Wall clock time and date at job start Tue Mar 31 2020 19:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47165 * 2 1 4 4 C 1.34777 * 120.00159 * 83.06134 * 3 2 1 5 5 O 1.21585 * 120.00299 * 184.92345 * 4 3 2 6 6 C 1.47517 * 119.99914 * 4.92835 * 4 3 2 7 7 O 1.34640 * 126.94182 * 4.03106 * 6 4 3 8 8 N 1.20886 * 111.46574 * 179.82803 * 7 6 4 9 9 C 1.30133 * 111.98245 * 0.45624 * 8 7 6 10 10 C 1.50698 * 126.70313 * 179.68645 * 9 8 7 11 11 C 1.36826 * 126.94203 * 184.34964 * 6 4 3 12 12 C 1.50696 * 128.07832 * 359.97438 * 11 6 4 13 13 C 1.46500 * 120.00048 * 263.06756 * 3 2 1 14 14 H 1.09005 * 109.20225 * 359.97438 * 13 3 2 15 15 C 1.50128 * 109.21147 * 119.35576 * 13 3 2 16 16 C 1.52526 * 105.41647 * 218.02562 * 15 13 3 17 17 C 1.46242 * 114.27798 * 270.59668 * 16 15 13 18 18 N 1.50168 * 107.53180 * 58.41036 * 17 16 15 19 19 C 1.36937 * 120.53841 * 109.56727 * 18 17 16 20 20 H 1.08001 * 119.99669 * 146.04687 * 19 18 17 21 21 C 1.38807 * 119.99928 * 326.04259 * 19 18 17 22 22 N 1.31628 * 120.00022 * 3.77593 * 21 19 18 23 23 Si 1.86797 * 120.00047 * 183.76877 * 21 19 18 24 24 H 1.48500 * 109.47268 * 90.00496 * 23 21 19 25 25 H 1.48500 * 109.47083 * 210.00440 * 23 21 19 26 26 H 1.48502 * 109.47310 * 330.00272 * 23 21 19 27 27 C 1.43431 * 118.92114 * 289.58538 * 18 17 16 28 28 C 1.54846 * 109.20801 * 240.63847 * 13 3 2 29 29 H 1.09002 * 109.47347 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47257 * 299.99608 * 1 2 3 31 31 H 1.08990 * 109.47307 * 60.00054 * 1 2 3 32 32 H 1.09003 * 109.47098 * 120.00168 * 2 1 3 33 33 H 1.08996 * 109.46839 * 239.99594 * 2 1 3 34 34 H 1.09006 * 109.47112 * 270.03710 * 10 9 8 35 35 H 1.09000 * 109.47497 * 30.04162 * 10 9 8 36 36 H 1.09003 * 109.46856 * 150.04415 * 10 9 8 37 37 H 1.09001 * 109.47378 * 89.99968 * 12 11 6 38 38 H 1.09001 * 109.46973 * 210.00249 * 12 11 6 39 39 H 1.09007 * 109.46882 * 329.99900 * 12 11 6 40 40 H 1.08997 * 110.24558 * 337.00410 * 15 13 3 41 41 H 1.08997 * 110.24578 * 98.91201 * 15 13 3 42 42 H 1.08995 * 108.52415 * 31.83961 * 16 15 13 43 43 H 1.09008 * 108.51844 * 149.35827 * 16 15 13 44 44 H 1.08997 * 109.83909 * 177.91733 * 17 16 15 45 45 H 1.09000 * 109.84228 * 298.90362 * 17 16 15 46 46 H 0.97001 * 119.99840 * 180.02562 * 22 21 19 47 47 H 1.09007 * 108.15753 * 213.28665 * 27 18 17 48 48 H 1.08994 * 108.16331 * 330.06300 * 27 18 17 49 49 H 1.08995 * 109.35431 * 320.99615 * 28 13 3 50 50 H 1.09000 * 109.35352 * 80.58082 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1101 2.0636 1.1586 5 8 2.4294 3.2367 1.1497 6 6 1.8230 1.3871 2.4377 7 8 1.5335 0.0845 2.6171 8 7 1.3497 -0.1713 3.7842 9 6 1.4730 0.8817 4.5389 10 6 1.3076 0.9415 6.0355 11 6 1.7914 1.9578 3.6809 12 6 2.0386 3.3981 4.0489 13 6 2.4069 2.0208 -1.2594 14 1 2.2638 1.3159 -2.0786 15 6 1.5426 3.2267 -1.4883 16 6 1.2682 3.2502 -2.9885 17 6 2.2570 3.9930 -3.7691 18 7 3.5971 3.3637 -3.5179 19 6 4.2252 2.6480 -4.5019 20 1 5.3025 2.6630 -4.5767 21 6 3.4771 1.9030 -5.4032 22 7 2.1622 1.9433 -5.3588 23 14 4.3366 0.8436 -6.6792 24 1 4.5615 -0.5153 -6.1242 25 1 3.4892 0.7476 -7.8949 26 1 5.6423 1.4561 -7.0331 27 6 4.2084 3.5243 -2.2303 28 6 3.9009 2.4213 -1.1877 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 0.2670 1.1575 6.2778 35 1 1.5907 -0.0168 6.4710 36 1 1.9455 1.7273 6.4404 37 1 1.0975 3.9473 4.0194 38 1 2.4580 3.4495 5.0536 39 1 2.7391 3.8392 3.3397 40 1 0.6081 3.1315 -0.9353 41 1 2.0693 4.1314 -1.1848 42 1 1.2412 2.2229 -3.3517 43 1 0.2885 3.6983 -3.1544 44 1 2.0126 3.9323 -4.8295 45 1 2.2722 5.0354 -3.4509 46 1 1.6395 1.4225 -5.9885 47 1 5.2886 3.5682 -2.3702 48 1 3.8827 4.4784 -1.8161 49 1 4.1274 2.7942 -0.1889 50 1 4.5194 1.5477 -1.3939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998034645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:46 Heat of formation + Delta-G solvation = 45.170027 kcal Electronic energy + Delta-G solvation = -31350.776061 eV Core-core repulsion = 27382.114141 eV Total energy + Delta-G solvation = -3968.661920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.05093 -41.47697 -39.10933 -37.33937 -36.24489 -34.92948 -33.58550 -33.30026 -32.45723 -30.78824 -29.79945 -29.15720 -27.91164 -26.00409 -25.37358 -24.58678 -23.34332 -22.83495 -21.60579 -21.30057 -20.04338 -18.90247 -18.62827 -18.21188 -17.33074 -17.16990 -16.92548 -16.24830 -15.75624 -15.60345 -15.27329 -14.93960 -14.83442 -14.66160 -14.47489 -14.28611 -14.15263 -13.97275 -13.85025 -13.82933 -13.75112 -13.27800 -13.22157 -13.15175 -12.99472 -12.90806 -12.69659 -12.34070 -12.22416 -12.14869 -12.04646 -11.89034 -11.57455 -11.44340 -11.26325 -11.22761 -10.93919 -10.86708 -10.51125 -10.33984 -9.68537 -8.45764 -7.78185 -5.33430 -0.28276 0.99738 1.49442 1.50144 1.52481 1.59031 1.88798 2.10703 2.55208 3.06458 3.24301 3.35499 3.59223 3.67975 3.84011 3.96276 4.01508 4.11705 4.19226 4.28978 4.39796 4.47833 4.51366 4.61437 4.65282 4.68196 4.71087 4.75215 4.79236 4.80617 4.87602 4.91209 4.93514 4.99920 5.06957 5.10530 5.16126 5.22370 5.25378 5.33424 5.34834 5.40240 5.56998 5.66556 5.71651 5.84282 6.20688 6.27742 6.53813 6.84118 7.07874 7.25123 7.92187 8.48219 9.24442 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.003311 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.808524 B = 8454.885410 C = 8925.724041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.598 3.402 5 O -0.527 6.527 6 C -0.102 4.102 7 O 0.107 5.893 8 N -0.370 5.370 9 C 0.016 3.984 10 C -0.075 4.075 11 C -0.122 4.122 12 C -0.083 4.083 13 C 0.177 3.823 14 H 0.077 0.923 15 C -0.098 4.098 16 C -0.114 4.114 17 C 0.167 3.833 18 N -0.603 5.603 19 C -0.264 4.264 20 H 0.056 0.944 21 C -0.028 4.028 22 N -0.913 5.913 23 Si 0.957 3.043 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.278 1.278 27 C 0.166 3.834 28 C -0.140 4.140 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.010 0.990 46 H 0.249 0.751 47 H 0.030 0.970 48 H 0.035 0.965 49 H 0.066 0.934 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 -2.106 20.480 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.384 3.616 5 O -0.405 6.405 6 C -0.167 4.167 7 O 0.039 5.961 8 N -0.076 5.076 9 C -0.143 4.143 10 C -0.132 4.132 11 C -0.127 4.127 12 C -0.140 4.140 13 C 0.076 3.924 14 H 0.095 0.905 15 C -0.137 4.137 16 C -0.153 4.153 17 C 0.044 3.956 18 N -0.325 5.325 19 C -0.395 4.395 20 H 0.074 0.926 21 C -0.225 4.225 22 N -0.558 5.558 23 Si 0.786 3.214 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.204 1.204 27 C 0.037 3.963 28 C -0.181 4.181 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.028 0.972 46 H 0.059 0.941 47 H 0.048 0.952 48 H 0.053 0.947 49 H 0.084 0.916 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.503 -2.830 20.534 21.212 hybrid contribution 0.482 -0.154 -1.178 1.282 sum -4.022 -2.984 19.356 19.993 Atomic orbital electron populations 1.22083 0.94528 1.03433 1.01407 1.21996 0.95671 0.81096 1.04139 1.48461 1.62681 1.15011 1.06459 1.16787 0.78003 0.85501 0.81341 1.90796 1.48764 1.15079 1.85874 1.24032 1.10004 0.85417 0.97279 1.85098 1.65181 1.24590 1.21183 1.73677 1.18271 1.25257 0.90376 1.24100 1.01665 0.87640 1.00873 1.20408 1.04880 1.05109 0.82798 1.21867 1.00935 0.99952 0.89964 1.20394 1.03486 0.86562 1.03550 1.21089 0.94257 0.94608 0.82472 0.90480 1.21187 0.98089 0.97901 0.96474 1.20762 0.97637 1.03569 0.93344 1.20126 0.84426 0.91091 0.99986 1.44226 1.20673 1.60097 1.07530 1.19321 0.90927 1.20879 1.08344 0.92598 1.25784 0.96119 0.98739 1.01865 1.70035 1.04346 1.42888 1.38520 0.85452 0.77900 0.79439 0.78630 1.21390 1.22081 1.20357 1.20324 0.95641 0.94986 0.85369 1.23073 0.94799 1.00275 0.99981 0.89264 0.93529 0.93004 0.88828 0.89303 0.88432 0.89742 0.87654 0.89435 0.87941 0.90863 0.92757 0.92068 0.90850 0.94647 0.91260 0.97194 0.94126 0.95215 0.94664 0.91574 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.89 71.98 0.71 -3.06 16 2 C 0.09 2.49 5.72 86.38 0.49 2.98 16 3 N -0.60 -19.07 2.31 -803.24 -1.85 -20.92 16 4 C 0.60 19.13 6.77 86.69 0.59 19.72 16 5 O -0.53 -18.84 12.33 -3.98 -0.05 -18.89 16 6 C -0.10 -2.82 6.60 24.39 0.16 -2.66 16 7 O 0.11 2.83 7.34 65.85 0.48 3.31 16 8 N -0.37 -9.30 12.04 -48.86 -0.59 -9.88 16 9 C 0.02 0.33 7.31 43.55 0.32 0.64 16 10 C -0.07 -0.84 10.39 71.24 0.74 -0.10 16 11 C -0.12 -2.83 6.36 -19.45 -0.12 -2.95 16 12 C -0.08 -1.52 9.90 71.23 0.71 -0.82 16 13 C 0.18 6.72 2.31 44.70 0.10 6.82 16 14 H 0.08 3.34 6.37 -2.38 -0.02 3.33 16 15 C -0.10 -3.79 4.12 29.51 0.12 -3.67 16 16 C -0.11 -4.91 4.98 28.36 0.14 -4.77 16 17 C 0.17 7.89 5.24 83.58 0.44 8.33 16 18 N -0.60 -29.60 2.59 -707.93 -1.84 -31.44 16 19 C -0.26 -14.09 9.58 84.03 0.81 -13.29 16 20 H 0.06 3.00 7.83 -2.91 -0.02 2.98 16 21 C -0.03 -1.50 5.33 84.86 0.45 -1.05 16 22 N -0.91 -49.03 8.85 21.65 0.19 -48.83 16 23 Si 0.96 43.37 29.55 68.60 2.03 45.40 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 C 0.17 7.15 5.18 87.58 0.45 7.60 16 28 C -0.14 -5.50 5.78 31.86 0.18 -5.32 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.14 7.47 -2.39 -0.02 1.13 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 2.32 5.15 -2.39 -0.01 2.31 16 33 H 0.09 2.37 7.77 -2.39 -0.02 2.36 16 34 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.72 7.65 -2.39 -0.02 0.70 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 1.20 7.65 -2.39 -0.02 1.18 16 39 H 0.07 1.68 6.66 -2.38 -0.02 1.67 16 40 H 0.05 2.00 7.87 -2.39 -0.02 1.98 16 41 H 0.06 2.48 5.96 -2.39 -0.01 2.47 16 42 H 0.07 3.55 5.21 -2.39 -0.01 3.54 16 43 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.07 3.67 6.11 -2.39 -0.01 3.66 16 45 H 0.01 0.45 8.12 -2.39 -0.02 0.43 16 46 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 47 H 0.03 1.28 8.00 -2.38 -0.02 1.26 16 48 H 0.04 1.48 6.88 -2.39 -0.02 1.46 16 49 H 0.07 2.53 6.12 -2.39 -0.01 2.52 16 50 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -60.45 377.93 5.61 -54.83 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.95 Total: 18.00 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 6.29 Total: 8.43 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -4.09 Total: -111.08 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.43 Total: -15.58 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -60.45 5.61 -54.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998034645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.004 kcal (2) G-P(sol) polarization free energy of solvation -60.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds