Wall clock time and date at job start Tue Mar 31 2020 19:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47341 * 2 1 4 4 C 1.34783 * 119.99317 * 275.05087 * 3 2 1 5 5 O 1.21584 * 119.99527 * 185.09824 * 4 3 2 6 6 C 1.47506 * 120.00551 * 5.09615 * 4 3 2 7 7 O 1.34639 * 126.94062 * 5.81258 * 6 4 3 8 8 N 1.20889 * 111.47085 * 179.97438 * 7 6 4 9 9 C 1.30131 * 111.97745 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.70255 * 179.97438 * 9 8 7 11 11 C 1.36815 * 126.94768 * 185.48607 * 6 4 3 12 12 C 1.50712 * 128.07625 * 0.04169 * 11 6 4 13 13 C 1.46495 * 120.00473 * 95.04641 * 3 2 1 14 14 H 1.08999 * 109.48970 * 0.02562 * 13 3 2 15 15 C 1.52569 * 109.49332 * 239.95627 * 13 3 2 16 16 C 1.47096 * 114.32830 * 155.01991 * 15 13 3 17 17 C 1.54866 * 110.32129 * 62.80210 * 16 15 13 18 18 N 1.44573 * 109.59952 * 288.73742 * 17 16 15 19 19 C 1.36939 * 118.64385 * 270.72414 * 18 17 16 20 20 H 1.07996 * 119.99899 * 27.94126 * 19 18 17 21 21 C 1.38815 * 120.00182 * 207.94749 * 19 18 17 22 22 N 1.31621 * 119.99784 * 15.40607 * 21 19 18 23 23 Si 1.86800 * 119.99973 * 195.40705 * 21 19 18 24 24 H 1.48501 * 109.47111 * 59.99705 * 23 21 19 25 25 H 1.48497 * 109.46985 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46990 * 299.99679 * 23 21 19 27 27 C 1.47609 * 122.71691 * 90.70441 * 18 17 16 28 28 C 1.50880 * 109.49083 * 120.04661 * 13 3 2 29 29 H 1.08993 * 109.47263 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47032 * 300.00653 * 1 2 3 31 31 H 1.08997 * 109.47128 * 59.99808 * 1 2 3 32 32 H 1.08994 * 109.47251 * 239.99877 * 2 1 3 33 33 H 1.09004 * 109.47262 * 119.99517 * 2 1 3 34 34 H 1.08994 * 109.47491 * 90.02342 * 10 9 8 35 35 H 1.09004 * 109.47049 * 210.02167 * 10 9 8 36 36 H 1.09004 * 109.47183 * 330.01919 * 10 9 8 37 37 H 1.08998 * 109.46978 * 89.99276 * 12 11 6 38 38 H 1.08999 * 109.46823 * 209.99999 * 12 11 6 39 39 H 1.09001 * 109.46448 * 329.99841 * 12 11 6 40 40 H 1.09002 * 108.51311 * 276.27687 * 15 13 3 41 41 H 1.08997 * 108.51137 * 33.76571 * 15 13 3 42 42 H 1.08998 * 109.32882 * 183.06807 * 16 15 13 43 43 H 1.09004 * 109.32683 * 302.54268 * 16 15 13 44 44 H 1.09004 * 109.44789 * 48.77267 * 17 16 15 45 45 H 1.08995 * 109.44569 * 168.69515 * 17 16 15 46 46 H 0.97007 * 119.99828 * 180.02562 * 22 21 19 47 47 H 1.09004 * 108.94416 * 78.56980 * 27 18 17 48 48 H 1.09001 * 108.94774 * 197.28832 * 27 18 17 49 49 H 1.09002 * 109.36752 * 332.04910 * 28 13 3 50 50 H 1.09009 * 109.36650 * 91.65943 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1461 2.0507 -1.1628 5 8 2.6379 3.1626 -1.1732 6 6 1.6893 1.4346 -2.4228 7 8 1.0313 0.2680 -2.5611 8 7 0.7922 0.0299 -3.7219 9 6 1.2351 0.9642 -4.5120 10 6 1.1184 1.0038 -6.0140 11 6 1.8431 1.9359 -3.6864 12 6 2.5083 3.2231 -4.1011 13 6 2.3678 2.0347 1.2637 14 1 2.2009 1.3428 2.0892 15 6 1.4980 3.2737 1.4537 16 6 1.3179 3.6783 2.8564 17 6 2.6798 4.0663 3.4834 18 7 3.4812 2.8784 3.6753 19 6 3.3672 2.1932 4.8555 20 1 2.4423 2.2267 5.4121 21 6 4.4404 1.4558 5.3364 22 7 5.6449 1.6471 4.8414 23 14 4.1752 0.1919 6.6861 24 1 3.2133 -0.8380 6.2178 25 1 5.4696 -0.4545 7.0203 26 1 3.6319 0.8640 7.8937 27 6 4.4171 2.3734 2.6516 28 6 3.8202 2.4423 1.2349 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.1938 1.5088 -6.2934 35 1 1.9680 1.5450 -6.4303 36 1 1.1090 -0.0138 -6.4047 37 1 3.5669 3.0415 -4.2868 38 1 2.0389 3.5980 -5.0106 39 1 2.4002 3.9605 -3.3058 40 1 1.9523 4.1021 0.9101 41 1 0.5169 3.0773 1.0214 42 1 0.6433 4.5333 2.9015 43 1 0.8849 2.8504 3.4179 44 1 3.2029 4.7535 2.8183 45 1 2.5116 4.5501 4.4455 46 1 6.3948 1.1315 5.1772 47 1 5.3290 2.9698 2.6808 48 1 4.6651 1.3367 2.8795 49 1 4.3713 1.7701 0.5773 50 1 3.9022 3.4617 0.8575 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998034647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:49 Heat of formation + Delta-G solvation = 33.736946 kcal Electronic energy + Delta-G solvation = -31161.255301 eV Core-core repulsion = 27192.097606 eV Total energy + Delta-G solvation = -3969.157696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.06406 -41.50215 -39.07182 -37.33260 -36.24859 -35.21701 -33.82958 -33.00586 -32.54979 -30.92656 -29.83577 -29.17076 -27.78403 -26.10296 -25.09560 -24.85766 -23.37104 -22.85883 -21.75840 -21.18533 -20.11265 -18.95384 -18.55509 -18.28562 -17.52237 -17.10027 -16.76125 -16.19357 -15.90521 -15.71484 -15.43926 -14.93085 -14.82805 -14.71639 -14.47755 -14.43660 -14.04161 -13.94425 -13.88844 -13.80391 -13.73303 -13.51402 -13.24790 -13.19229 -13.00681 -12.78613 -12.65815 -12.50295 -12.18497 -12.12183 -12.08880 -11.98083 -11.77139 -11.57362 -11.33485 -11.30143 -11.00153 -10.88190 -10.53607 -10.40043 -9.74961 -8.60849 -7.81531 -5.29535 -0.29207 0.98344 1.48267 1.50266 1.51326 1.58175 1.87546 2.07582 2.55241 3.05753 3.23810 3.32082 3.57476 3.69667 3.83377 3.90095 3.97937 4.04284 4.17388 4.29076 4.37515 4.44258 4.49587 4.51069 4.59654 4.67833 4.71252 4.72940 4.74220 4.78835 4.87082 4.89202 4.92543 4.97191 5.05202 5.09461 5.14528 5.21609 5.22950 5.30460 5.31612 5.33379 5.48140 5.57319 5.63365 5.71718 5.76888 6.25683 6.45326 6.83097 7.06357 7.22183 7.97346 8.39353 9.23808 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.003236 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.941065 B = 8651.108795 C = 9067.101513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 N -0.594 5.594 4 C 0.599 3.401 5 O -0.529 6.529 6 C -0.104 4.104 7 O 0.114 5.886 8 N -0.369 5.369 9 C 0.014 3.986 10 C -0.075 4.075 11 C -0.122 4.122 12 C -0.084 4.084 13 C 0.175 3.825 14 H 0.089 0.911 15 C -0.102 4.102 16 C -0.127 4.127 17 C 0.151 3.849 18 N -0.603 5.603 19 C -0.262 4.262 20 H 0.068 0.932 21 C -0.047 4.047 22 N -0.936 5.936 23 Si 0.962 3.038 24 H -0.275 1.275 25 H -0.299 1.299 26 H -0.278 1.278 27 C 0.198 3.802 28 C -0.125 4.125 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.033 0.967 45 H 0.041 0.959 46 H 0.248 0.752 47 H -0.007 1.007 48 H 0.042 0.958 49 H 0.053 0.947 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.171 -1.436 -20.241 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.325 5.325 4 C 0.385 3.615 5 O -0.406 6.406 6 C -0.169 4.169 7 O 0.045 5.955 8 N -0.074 5.074 9 C -0.144 4.144 10 C -0.132 4.132 11 C -0.127 4.127 12 C -0.141 4.141 13 C 0.073 3.927 14 H 0.107 0.893 15 C -0.140 4.140 16 C -0.167 4.167 17 C 0.025 3.975 18 N -0.325 5.325 19 C -0.392 4.392 20 H 0.086 0.914 21 C -0.242 4.242 22 N -0.582 5.582 23 Si 0.790 3.210 24 H -0.201 1.201 25 H -0.225 1.225 26 H -0.204 1.204 27 C 0.073 3.927 28 C -0.165 4.165 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.011 0.989 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.399 -2.050 -20.390 23.450 hybrid contribution 0.782 -0.123 1.070 1.330 sum -10.617 -2.172 -19.321 22.153 Atomic orbital electron populations 1.22119 0.94186 1.03570 1.01662 1.21922 0.95950 0.80653 1.04036 1.48365 1.63548 1.14915 1.05653 1.16780 0.78772 0.84643 0.81350 1.90803 1.44930 1.19476 1.85408 1.23958 1.05216 0.90585 0.97138 1.85136 1.55871 1.32884 1.21643 1.73678 1.19710 1.23782 0.90186 1.24094 0.98948 0.90600 1.00768 1.20402 1.05269 1.04876 0.82695 1.21867 1.00692 1.00081 0.90079 1.20395 1.00213 0.90254 1.03221 1.20409 0.93948 0.95221 0.83170 0.89321 1.20544 0.98708 0.97077 0.97697 1.21254 0.98905 1.01190 0.95374 1.20863 0.90982 0.87987 0.97710 1.43852 1.47630 1.26914 1.14151 1.19455 0.96048 1.24349 0.99360 0.91400 1.25783 0.94583 1.03195 1.00640 1.70228 0.98912 1.42582 1.46517 0.85429 0.76269 0.79632 0.79633 1.20096 1.22511 1.20351 1.20613 0.89578 0.97500 0.85036 1.22139 0.95599 1.01035 0.97705 0.89377 0.92542 0.93212 0.89673 0.88996 0.88408 0.87753 0.89714 0.89577 0.87925 0.90805 0.92581 0.92566 0.90475 0.92857 0.94874 0.94104 0.94318 0.98930 0.93912 0.92812 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.63 71.98 0.69 -2.64 16 2 C 0.10 2.35 5.68 86.38 0.49 2.84 16 3 N -0.59 -17.75 2.27 -806.28 -1.83 -19.58 16 4 C 0.60 18.35 7.04 86.69 0.61 18.96 16 5 O -0.53 -18.41 12.31 -3.98 -0.05 -18.46 16 6 C -0.10 -2.76 6.60 24.38 0.16 -2.59 16 7 O 0.11 2.85 6.37 65.85 0.42 3.27 16 8 N -0.37 -8.92 12.04 -48.86 -0.59 -9.50 16 9 C 0.01 0.28 7.31 43.55 0.32 0.60 16 10 C -0.08 -0.81 10.39 71.24 0.74 -0.07 16 11 C -0.12 -2.75 6.36 -19.45 -0.12 -2.88 16 12 C -0.08 -1.51 9.92 71.24 0.71 -0.81 16 13 C 0.17 6.10 2.17 44.16 0.10 6.19 16 14 H 0.09 3.41 7.07 -2.39 -0.02 3.40 16 15 C -0.10 -3.38 4.00 28.62 0.11 -3.27 16 16 C -0.13 -4.30 5.74 29.40 0.17 -4.13 16 17 C 0.15 6.26 5.66 87.38 0.49 6.75 16 18 N -0.60 -29.53 2.27 -698.48 -1.58 -31.12 16 19 C -0.26 -13.92 9.42 84.03 0.79 -13.13 16 20 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 21 C -0.05 -2.55 4.86 84.86 0.41 -2.14 16 22 N -0.94 -55.04 11.10 21.65 0.24 -54.80 16 23 Si 0.96 44.10 29.58 68.60 2.03 46.13 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 C 0.20 9.69 4.66 86.47 0.40 10.09 16 28 C -0.13 -5.00 4.23 30.20 0.13 -4.87 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.12 6.35 -2.39 -0.02 1.10 16 32 H 0.09 1.97 5.96 -2.39 -0.01 1.95 16 33 H 0.09 2.22 7.82 -2.39 -0.02 2.20 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.67 6.64 -2.39 -0.02 1.65 16 40 H 0.06 1.99 6.41 -2.39 -0.02 1.98 16 41 H 0.06 1.72 8.04 -2.39 -0.02 1.70 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.03 1.36 8.07 -2.38 -0.02 1.34 16 45 H 0.04 1.71 7.99 -2.39 -0.02 1.69 16 46 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 47 H -0.01 -0.41 8.02 -2.39 -0.02 -0.43 16 48 H 0.04 2.31 6.44 -2.39 -0.02 2.29 16 49 H 0.05 2.11 7.97 -2.39 -0.02 2.09 16 50 H 0.06 2.34 6.61 -2.38 -0.02 2.32 16 Total: -1.00 -65.33 383.78 5.77 -59.55 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.93 Total: 15.58 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 6.20 Total: 8.91 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.76 Total: -115.00 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.37 Total: -15.18 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -65.33 5.77 -59.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998034647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.290 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds