Wall clock time and date at job start Tue Mar 31 2020 19:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47165 * 2 1 4 4 C 1.34777 * 120.00159 * 83.06134 * 3 2 1 5 5 O 1.21585 * 120.00299 * 184.92345 * 4 3 2 6 6 C 1.47517 * 119.99914 * 4.92835 * 4 3 2 7 7 O 1.34640 * 126.94182 * 4.03106 * 6 4 3 8 8 N 1.20886 * 111.46574 * 179.82803 * 7 6 4 9 9 C 1.30133 * 111.98245 * 0.45624 * 8 7 6 10 10 C 1.50698 * 126.70313 * 179.68645 * 9 8 7 11 11 C 1.36826 * 126.94203 * 184.34964 * 6 4 3 12 12 C 1.50696 * 128.07832 * 359.97438 * 11 6 4 13 13 C 1.46500 * 120.00048 * 263.06756 * 3 2 1 14 14 H 1.09005 * 109.20225 * 359.97438 * 13 3 2 15 15 C 1.50128 * 109.21147 * 119.35576 * 13 3 2 16 16 C 1.52526 * 105.41647 * 218.02562 * 15 13 3 17 17 C 1.46242 * 114.27798 * 270.59668 * 16 15 13 18 18 N 1.50168 * 107.53180 * 58.41036 * 17 16 15 19 19 C 1.36937 * 120.53841 * 109.56727 * 18 17 16 20 20 H 1.08001 * 119.99669 * 146.04687 * 19 18 17 21 21 C 1.38807 * 119.99928 * 326.04259 * 19 18 17 22 22 N 1.31628 * 120.00022 * 3.77593 * 21 19 18 23 23 Si 1.86797 * 120.00047 * 183.76877 * 21 19 18 24 24 H 1.48500 * 109.47268 * 90.00496 * 23 21 19 25 25 H 1.48500 * 109.47083 * 210.00440 * 23 21 19 26 26 H 1.48502 * 109.47310 * 330.00272 * 23 21 19 27 27 C 1.43431 * 118.92114 * 289.58538 * 18 17 16 28 28 C 1.54846 * 109.20801 * 240.63847 * 13 3 2 29 29 H 1.09002 * 109.47347 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47257 * 299.99608 * 1 2 3 31 31 H 1.08990 * 109.47307 * 60.00054 * 1 2 3 32 32 H 1.09003 * 109.47098 * 120.00168 * 2 1 3 33 33 H 1.08996 * 109.46839 * 239.99594 * 2 1 3 34 34 H 1.09006 * 109.47112 * 270.03710 * 10 9 8 35 35 H 1.09000 * 109.47497 * 30.04162 * 10 9 8 36 36 H 1.09003 * 109.46856 * 150.04415 * 10 9 8 37 37 H 1.09001 * 109.47378 * 89.99968 * 12 11 6 38 38 H 1.09001 * 109.46973 * 210.00249 * 12 11 6 39 39 H 1.09007 * 109.46882 * 329.99900 * 12 11 6 40 40 H 1.08997 * 110.24558 * 337.00410 * 15 13 3 41 41 H 1.08997 * 110.24578 * 98.91201 * 15 13 3 42 42 H 1.08995 * 108.52415 * 31.83961 * 16 15 13 43 43 H 1.09008 * 108.51844 * 149.35827 * 16 15 13 44 44 H 1.08997 * 109.83909 * 177.91733 * 17 16 15 45 45 H 1.09000 * 109.84228 * 298.90362 * 17 16 15 46 46 H 0.97001 * 119.99840 * 180.02562 * 22 21 19 47 47 H 1.09007 * 108.15753 * 213.28665 * 27 18 17 48 48 H 1.08994 * 108.16331 * 330.06300 * 27 18 17 49 49 H 1.08995 * 109.35431 * 320.99615 * 28 13 3 50 50 H 1.09000 * 109.35352 * 80.58082 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1101 2.0636 1.1586 5 8 2.4294 3.2367 1.1497 6 6 1.8230 1.3871 2.4377 7 8 1.5335 0.0845 2.6171 8 7 1.3497 -0.1713 3.7842 9 6 1.4730 0.8817 4.5389 10 6 1.3076 0.9415 6.0355 11 6 1.7914 1.9578 3.6809 12 6 2.0386 3.3981 4.0489 13 6 2.4069 2.0208 -1.2594 14 1 2.2638 1.3159 -2.0786 15 6 1.5426 3.2267 -1.4883 16 6 1.2682 3.2502 -2.9885 17 6 2.2570 3.9930 -3.7691 18 7 3.5971 3.3637 -3.5179 19 6 4.2252 2.6480 -4.5019 20 1 5.3025 2.6630 -4.5767 21 6 3.4771 1.9030 -5.4032 22 7 2.1622 1.9433 -5.3588 23 14 4.3366 0.8436 -6.6792 24 1 4.5615 -0.5153 -6.1242 25 1 3.4892 0.7476 -7.8949 26 1 5.6423 1.4561 -7.0331 27 6 4.2084 3.5243 -2.2303 28 6 3.9009 2.4213 -1.1877 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 0.2670 1.1575 6.2778 35 1 1.5907 -0.0168 6.4710 36 1 1.9455 1.7273 6.4404 37 1 1.0975 3.9473 4.0194 38 1 2.4580 3.4495 5.0536 39 1 2.7391 3.8392 3.3397 40 1 0.6081 3.1315 -0.9353 41 1 2.0693 4.1314 -1.1848 42 1 1.2412 2.2229 -3.3517 43 1 0.2885 3.6983 -3.1544 44 1 2.0126 3.9323 -4.8295 45 1 2.2722 5.0354 -3.4509 46 1 1.6395 1.4225 -5.9885 47 1 5.2886 3.5682 -2.3702 48 1 3.8827 4.4784 -1.8161 49 1 4.1274 2.7942 -0.1889 50 1 4.5194 1.5477 -1.3939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998034645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:47 Heat of formation + Delta-G solvation = 58.442676 kcal Electronic energy + Delta-G solvation = -31350.200516 eV Core-core repulsion = 27382.114141 eV Total energy + Delta-G solvation = -3968.086375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.08459 -40.11105 -37.48145 -36.09870 -35.20972 -33.34316 -32.41091 -31.52121 -30.86161 -29.52874 -28.97489 -28.20835 -26.13167 -24.55099 -23.70913 -23.20413 -22.11302 -21.87136 -20.04169 -19.70202 -18.71827 -17.90624 -17.06320 -16.78588 -16.15189 -15.74285 -15.22605 -14.75312 -14.25987 -14.04990 -13.82648 -13.81323 -13.75878 -13.61326 -13.21968 -13.14850 -13.06495 -12.91896 -12.85566 -12.52990 -12.45363 -12.17393 -11.81113 -11.75146 -11.34113 -11.23730 -11.07444 -11.02561 -10.93369 -10.57395 -10.39353 -10.07682 -10.02928 -9.92684 -9.77622 -9.69595 -9.50466 -9.35696 -9.25117 -8.38130 -8.32374 -6.52360 -5.78123 -3.30959 0.79283 1.90371 2.63611 3.10108 3.28156 3.36289 3.43710 3.44896 3.89435 4.24215 4.49059 4.58608 4.75833 4.95425 5.12850 5.16191 5.29609 5.34196 5.36396 5.38051 5.49537 5.50688 5.51382 5.64123 5.65165 5.75997 5.80608 5.84567 5.91781 6.08142 6.12019 6.19439 6.28850 6.36997 6.43919 6.47707 6.64918 6.73923 6.86267 6.95933 7.04136 7.06582 7.19018 7.36402 7.58267 7.71266 7.81319 7.96255 8.03383 8.22640 8.53671 9.24356 9.86704 10.45404 11.27004 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.003311 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.808524 B = 8454.885410 C = 8925.724041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.593 5.593 4 C 0.597 3.403 5 O -0.504 6.504 6 C -0.080 4.080 7 O 0.117 5.883 8 N -0.354 5.354 9 C 0.008 3.992 10 C -0.073 4.073 11 C -0.128 4.128 12 C -0.084 4.084 13 C 0.165 3.835 14 H 0.102 0.898 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.163 3.837 18 N -0.592 5.592 19 C -0.247 4.247 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.902 5.902 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.166 3.834 28 C -0.151 4.151 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.026 0.974 44 H 0.097 0.903 45 H 0.001 0.999 46 H 0.252 0.748 47 H 0.032 0.968 48 H 0.031 0.969 49 H 0.060 0.940 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 -1.684 18.152 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.324 5.324 4 C 0.382 3.618 5 O -0.380 6.380 6 C -0.145 4.145 7 O 0.047 5.953 8 N -0.058 5.058 9 C -0.150 4.150 10 C -0.131 4.131 11 C -0.133 4.133 12 C -0.141 4.141 13 C 0.065 3.935 14 H 0.119 0.881 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.040 3.960 18 N -0.314 5.314 19 C -0.377 4.377 20 H 0.081 0.919 21 C -0.188 4.188 22 N -0.547 5.547 23 Si 0.729 3.271 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.036 3.964 28 C -0.193 4.193 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.045 0.955 44 H 0.115 0.885 45 H 0.019 0.981 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.078 0.922 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.194 -2.398 18.201 18.831 hybrid contribution 0.386 -0.320 -0.533 0.732 sum -3.807 -2.718 17.668 18.277 Atomic orbital electron populations 1.22159 0.95551 1.02270 1.02326 1.21855 0.94881 0.82431 1.03685 1.48534 1.62473 1.14114 1.07277 1.16623 0.78681 0.85700 0.80846 1.90816 1.47730 1.14129 1.85334 1.24338 1.07871 0.84689 0.97646 1.85131 1.64459 1.24962 1.20777 1.73684 1.17417 1.24362 0.90309 1.23463 1.03547 0.88798 0.99177 1.20169 1.03276 1.03794 0.85838 1.21450 1.02572 0.98776 0.90490 1.20311 1.03326 0.88090 1.02367 1.21519 0.94917 0.95327 0.81786 0.88055 1.21377 0.97816 0.98093 0.98039 1.20964 0.97789 1.05368 0.92340 1.20229 0.84095 0.90347 1.01308 1.44134 1.20434 1.59944 1.06843 1.19182 0.91000 1.20206 1.07354 0.91935 1.25235 0.95490 0.97884 1.00227 1.69883 1.03700 1.42870 1.38274 0.86342 0.78873 0.81041 0.80809 1.21476 1.21803 1.20612 1.20298 0.95970 0.94163 0.85927 1.23248 0.94228 1.01308 1.00518 0.91434 0.93225 0.91650 0.89917 0.89190 0.90069 0.90418 0.89900 0.90419 0.91112 0.88882 0.93510 0.91266 0.88568 0.95493 0.88503 0.98135 0.93719 0.94982 0.95115 0.92166 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.89 37.16 0.37 -1.68 16 2 C 0.09 1.28 5.72 -4.04 -0.02 1.26 16 3 N -0.59 -9.52 2.31 -167.86 -0.39 -9.91 16 4 C 0.60 9.69 6.77 -12.48 -0.08 9.61 16 5 O -0.50 -9.10 12.33 5.29 0.07 -9.03 16 6 C -0.08 -1.15 6.60 -36.31 -0.24 -1.39 16 7 O 0.12 1.60 7.34 15.56 0.11 1.72 16 8 N -0.35 -4.76 12.04 33.52 0.40 -4.36 16 9 C 0.01 0.10 7.31 -82.17 -0.60 -0.50 16 10 C -0.07 -0.55 10.39 36.00 0.37 -0.17 16 11 C -0.13 -1.61 6.36 -103.99 -0.66 -2.27 16 12 C -0.08 -0.87 9.90 36.00 0.36 -0.51 16 13 C 0.16 3.09 2.31 -68.39 -0.16 2.93 16 14 H 0.10 2.14 6.37 -51.93 -0.33 1.81 16 15 C -0.11 -2.22 4.12 -28.40 -0.12 -2.33 16 16 C -0.13 -2.67 4.98 -30.19 -0.15 -2.82 16 17 C 0.16 3.80 5.24 -5.20 -0.03 3.77 16 18 N -0.59 -14.31 2.59 -175.11 -0.45 -14.76 16 19 C -0.25 -6.50 9.58 -15.06 -0.14 -6.64 16 20 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 21 C 0.01 0.25 5.33 -17.43 -0.09 0.16 16 22 N -0.90 -23.83 8.85 55.49 0.49 -23.34 16 23 Si 0.90 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.17 3.56 5.18 -4.68 -0.02 3.53 16 28 C -0.15 -2.96 5.78 -24.78 -0.14 -3.10 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.63 7.47 -51.93 -0.39 0.24 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.05 5.15 -51.93 -0.27 0.78 16 33 H 0.09 1.20 7.77 -51.93 -0.40 0.80 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.47 7.65 -51.93 -0.40 0.07 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.55 7.65 -51.93 -0.40 0.15 16 39 H 0.09 1.13 6.66 -51.93 -0.35 0.79 16 40 H 0.05 0.87 7.87 -51.93 -0.41 0.46 16 41 H 0.07 1.41 5.96 -51.93 -0.31 1.10 16 42 H 0.10 2.28 5.21 -51.93 -0.27 2.01 16 43 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 44 H 0.10 2.51 6.11 -51.93 -0.32 2.19 16 45 H 0.00 0.01 8.12 -51.93 -0.42 -0.41 16 46 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 47 H 0.03 0.68 8.00 -51.92 -0.42 0.27 16 48 H 0.03 0.64 6.88 -51.93 -0.36 0.29 16 49 H 0.06 1.16 6.12 -51.93 -0.32 0.84 16 50 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -28.06 377.93 -8.32 -36.38 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.85 Total: 1.88 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.37 Total: -0.17 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.05 Total: -52.37 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.18 Total: -7.32 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.06 -8.32 -36.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998034645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.820 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds