Wall clock time and date at job start Tue Mar 31 2020 19:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47341 * 2 1 4 4 C 1.34783 * 119.99317 * 275.05087 * 3 2 1 5 5 O 1.21584 * 119.99527 * 185.09824 * 4 3 2 6 6 C 1.47506 * 120.00551 * 5.09615 * 4 3 2 7 7 O 1.34639 * 126.94062 * 5.81258 * 6 4 3 8 8 N 1.20889 * 111.47085 * 179.97438 * 7 6 4 9 9 C 1.30131 * 111.97745 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.70255 * 179.97438 * 9 8 7 11 11 C 1.36815 * 126.94768 * 185.48607 * 6 4 3 12 12 C 1.50712 * 128.07625 * 0.04169 * 11 6 4 13 13 C 1.46495 * 120.00473 * 95.04641 * 3 2 1 14 14 H 1.08999 * 109.48970 * 0.02562 * 13 3 2 15 15 C 1.52569 * 109.49332 * 239.95627 * 13 3 2 16 16 C 1.47096 * 114.32830 * 155.01991 * 15 13 3 17 17 C 1.54866 * 110.32129 * 62.80210 * 16 15 13 18 18 N 1.44573 * 109.59952 * 288.73742 * 17 16 15 19 19 C 1.36939 * 118.64385 * 270.72414 * 18 17 16 20 20 H 1.07996 * 119.99899 * 27.94126 * 19 18 17 21 21 C 1.38815 * 120.00182 * 207.94749 * 19 18 17 22 22 N 1.31621 * 119.99784 * 15.40607 * 21 19 18 23 23 Si 1.86800 * 119.99973 * 195.40705 * 21 19 18 24 24 H 1.48501 * 109.47111 * 59.99705 * 23 21 19 25 25 H 1.48497 * 109.46985 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46990 * 299.99679 * 23 21 19 27 27 C 1.47609 * 122.71691 * 90.70441 * 18 17 16 28 28 C 1.50880 * 109.49083 * 120.04661 * 13 3 2 29 29 H 1.08993 * 109.47263 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47032 * 300.00653 * 1 2 3 31 31 H 1.08997 * 109.47128 * 59.99808 * 1 2 3 32 32 H 1.08994 * 109.47251 * 239.99877 * 2 1 3 33 33 H 1.09004 * 109.47262 * 119.99517 * 2 1 3 34 34 H 1.08994 * 109.47491 * 90.02342 * 10 9 8 35 35 H 1.09004 * 109.47049 * 210.02167 * 10 9 8 36 36 H 1.09004 * 109.47183 * 330.01919 * 10 9 8 37 37 H 1.08998 * 109.46978 * 89.99276 * 12 11 6 38 38 H 1.08999 * 109.46823 * 209.99999 * 12 11 6 39 39 H 1.09001 * 109.46448 * 329.99841 * 12 11 6 40 40 H 1.09002 * 108.51311 * 276.27687 * 15 13 3 41 41 H 1.08997 * 108.51137 * 33.76571 * 15 13 3 42 42 H 1.08998 * 109.32882 * 183.06807 * 16 15 13 43 43 H 1.09004 * 109.32683 * 302.54268 * 16 15 13 44 44 H 1.09004 * 109.44789 * 48.77267 * 17 16 15 45 45 H 1.08995 * 109.44569 * 168.69515 * 17 16 15 46 46 H 0.97007 * 119.99828 * 180.02562 * 22 21 19 47 47 H 1.09004 * 108.94416 * 78.56980 * 27 18 17 48 48 H 1.09001 * 108.94774 * 197.28832 * 27 18 17 49 49 H 1.09002 * 109.36752 * 332.04910 * 28 13 3 50 50 H 1.09009 * 109.36650 * 91.65943 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1461 2.0507 -1.1628 5 8 2.6379 3.1626 -1.1732 6 6 1.6893 1.4346 -2.4228 7 8 1.0313 0.2680 -2.5611 8 7 0.7922 0.0299 -3.7219 9 6 1.2351 0.9642 -4.5120 10 6 1.1184 1.0038 -6.0140 11 6 1.8431 1.9359 -3.6864 12 6 2.5083 3.2231 -4.1011 13 6 2.3678 2.0347 1.2637 14 1 2.2009 1.3428 2.0892 15 6 1.4980 3.2737 1.4537 16 6 1.3179 3.6783 2.8564 17 6 2.6798 4.0663 3.4834 18 7 3.4812 2.8784 3.6753 19 6 3.3672 2.1932 4.8555 20 1 2.4423 2.2267 5.4121 21 6 4.4404 1.4558 5.3364 22 7 5.6449 1.6471 4.8414 23 14 4.1752 0.1919 6.6861 24 1 3.2133 -0.8380 6.2178 25 1 5.4696 -0.4545 7.0203 26 1 3.6319 0.8640 7.8937 27 6 4.4171 2.3734 2.6516 28 6 3.8202 2.4423 1.2349 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.1938 1.5088 -6.2934 35 1 1.9680 1.5450 -6.4303 36 1 1.1090 -0.0138 -6.4047 37 1 3.5669 3.0415 -4.2868 38 1 2.0389 3.5980 -5.0106 39 1 2.4002 3.9605 -3.3058 40 1 1.9523 4.1021 0.9101 41 1 0.5169 3.0773 1.0214 42 1 0.6433 4.5333 2.9015 43 1 0.8849 2.8504 3.4179 44 1 3.2029 4.7535 2.8183 45 1 2.5116 4.5501 4.4455 46 1 6.3948 1.1315 5.1772 47 1 5.3290 2.9698 2.6808 48 1 4.6651 1.3367 2.8795 49 1 4.3713 1.7701 0.5773 50 1 3.9022 3.4617 0.8575 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998034647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:50 Heat of formation + Delta-G solvation = 48.630358 kcal Electronic energy + Delta-G solvation = -31160.609475 eV Core-core repulsion = 27192.097606 eV Total energy + Delta-G solvation = -3968.511869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.13872 -40.20534 -37.51940 -36.12982 -35.25033 -33.58478 -32.66225 -31.61936 -30.68477 -29.73924 -29.07216 -28.27759 -26.03434 -24.66649 -23.66016 -23.24913 -22.25908 -21.94637 -20.41957 -19.44988 -18.93331 -17.98334 -17.22822 -16.67011 -16.23967 -15.87246 -15.14177 -14.73933 -14.43821 -14.24012 -13.97263 -13.82456 -13.81532 -13.65201 -13.37328 -13.14039 -13.10131 -13.01254 -12.87530 -12.59311 -12.54596 -12.33467 -11.98006 -11.90609 -11.41566 -11.26892 -11.10271 -11.08891 -10.86284 -10.80732 -10.41592 -10.26660 -10.12451 -10.05220 -9.83165 -9.74477 -9.63112 -9.54563 -9.46249 -8.49845 -8.36569 -6.61589 -5.75962 -3.21182 0.73832 1.85511 2.57720 3.03821 3.17847 3.38144 3.44587 3.45016 3.85498 4.18668 4.51305 4.52863 4.75060 4.91384 5.03981 5.14196 5.22486 5.29410 5.33259 5.35717 5.37446 5.43869 5.46022 5.54777 5.58719 5.62328 5.71330 5.75229 5.84020 5.94862 6.02573 6.08069 6.14142 6.23194 6.33248 6.41656 6.50871 6.57731 6.63571 6.71923 6.84446 6.94373 7.01182 7.11551 7.41464 7.49482 7.72329 7.84449 7.90556 8.15013 8.50304 9.26710 9.93664 10.40185 11.31226 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.003236 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.941065 B = 8651.108795 C = 9067.101513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.592 5.592 4 C 0.599 3.401 5 O -0.504 6.504 6 C -0.083 4.083 7 O 0.120 5.880 8 N -0.353 5.353 9 C 0.008 3.992 10 C -0.074 4.074 11 C -0.126 4.126 12 C -0.085 4.085 13 C 0.164 3.836 14 H 0.104 0.896 15 C -0.110 4.110 16 C -0.142 4.142 17 C 0.156 3.844 18 N -0.592 5.592 19 C -0.260 4.260 20 H 0.064 0.936 21 C 0.006 3.994 22 N -0.903 5.903 23 Si 0.899 3.101 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.183 3.817 28 C -0.145 4.145 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.045 0.955 46 H 0.253 0.747 47 H 0.028 0.972 48 H 0.070 0.930 49 H 0.053 0.947 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 -1.046 -18.443 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.024 4.024 3 N -0.324 5.324 4 C 0.383 3.617 5 O -0.379 6.379 6 C -0.148 4.148 7 O 0.049 5.951 8 N -0.056 5.056 9 C -0.150 4.150 10 C -0.131 4.131 11 C -0.130 4.130 12 C -0.142 4.142 13 C 0.063 3.937 14 H 0.122 0.878 15 C -0.149 4.149 16 C -0.183 4.183 17 C 0.028 3.972 18 N -0.313 5.313 19 C -0.390 4.390 20 H 0.082 0.918 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.729 3.271 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.057 3.943 28 C -0.185 4.185 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.089 0.911 49 H 0.071 0.929 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.346 -1.661 -18.593 20.876 hybrid contribution 0.155 -0.297 0.593 0.681 sum -9.191 -1.958 -18.000 20.306 Atomic orbital electron populations 1.22196 0.95494 1.02451 1.02282 1.21765 0.94923 0.82083 1.03647 1.48412 1.63461 1.14035 1.06503 1.16607 0.79306 0.84912 0.80838 1.90819 1.43807 1.18430 1.84862 1.24230 1.03553 0.89618 0.97434 1.85155 1.55495 1.33117 1.21337 1.73690 1.18902 1.22936 0.90029 1.23480 1.00614 0.91834 0.99098 1.20172 1.03498 1.03808 0.85647 1.21466 1.01600 0.99486 0.90495 1.20324 0.99594 0.91700 1.02591 1.20746 0.95417 0.95152 0.82336 0.87821 1.20645 0.98238 0.97814 0.98155 1.21432 1.00789 1.00400 0.95665 1.20705 0.89808 0.89069 0.97581 1.43671 1.47321 1.25873 1.14483 1.19149 0.96133 1.24732 0.98946 0.91808 1.25064 0.94817 1.01203 0.98197 1.70059 0.98253 1.41512 1.44852 0.86431 0.76755 0.81843 0.82077 1.21075 1.21734 1.20937 1.20944 0.90375 1.00069 0.82905 1.22416 0.94067 1.01328 1.00676 0.91339 0.91990 0.92688 0.90416 0.89060 0.90074 0.89845 0.90359 0.90340 0.91037 0.88866 0.91704 0.94068 0.93224 0.92247 0.94862 0.93682 0.93653 0.95401 0.91133 0.92873 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.63 37.16 0.36 -1.52 16 2 C 0.10 1.24 5.68 -4.04 -0.02 1.22 16 3 N -0.59 -8.97 2.27 -168.82 -0.38 -9.35 16 4 C 0.60 9.30 7.04 -12.48 -0.09 9.22 16 5 O -0.50 -8.79 12.31 5.29 0.07 -8.72 16 6 C -0.08 -1.14 6.60 -36.32 -0.24 -1.38 16 7 O 0.12 1.58 6.37 15.56 0.10 1.68 16 8 N -0.35 -4.57 12.04 33.52 0.40 -4.17 16 9 C 0.01 0.09 7.31 -82.17 -0.60 -0.51 16 10 C -0.07 -0.53 10.39 36.01 0.37 -0.15 16 11 C -0.13 -1.53 6.36 -103.98 -0.66 -2.19 16 12 C -0.09 -0.85 9.92 36.01 0.36 -0.50 16 13 C 0.16 2.87 2.17 -69.22 -0.15 2.72 16 14 H 0.10 1.99 7.07 -51.93 -0.37 1.62 16 15 C -0.11 -1.88 4.00 -29.79 -0.12 -2.00 16 16 C -0.14 -2.51 5.74 -28.58 -0.16 -2.67 16 17 C 0.16 3.24 5.66 -4.09 -0.02 3.22 16 18 N -0.59 -14.20 2.27 -172.12 -0.39 -14.59 16 19 C -0.26 -6.84 9.42 -15.06 -0.14 -6.98 16 20 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 21 C 0.01 0.16 4.86 -17.43 -0.08 0.08 16 22 N -0.90 -25.66 11.10 55.49 0.62 -25.05 16 23 Si 0.90 21.22 29.58 -169.99 -5.03 16.19 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.18 4.27 4.66 -2.97 -0.01 4.26 16 28 C -0.15 -2.83 4.23 -27.33 -0.12 -2.94 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 31 H 0.05 0.65 6.35 -51.93 -0.33 0.32 16 32 H 0.08 0.93 5.96 -51.93 -0.31 0.62 16 33 H 0.09 1.13 7.82 -51.93 -0.41 0.72 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.10 6.64 -51.93 -0.34 0.75 16 40 H 0.06 1.18 6.41 -51.93 -0.33 0.85 16 41 H 0.04 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 45 H 0.04 0.95 7.99 -51.93 -0.41 0.53 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.03 0.72 8.02 -51.93 -0.42 0.31 16 48 H 0.07 1.82 6.44 -51.93 -0.33 1.48 16 49 H 0.05 1.01 7.97 -51.93 -0.41 0.60 16 50 H 0.06 1.26 6.61 -51.92 -0.34 0.92 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -29.67 383.78 -8.37 -38.04 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.20 Total: 0.32 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.34 Total: -0.13 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.25 Total: -53.16 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.16 Total: -7.05 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.67 -8.37 -38.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998034647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.671 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds