 16 15 13 43 43 H 1.08998 * 109.36209 * 331.69295 * 16 15 13 44 44 H 1.08996 * 108.94714 * 80.12102 * 17 16 15 45 45 H 1.09004 * 108.94813 * 198.75420 * 17 16 15 46 46 H 0.97001 * 119.99529 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.44724 * 330.73303 * 27 18 17 48 48 H 1.09001 * 109.44789 * 210.78902 * 27 18 17 49 49 H 1.08999 * 109.32910 * 63.63828 * 28 13 3 50 50 H 1.09002 * 109.18795 * 304.07021 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.6478 3.1633 -1.1673 6 6 1.9970 1.3218 -2.4437 7 6 0.7578 1.2679 -3.2345 8 6 -0.5610 1.9223 -2.9125 9 7 1.0434 0.5380 -4.2718 10 8 2.1842 0.1453 -4.2551 11 6 2.8666 0.5600 -3.1854 12 6 4.3049 0.2530 -2.8566 13 6 2.2624 2.0720 1.2687 14 1 2.0610 1.3770 2.0840 15 6 1.2874 3.2405 1.3760 16 6 1.0465 3.5589 2.8311 17 6 2.0410 4.6323 3.3093 18 7 3.3965 4.4148 2.7677 19 6 4.1050 5.4973 2.3186 20 1 4.8568 5.3709 1.5536 21 6 3.8569 6.7568 2.8466 22 7 3.1990 6.8772 3.9803 23 14 4.4568 8.2808 1.9484 24 1 3.3673 8.8098 1.0890 25 1 4.8529 9.3149 2.9380 26 1 5.6269 7.9295 1.1043 27 6 4.0077 3.1068 2.6925 28 6 3.6804 2.4589 1.3245 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 -0.5875 2.9207 -3.3491 35 1 -1.3737 1.3239 -3.3246 36 1 -0.6759 1.9954 -1.8311 37 1 4.3549 -0.6599 -2.2629 38 1 4.8676 0.1169 -3.7801 39 1 4.7323 1.0795 -2.2890 40 1 1.7095 4.1132 0.8778 41 1 0.3436 2.9714 0.9016 42 1 0.0285 3.9277 2.9566 43 1 1.1772 2.6546 3.4254 44 1 1.6852 5.6118 2.9898 45 1 2.0871 4.6121 4.3981 46 1 3.0260 7.7574 4.3495 47 1 3.6196 2.4782 3.4939 48 1 5.0881 3.2044 2.7987 49 1 3.8913 3.1722 0.5278 50 1 4.2994 1.5721 1.1880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997916838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:03 Heat of formation + Delta-G solvation = 32.958120 kcal Electronic energy + Delta-G solvation = -31506.450349 eV Core-core repulsion = 27537.258881 eV Total energy + Delta-G solvation = -3969.191468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.93208 -41.49509 -38.97054 -37.04128 -35.79640 -34.91849 -34.36932 -33.30346 -32.53691 -30.79950 -29.74531 -28.97062 -27.83478 -26.26109 -25.41892 -24.77713 -23.84507 -21.98723 -21.33801 -20.96589 -20.19202 -18.90763 -18.59672 -18.25216 -17.40812 -17.34618 -16.84346 -16.05978 -15.77918 -15.66874 -15.32577 -15.10609 -15.06931 -14.82783 -14.36838 -14.30237 -14.25331 -14.06497 -13.95619 -13.77000 -13.60805 -13.55192 -13.41752 -13.14150 -12.91996 -12.77138 -12.68212 -12.35216 -12.21331 -12.12177 -12.00521 -11.97009 -11.76088 -11.53027 -11.32214 -11.26615 -10.97932 -10.73915 -10.43335 -10.34925 -9.68175 -8.60104 -7.83899 -5.27704 0.28556 0.83747 1.38583 1.40960 1.44331 1.52249 1.76604 2.15329 2.51694 3.02217 3.24681 3.29104 3.52118 3.74216 3.91105 3.93342 4.02831 4.14445 4.20586 4.33717 4.39035 4.45826 4.48267 4.50748 4.51212 4.55282 4.58625 4.60702 4.66903 4.73970 4.79746 4.89946 4.92716 4.98135 5.03214 5.06550 5.08002 5.14488 5.19078 5.33472 5.38628 5.46111 5.54365 5.63852 5.72074 5.78047 5.84775 6.42603 6.45051 7.15771 7.17058 7.22347 8.01005 8.36552 9.20494 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.003759 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.859493 B = 7447.185378 C = 7972.688599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.596 3.404 5 O -0.558 6.558 6 C -0.265 4.265 7 C 0.052 3.948 8 C -0.082 4.082 9 N -0.374 5.374 10 O 0.094 5.906 11 C 0.026 3.974 12 C -0.079 4.079 13 C 0.176 3.824 14 H 0.102 0.898 15 C -0.101 4.101 16 C -0.126 4.126 17 C 0.189 3.811 18 N -0.600 5.600 19 C -0.253 4.253 20 H 0.052 0.948 21 C -0.044 4.044 22 N -0.931 5.931 23 Si 0.951 3.049 24 H -0.293 1.293 25 H -0.289 1.289 26 H -0.274 1.274 27 C 0.161 3.839 28 C -0.151 4.151 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.029 0.971 45 H 0.000 1.000 46 H 0.248 0.752 47 H 0.054 0.946 48 H 0.037 0.963 49 H 0.049 0.951 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -21.450 -10.550 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 N -0.326 5.326 4 C 0.382 3.618 5 O -0.436 6.436 6 C -0.272 4.272 7 C -0.110 4.110 8 C -0.139 4.139 9 N -0.082 5.082 10 O 0.034 5.966 11 C -0.037 4.037 12 C -0.136 4.136 13 C 0.075 3.925 14 H 0.120 0.880 15 C -0.140 4.140 16 C -0.165 4.165 17 C 0.063 3.937 18 N -0.322 5.322 19 C -0.384 4.384 20 H 0.069 0.931 21 C -0.239 4.239 22 N -0.578 5.578 23 Si 0.781 3.219 24 H -0.221 1.221 25 H -0.216 1.216 26 H -0.199 1.199 27 C 0.033 3.967 28 C -0.192 4.192 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.018 0.982 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.865 -21.169 -11.484 24.787 hybrid contribution 0.479 2.007 0.263 2.080 sum -5.386 -19.162 -11.222 22.850 Atomic orbital electron populations 1.22329 0.95206 1.03418 1.02349 1.21811 0.95253 0.80590 1.04289 1.48407 1.64319 1.15089 1.04739 1.17155 0.77064 0.84720 0.82851 1.90891 1.46346 1.18971 1.87386 1.21928 0.95621 1.08892 1.00754 1.24988 0.97634 0.98028 0.90303 1.20399 0.89507 1.00531 1.03427 1.73579 0.96736 1.16347 1.21530 1.84492 1.16793 1.56712 1.38627 1.25122 0.97682 0.94575 0.86331 1.20668 0.83176 1.04706 1.05053 1.19960 0.94704 0.93664 0.84195 0.88047 1.21148 0.97733 0.98436 0.96666 1.21838 0.99062 0.99784 0.95819 1.20744 0.83196 0.95734 0.93977 1.43779 1.12794 1.02708 1.72911 1.19357 1.17224 0.87849 1.13979 0.93065 1.25568 1.01411 1.00504 0.96465 1.70201 1.46726 1.22244 1.18594 0.85490 0.77967 0.80537 0.77951 1.22093 1.21566 1.19853 1.20715 0.95915 0.85876 0.94181 1.21757 0.96084 1.00546 1.00824 0.93080 0.89553 0.92188 0.90257 0.87784 0.89827 0.88047 0.89522 0.85988 0.86910 0.90050 0.94342 0.92285 0.91440 0.90854 0.95249 0.98225 0.94325 0.92811 0.94452 0.93201 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 10.24 71.98 0.74 -1.82 16 2 C 0.10 1.64 5.91 86.38 0.51 2.15 16 3 N -0.59 -14.81 2.25 -812.86 -1.83 -16.64 16 4 C 0.60 18.26 6.85 86.66 0.59 18.85 16 5 O -0.56 -23.44 13.97 -4.05 -0.06 -23.50 16 6 C -0.26 -6.76 4.47 -18.75 -0.08 -6.84 16 7 C 0.05 1.27 7.12 45.16 0.32 1.59 16 8 C -0.08 -1.61 9.85 71.24 0.70 -0.91 16 9 N -0.37 -9.23 12.01 -44.79 -0.54 -9.77 16 10 O 0.09 2.08 11.06 77.05 0.85 2.93 16 11 C 0.03 0.55 7.25 25.48 0.18 0.73 16 12 C -0.08 -1.04 10.33 71.24 0.74 -0.30 16 13 C 0.18 5.21 1.95 43.01 0.08 5.29 16 14 H 0.10 2.43 6.93 -2.39 -0.02 2.42 16 15 C -0.10 -3.59 4.31 29.76 0.13 -3.46 16 16 C -0.13 -4.50 5.71 30.23 0.17 -4.33 16 17 C 0.19 9.15 4.67 86.49 0.40 9.56 16 18 N -0.60 -30.30 2.26 -698.44 -1.58 -31.89 16 19 C -0.25 -14.58 9.43 84.03 0.79 -13.79 16 20 H 0.05 3.02 7.88 -2.91 -0.02 2.99 16 21 C -0.04 -2.58 4.84 84.86 0.41 -2.17 16 22 N -0.93 -56.36 11.11 21.65 0.24 -56.12 16 23 Si 0.95 47.84 29.58 68.60 2.03 49.87 16 24 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 27 C 0.16 6.51 5.66 87.37 0.49 7.00 16 28 C -0.15 -5.27 4.84 29.39 0.14 -5.13 16 29 H 0.05 0.85 4.87 -2.38 -0.01 0.84 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.16 6.65 -2.39 -0.02 1.14 16 33 H 0.10 1.23 7.87 -2.39 -0.02 1.21 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.09 1.69 6.31 -2.39 -0.02 1.68 16 37 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.40 8.11 -2.39 -0.02 1.38 16 40 H 0.04 1.79 6.72 -2.39 -0.02 1.77 16 41 H 0.06 1.87 8.04 -2.38 -0.02 1.85 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.07 2.21 7.32 -2.39 -0.02 2.20 16 44 H 0.03 1.65 6.40 -2.39 -0.02 1.63 16 45 H 0.00 -0.02 8.03 -2.39 -0.02 -0.04 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 48 H 0.04 1.57 7.99 -2.39 -0.02 1.55 16 49 H 0.05 2.20 6.04 -2.39 -0.01 2.18 16 50 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -75.76 387.66 6.38 -69.38 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.93 Total: 9.29 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 6.33 Total: 6.43 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -3.71 Total: -114.41 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.80 Total: -20.57 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -75.76 6.38 -69.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997916838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.340 kcal (2) G-P(sol) polarization free energy of solvation -75.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds