Wall clock time and date at job start Tue Mar 31 2020 19:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47013 * 2 1 4 4 C 1.46897 * 111.00379 * 297.84357 * 3 2 1 5 5 C 1.53001 * 109.47048 * 288.33058 * 4 3 2 6 6 C 1.46908 * 110.99967 * 61.79628 * 3 2 1 7 7 C 1.50694 * 109.46982 * 66.04918 * 6 3 2 8 8 C 1.35134 * 125.62192 * 89.99704 * 7 6 3 9 9 C 1.40356 * 107.11892 * 179.73833 * 8 7 6 10 10 C 1.36551 * 106.71069 * 0.26522 * 9 8 7 11 11 C 1.46649 * 125.99221 * 179.97438 * 10 9 8 12 12 O 1.21702 * 120.00003 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00180 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00043 * 179.97438 * 13 11 10 15 15 H 1.09001 * 110.88908 * 328.88112 * 14 13 11 16 16 C 1.55157 * 111.00598 * 205.00277 * 14 13 11 17 17 C 1.54320 * 102.94390 * 277.43189 * 16 14 13 18 18 N 1.47026 * 107.26806 * 337.80485 * 17 16 14 19 19 C 1.36935 * 125.64690 * 178.89878 * 18 17 16 20 20 H 1.08000 * 120.00226 * 180.02562 * 19 18 17 21 21 C 1.38822 * 120.00302 * 0.02562 * 19 18 17 22 22 N 1.31614 * 119.99585 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00132 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47177 * 59.99701 * 23 21 19 25 25 H 1.48500 * 109.46915 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46936 * 299.99990 * 23 21 19 27 27 C 1.47427 * 108.70570 * 358.94012 * 18 17 16 28 28 O 1.33937 * 125.61474 * 270.19591 * 7 6 3 29 29 H 1.09004 * 109.46719 * 181.97709 * 1 2 3 30 30 H 1.08998 * 109.47163 * 301.97630 * 1 2 3 31 31 H 1.08994 * 109.46908 * 61.97894 * 1 2 3 32 32 H 1.08997 * 109.47220 * 240.00256 * 2 1 3 33 33 H 1.08999 * 109.47316 * 119.99640 * 2 1 3 34 34 H 1.09009 * 109.46750 * 48.32388 * 4 3 2 35 35 H 1.08993 * 109.47768 * 168.32410 * 4 3 2 36 36 H 1.08996 * 109.47303 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46852 * 299.99703 * 5 4 3 38 38 H 1.09001 * 109.47320 * 59.99752 * 5 4 3 39 39 H 1.08994 * 109.46906 * 306.04614 * 6 3 2 40 40 H 1.09001 * 109.46592 * 186.04628 * 6 3 2 41 41 H 1.07997 * 126.43487 * 0.02562 * 8 7 6 42 42 H 1.08004 * 126.64994 * 180.29984 * 9 8 7 43 43 H 0.97004 * 120.00220 * 0.02562 * 13 11 10 44 44 H 1.08998 * 110.71930 * 35.79190 * 16 14 13 45 45 H 1.08997 * 110.72259 * 159.06217 * 16 14 13 46 46 H 1.08995 * 109.88893 * 97.22186 * 17 16 14 47 47 H 1.09003 * 109.88178 * 218.23695 * 17 16 14 48 48 H 0.97001 * 120.00221 * 179.97438 * 22 21 19 49 49 H 1.08998 * 110.36823 * 265.29150 * 27 18 17 50 50 H 1.08994 * 110.36503 * 142.96681 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5913 2.0949 -1.2126 5 6 2.3713 1.5638 -2.4169 6 6 1.5840 2.0974 1.2087 7 6 2.2423 1.4845 2.4177 8 6 3.4294 1.8602 2.9429 9 6 3.6661 1.0407 4.0575 10 6 2.6009 0.1917 4.1538 11 6 2.4157 -0.8464 5.1730 12 8 3.2580 -1.0088 6.0363 13 7 1.3122 -1.6199 5.1543 14 6 1.1274 -2.6572 6.1721 15 1 2.0875 -3.0579 6.4974 16 6 0.2006 -3.7877 5.6522 17 6 -1.2120 -3.2160 5.8955 18 7 -1.0932 -2.1899 6.9417 19 6 -2.1197 -1.4277 7.4323 20 1 -1.9287 -0.6970 8.2042 21 6 -3.4060 -1.5944 6.9373 22 7 -3.6387 -2.4846 5.9963 23 14 -4.8061 -0.5542 7.6060 24 1 -4.5132 0.8820 7.3678 25 1 -6.0690 -0.9223 6.9170 26 1 -4.9488 -0.7949 9.0644 27 6 0.3142 -2.1167 7.3746 28 8 1.7490 0.4749 3.1467 29 1 -0.3633 -1.0271 0.0355 30 1 -0.3633 0.5442 0.8717 31 1 -0.3633 0.4828 -0.9072 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5248 1.9334 -1.3705 35 1 1.7839 3.1614 -1.0965 36 1 2.0532 2.0902 -3.3167 37 1 3.4377 1.7253 -2.2590 38 1 2.1786 0.4973 -2.5330 39 1 0.5012 2.0195 1.3058 40 1 1.8676 3.1472 1.1336 41 1 4.0726 2.6468 2.5767 42 1 4.5241 1.0752 4.7125 43 1 0.6406 -1.4902 4.4664 44 1 0.3671 -3.9649 4.5896 45 1 0.3501 -4.7030 6.2248 46 1 -1.5936 -2.7676 4.9782 47 1 -1.8815 -4.0101 6.2261 48 1 -4.5375 -2.6013 5.6507 49 1 0.4740 -2.7424 8.2527 50 1 0.5923 -1.0846 7.5875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016384852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:26 Heat of formation + Delta-G solvation = 13.789322 kcal Electronic energy + Delta-G solvation = -29778.688619 eV Core-core repulsion = 25808.665930 eV Total energy + Delta-G solvation = -3970.022690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70479 -39.42550 -38.60361 -37.21060 -33.89370 -33.12231 -32.19047 -31.80170 -31.23704 -29.36671 -28.82212 -27.32338 -25.86054 -24.50940 -24.13408 -22.50335 -21.59269 -20.46965 -20.09753 -20.04878 -19.75566 -18.18597 -16.85861 -16.81722 -16.34764 -16.02593 -15.75125 -15.59882 -14.65895 -14.55512 -14.33218 -14.20922 -13.77589 -13.55592 -13.42895 -13.35636 -12.95959 -12.90097 -12.88635 -12.45653 -12.40320 -12.27437 -11.94951 -11.83461 -11.79405 -11.70591 -11.35505 -10.98103 -10.90516 -10.84166 -10.75285 -10.43111 -10.17321 -9.99108 -9.98321 -9.92771 -9.68809 -8.87780 -8.71240 -8.58020 -8.39937 -6.83449 -5.72875 -3.05444 1.10520 2.31091 2.61780 3.36287 3.39573 3.43949 3.45058 3.46807 3.71368 4.39807 4.49305 4.62916 4.75158 4.86958 4.93078 4.98815 5.04365 5.08423 5.19102 5.19482 5.28768 5.30997 5.40563 5.43623 5.46857 5.60080 5.65366 5.73179 5.74792 5.78243 5.81281 5.81831 5.88675 5.92141 6.08936 6.16770 6.34028 6.35854 6.46376 6.47213 6.63330 6.66799 6.71511 6.87142 7.02681 7.52184 7.54357 7.77493 7.80688 8.23558 8.35285 9.20945 9.80851 10.46514 11.38981 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.003267 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.294271 B = 8567.903171 C = 9847.444644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 N -0.532 5.532 4 C 0.044 3.956 5 C -0.147 4.147 6 C 0.126 3.874 7 C 0.021 3.979 8 C -0.200 4.200 9 C -0.127 4.127 10 C -0.065 4.065 11 C 0.600 3.400 12 O -0.531 6.531 13 N -0.690 5.690 14 C 0.126 3.874 15 H 0.094 0.906 16 C -0.154 4.154 17 C 0.176 3.824 18 N -0.604 5.604 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.924 5.924 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.125 3.875 28 O -0.158 6.158 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.408 0.592 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.252 0.748 49 H 0.031 0.969 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.515 7.000 -15.612 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.083 4.083 3 N -0.257 5.257 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.002 4.002 7 C -0.032 4.032 8 C -0.220 4.220 9 C -0.148 4.148 10 C -0.118 4.118 11 C 0.386 3.614 12 O -0.410 6.410 13 N -0.339 5.339 14 C 0.021 3.979 15 H 0.112 0.888 16 C -0.192 4.192 17 C 0.051 3.949 18 N -0.330 5.330 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.002 4.002 28 O -0.054 6.054 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.124 0.876 41 H 0.171 0.829 42 H 0.176 0.824 43 H 0.243 0.757 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.048 0.952 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.073 6.700 -15.078 21.051 hybrid contribution -1.934 0.718 0.082 2.065 sum 11.139 7.417 -14.996 20.099 Atomic orbital electron populations 1.22417 0.97645 1.03268 1.01993 1.22233 0.93368 0.89484 1.03221 1.62328 1.59623 1.02715 1.00992 1.22155 0.98144 0.98265 0.89758 1.21758 1.01084 1.01237 0.96339 1.20634 0.98170 0.97045 0.84303 1.22414 0.95149 0.90499 0.95165 1.21485 0.97659 1.04425 0.98416 1.21898 0.99026 0.95207 0.98643 1.22191 0.92854 1.03217 0.93497 1.16551 0.82436 0.79821 0.82633 1.90848 1.44035 1.69532 1.36607 1.45775 1.21358 1.34988 1.31775 1.22242 0.98826 0.87708 0.89145 0.88844 1.23235 0.98401 0.97123 1.00480 1.21171 0.89613 0.91446 0.92687 1.44465 1.02216 1.42832 1.43527 1.19010 0.86353 1.13573 1.16398 0.90602 1.24770 0.97310 0.99356 0.98990 1.69937 1.20152 1.36533 1.30518 0.86207 0.81673 0.79695 0.78246 1.21264 1.21617 1.21178 1.21953 0.85867 0.98634 0.93775 1.84052 1.44169 1.43326 1.33824 0.91442 0.91989 0.92439 0.90281 0.90380 0.93753 0.90756 0.92312 0.91849 0.92612 0.91960 0.87570 0.82862 0.82396 0.75736 0.91545 0.90725 0.93639 0.93681 0.93783 0.95180 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 9.28 37.16 0.34 -1.52 16 2 C 0.04 0.43 5.74 -3.82 -0.02 0.41 16 3 N -0.53 -4.78 4.66 -236.07 -1.10 -5.88 16 4 C 0.04 0.31 5.55 -3.83 -0.02 0.29 16 5 C -0.15 -0.94 9.95 37.16 0.37 -0.57 16 6 C 0.13 1.17 5.28 -4.97 -0.03 1.14 16 7 C 0.02 0.25 5.89 -35.42 -0.21 0.04 16 8 C -0.20 -2.32 10.77 -39.89 -0.43 -2.75 16 9 C -0.13 -1.73 10.62 -39.39 -0.42 -2.15 16 10 C -0.06 -1.01 7.13 -36.80 -0.26 -1.28 16 11 C 0.60 10.61 7.79 -12.87 -0.10 10.51 16 12 O -0.53 -10.52 16.51 5.19 0.09 -10.43 16 13 N -0.69 -12.13 5.18 -53.04 -0.27 -12.40 16 14 C 0.13 2.29 3.43 -65.78 -0.23 2.06 16 15 H 0.09 1.62 7.54 -51.93 -0.39 1.22 16 16 C -0.15 -2.74 6.55 -24.90 -0.16 -2.90 16 17 C 0.18 4.10 5.36 -3.06 -0.02 4.08 16 18 N -0.60 -15.24 3.39 -170.07 -0.58 -15.82 16 19 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.12 2.68 6.93 -2.53 -0.02 2.66 16 28 O -0.16 -2.31 9.72 4.96 0.05 -2.26 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.67 6.22 -51.93 -0.32 0.35 16 31 H 0.06 0.49 6.32 -51.93 -0.33 0.16 16 32 H 0.08 0.69 6.61 -51.93 -0.34 0.35 16 33 H 0.08 0.90 6.70 -51.93 -0.35 0.55 16 34 H 0.04 0.31 5.89 -51.92 -0.31 0.01 16 35 H 0.07 0.45 7.81 -51.93 -0.41 0.04 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.38 6.71 -51.93 -0.35 0.03 16 39 H 0.06 0.60 6.02 -51.93 -0.31 0.29 16 40 H 0.11 0.76 7.86 -51.93 -0.41 0.35 16 41 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 43 H 0.41 7.09 8.42 -40.82 -0.34 6.75 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 47 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -31.49 396.91 -9.72 -41.20 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.98 Total: 5.28 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.45 Total: 3.27 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -1.38 Total: -60.18 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.13 Total: -12.69 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.49 -9.72 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016384852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.993 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds