Wall clock time and date at job start Tue Mar 31 2020 19:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47149 * 2 1 4 4 C 1.34780 * 120.00375 * 83.50042 * 3 2 1 5 5 O 1.21609 * 120.00100 * 184.19967 * 4 3 2 6 6 C 1.47421 * 119.99596 * 4.20203 * 4 3 2 7 7 N 1.36063 * 126.45115 * 354.70358 * 6 4 3 8 8 C 1.29933 * 108.47952 * 180.16209 * 7 6 4 9 9 C 1.50695 * 125.38356 * 179.83897 * 8 7 6 10 10 O 1.34056 * 109.24102 * 359.57744 * 8 7 6 11 11 C 1.34261 * 108.22440 * 0.26544 * 10 8 7 12 12 C 1.50703 * 126.51968 * 180.02562 * 11 10 8 13 13 C 1.46497 * 120.00117 * 263.50155 * 3 2 1 14 14 H 1.09000 * 109.49161 * 0.04510 * 13 3 2 15 15 C 1.52567 * 109.49304 * 240.00084 * 13 3 2 16 16 C 1.47100 * 114.32978 * 155.01697 * 15 13 3 17 17 C 1.54861 * 110.31671 * 62.80305 * 16 15 13 18 18 N 1.44581 * 109.60511 * 288.73274 * 17 16 15 19 19 C 1.36939 * 118.64442 * 270.73081 * 18 17 16 20 20 H 1.08001 * 119.99518 * 27.62764 * 19 18 17 21 21 C 1.38811 * 119.99964 * 207.62907 * 19 18 17 22 22 N 1.31622 * 119.99725 * 17.88388 * 21 19 18 23 23 Si 1.86794 * 119.99792 * 197.88235 * 21 19 18 24 24 H 1.48498 * 109.47344 * 90.00444 * 23 21 19 25 25 H 1.48501 * 109.46879 * 210.00064 * 23 21 19 26 26 H 1.48495 * 109.47456 * 330.00013 * 23 21 19 27 27 C 1.47600 * 122.71258 * 90.74843 * 18 17 16 28 28 C 1.50884 * 109.49463 * 120.11426 * 13 3 2 29 29 H 1.08999 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47198 * 300.00697 * 1 2 3 31 31 H 1.09003 * 109.46567 * 60.00367 * 1 2 3 32 32 H 1.08998 * 109.47471 * 239.99776 * 2 1 3 33 33 H 1.09003 * 109.46567 * 119.99633 * 2 1 3 34 34 H 1.08998 * 109.47626 * 179.71938 * 9 8 7 35 35 H 1.09003 * 109.47156 * 299.72680 * 9 8 7 36 36 H 1.09004 * 109.46852 * 59.72150 * 9 8 7 37 37 H 1.08999 * 109.47197 * 359.97438 * 12 11 10 38 38 H 1.08998 * 109.46714 * 119.97282 * 12 11 10 39 39 H 1.09001 * 109.46812 * 239.97126 * 12 11 10 40 40 H 1.09000 * 108.51566 * 276.27356 * 15 13 3 41 41 H 1.08998 * 108.50947 * 33.92235 * 15 13 3 42 42 H 1.08995 * 109.32613 * 183.06443 * 16 15 13 43 43 H 1.08995 * 109.32762 * 302.54352 * 16 15 13 44 44 H 1.09000 * 109.45632 * 48.77934 * 17 16 15 45 45 H 1.09006 * 109.44553 * 168.69715 * 17 16 15 46 46 H 0.96997 * 119.99318 * 179.97438 * 22 21 19 47 47 H 1.08997 * 108.94634 * 78.53522 * 27 18 17 48 48 H 1.08998 * 108.94939 * 197.16308 * 27 18 17 49 49 H 1.09003 * 109.36364 * 332.04751 * 28 13 3 50 50 H 1.08998 * 109.36540 * 91.65650 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1185 2.0606 1.1597 5 8 2.4506 3.2305 1.1523 6 6 1.8253 1.3856 2.4371 7 7 1.3491 0.1205 2.5922 8 6 1.2156 -0.1164 3.8628 9 6 0.7115 -1.4038 4.4621 10 8 1.6026 0.9635 4.5565 11 6 1.9855 1.9086 3.6832 12 6 2.4961 3.2861 4.0191 13 6 2.3979 2.0239 -1.2605 14 1 2.2496 1.3254 -2.0841 15 6 3.8658 2.4355 -1.2004 16 6 4.5188 2.5451 -2.5139 17 6 3.8442 3.6538 -3.3589 18 7 2.5319 3.2142 -3.7772 19 6 2.4141 2.5303 -4.9577 20 1 3.2439 1.9473 -5.3291 21 6 1.2282 2.5864 -5.6770 22 7 0.3573 3.5436 -5.4364 23 14 0.8683 1.3035 -6.9861 24 1 0.1518 0.1570 -6.3720 25 1 0.0223 1.9043 -8.0485 26 1 2.1447 0.8295 -7.5788 27 6 1.3139 3.4723 -2.9845 28 6 1.5438 3.2485 -1.4785 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.7093 -1.3224 5.5491 35 1 -0.3020 -1.5962 4.1101 36 1 1.3627 -2.2244 4.1607 37 1 2.5119 3.4138 5.1015 38 1 3.5050 3.4058 3.6244 39 1 1.8407 4.0350 3.5744 40 1 3.9344 3.4004 -0.6982 41 1 4.4077 1.6987 -0.6074 42 1 5.5719 2.7885 -2.3740 43 1 4.4377 1.5927 -3.0377 44 1 3.7497 4.5597 -2.7601 45 1 4.4544 3.8621 -4.2378 46 1 -0.4712 3.5830 -5.9393 47 1 0.9990 4.5034 -3.1453 48 1 0.5221 2.8050 -3.3248 49 1 0.5828 3.1118 -0.9825 50 1 2.0456 4.1190 -1.0562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998160853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:10 Heat of formation + Delta-G solvation = -0.941842 kcal Electronic energy + Delta-G solvation = -31152.214005 eV Core-core repulsion = 27181.552524 eV Total energy + Delta-G solvation = -3970.661481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.48478 -41.35133 -39.01354 -37.06185 -36.02011 -34.98887 -34.03834 -33.07627 -32.62307 -31.01407 -30.74210 -28.09362 -27.17392 -25.75204 -25.13570 -24.59174 -23.64019 -22.68607 -21.46181 -21.14387 -20.21492 -18.57845 -18.20111 -17.98091 -17.38743 -16.92211 -16.77429 -16.21672 -15.82048 -15.66846 -15.31097 -15.06031 -14.97693 -14.76587 -14.56604 -14.36475 -14.27309 -14.04916 -13.85655 -13.60119 -13.53487 -13.44964 -13.18207 -13.06283 -12.98586 -12.83173 -12.72387 -12.53890 -12.42521 -12.08292 -12.00370 -11.98197 -11.87146 -11.72306 -11.36474 -11.34577 -11.11270 -10.81595 -10.42243 -9.88929 -9.51489 -8.64564 -7.84011 -5.31107 0.04783 0.99832 1.47488 1.48414 1.48801 1.57600 1.96312 2.23208 2.53396 2.89728 3.28680 3.48567 3.62708 3.67839 3.86934 4.04003 4.13459 4.14602 4.34348 4.37316 4.39386 4.47581 4.49219 4.56924 4.59963 4.66661 4.69637 4.70188 4.72488 4.80651 4.88183 4.89962 4.98096 5.03470 5.05548 5.11177 5.13989 5.19314 5.21752 5.23716 5.32559 5.43981 5.49444 5.56120 5.65804 5.72952 5.74865 6.38146 6.42669 6.55692 7.13041 7.19111 7.94441 8.37262 9.21602 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017466 B = 0.003433 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.767103 B = 8154.918391 C = 8984.876692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.099 3.901 3 N -0.594 5.594 4 C 0.591 3.409 5 O -0.554 6.554 6 C -0.096 4.096 7 N -0.471 5.471 8 C 0.194 3.806 9 C -0.055 4.055 10 O -0.198 6.198 11 C 0.037 3.963 12 C -0.064 4.064 13 C 0.174 3.826 14 H 0.080 0.920 15 C -0.100 4.100 16 C -0.127 4.127 17 C 0.152 3.848 18 N -0.602 5.602 19 C -0.264 4.264 20 H 0.069 0.931 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.962 3.038 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.267 1.267 27 C 0.200 3.800 28 C -0.120 4.120 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.033 0.967 45 H 0.042 0.958 46 H 0.248 0.752 47 H -0.008 1.008 48 H 0.038 0.962 49 H 0.046 0.954 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 -10.482 23.537 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.380 3.620 5 O -0.434 6.434 6 C -0.214 4.214 7 N -0.202 5.202 8 C -0.015 4.015 9 C -0.112 4.112 10 O -0.086 6.086 11 C -0.020 4.020 12 C -0.120 4.120 13 C 0.072 3.928 14 H 0.098 0.902 15 C -0.138 4.138 16 C -0.167 4.167 17 C 0.025 3.975 18 N -0.325 5.325 19 C -0.394 4.394 20 H 0.086 0.914 21 C -0.242 4.242 22 N -0.581 5.581 23 Si 0.790 3.210 24 H -0.212 1.212 25 H -0.225 1.225 26 H -0.192 1.192 27 C 0.074 3.926 28 C -0.159 4.159 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.010 0.990 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.760 -10.263 22.981 25.319 hybrid contribution -0.573 0.282 -0.735 0.973 sum 2.188 -9.981 22.246 24.481 Atomic orbital electron populations 1.21920 0.95671 1.02577 1.00012 1.22073 0.94996 0.80889 1.04338 1.48240 1.63364 1.15172 1.05716 1.17069 0.77250 0.85237 0.82457 1.90751 1.49607 1.15974 1.87033 1.21412 1.12067 0.93451 0.94519 1.70868 1.18060 1.13682 1.17548 1.27420 0.97540 0.91066 0.85464 1.20599 1.03178 0.84977 1.02425 1.84354 1.62994 1.22372 1.38873 1.24021 0.98012 0.93210 0.86763 1.20490 1.02263 0.84682 1.04544 1.20331 0.94449 0.94394 0.83673 0.90201 1.20526 0.94010 1.01298 0.97988 1.21263 0.99268 1.00521 0.95663 1.20863 0.86058 0.94343 0.96218 1.43850 1.02301 1.65353 1.20967 1.19499 0.99851 1.21649 0.98387 0.91379 1.25781 0.99056 0.99185 1.00201 1.70254 1.10978 1.32325 1.44531 0.85350 0.77947 0.79050 0.78643 1.21209 1.22470 1.19151 1.20595 0.88349 0.96659 0.87019 1.22089 0.98632 0.98030 0.97180 0.89712 0.93640 0.95217 0.90928 0.86482 0.87221 0.87112 0.86817 0.87678 0.88620 0.88930 0.92539 0.92891 0.90322 0.93028 0.94903 0.93933 0.94312 0.98958 0.94337 0.93561 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.73 71.98 0.70 -3.27 16 2 C 0.10 2.83 5.70 86.38 0.49 3.32 16 3 N -0.59 -20.12 2.27 -806.35 -1.83 -21.96 16 4 C 0.59 20.09 7.02 86.66 0.61 20.69 16 5 O -0.55 -20.85 12.83 -4.06 -0.05 -20.90 16 6 C -0.10 -2.73 6.48 40.41 0.26 -2.46 16 7 N -0.47 -11.37 6.67 -293.04 -1.95 -13.32 16 8 C 0.19 3.51 8.30 88.39 0.73 4.24 16 9 C -0.05 -0.37 10.51 71.23 0.75 0.37 16 10 O -0.20 -4.00 10.73 0.28 0.00 -3.99 16 11 C 0.04 0.87 7.44 25.19 0.19 1.06 16 12 C -0.06 -1.18 9.15 71.24 0.65 -0.53 16 13 C 0.17 6.71 2.17 44.16 0.10 6.80 16 14 H 0.08 3.40 7.05 -2.39 -0.02 3.39 16 15 C -0.10 -3.59 3.99 28.62 0.11 -3.48 16 16 C -0.13 -4.57 5.74 29.40 0.17 -4.40 16 17 C 0.15 6.57 5.65 87.37 0.49 7.07 16 18 N -0.60 -30.82 2.26 -698.31 -1.58 -32.40 16 19 C -0.26 -14.52 9.41 84.03 0.79 -13.73 16 20 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 21 C -0.05 -2.63 4.80 84.86 0.41 -2.23 16 22 N -0.94 -56.49 11.24 21.65 0.24 -56.24 16 23 Si 0.96 45.25 29.59 68.60 2.03 47.28 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.20 10.28 4.68 86.50 0.41 10.68 16 28 C -0.12 -5.18 4.24 30.24 0.13 -5.06 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.31 7.10 -2.39 -0.02 1.30 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 33 H 0.12 3.09 5.26 -2.39 -0.01 3.07 16 34 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.09 1.90 8.00 -2.39 -0.02 1.88 16 40 H 0.06 2.15 6.39 -2.39 -0.02 2.14 16 41 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 45 H 0.04 1.84 7.99 -2.38 -0.02 1.82 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H -0.01 -0.44 8.03 -2.39 -0.02 -0.46 16 48 H 0.04 2.18 6.48 -2.39 -0.02 2.17 16 49 H 0.05 2.02 7.97 -2.39 -0.02 2.00 16 50 H 0.05 2.46 6.62 -2.39 -0.02 2.44 16 Total: -1.00 -70.65 386.20 4.77 -65.88 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.93 Total: 16.58 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 6.99 Total: 19.08 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -5.12 Total: -123.92 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.65 4.77 -65.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998160853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.934 kcal (2) G-P(sol) polarization free energy of solvation -70.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds