Wall clock time and date at job start Tue Mar 31 2020 19:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47013 * 2 1 4 4 C 1.46897 * 111.00379 * 297.84357 * 3 2 1 5 5 C 1.53001 * 109.47048 * 288.33058 * 4 3 2 6 6 C 1.46908 * 110.99967 * 61.79628 * 3 2 1 7 7 C 1.50694 * 109.46982 * 66.04918 * 6 3 2 8 8 C 1.35134 * 125.62192 * 89.99704 * 7 6 3 9 9 C 1.40356 * 107.11892 * 179.73833 * 8 7 6 10 10 C 1.36551 * 106.71069 * 0.26522 * 9 8 7 11 11 C 1.46649 * 125.99221 * 179.97438 * 10 9 8 12 12 O 1.21702 * 120.00003 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00180 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00043 * 179.97438 * 13 11 10 15 15 H 1.09001 * 110.88908 * 328.88112 * 14 13 11 16 16 C 1.55157 * 111.00598 * 205.00277 * 14 13 11 17 17 C 1.54320 * 102.94390 * 277.43189 * 16 14 13 18 18 N 1.47026 * 107.26806 * 337.80485 * 17 16 14 19 19 C 1.36935 * 125.64690 * 178.89878 * 18 17 16 20 20 H 1.08000 * 120.00226 * 180.02562 * 19 18 17 21 21 C 1.38822 * 120.00302 * 0.02562 * 19 18 17 22 22 N 1.31614 * 119.99585 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00132 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47177 * 59.99701 * 23 21 19 25 25 H 1.48500 * 109.46915 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46936 * 299.99990 * 23 21 19 27 27 C 1.47427 * 108.70570 * 358.94012 * 18 17 16 28 28 O 1.33937 * 125.61474 * 270.19591 * 7 6 3 29 29 H 1.09004 * 109.46719 * 181.97709 * 1 2 3 30 30 H 1.08998 * 109.47163 * 301.97630 * 1 2 3 31 31 H 1.08994 * 109.46908 * 61.97894 * 1 2 3 32 32 H 1.08997 * 109.47220 * 240.00256 * 2 1 3 33 33 H 1.08999 * 109.47316 * 119.99640 * 2 1 3 34 34 H 1.09009 * 109.46750 * 48.32388 * 4 3 2 35 35 H 1.08993 * 109.47768 * 168.32410 * 4 3 2 36 36 H 1.08996 * 109.47303 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46852 * 299.99703 * 5 4 3 38 38 H 1.09001 * 109.47320 * 59.99752 * 5 4 3 39 39 H 1.08994 * 109.46906 * 306.04614 * 6 3 2 40 40 H 1.09001 * 109.46592 * 186.04628 * 6 3 2 41 41 H 1.07997 * 126.43487 * 0.02562 * 8 7 6 42 42 H 1.08004 * 126.64994 * 180.29984 * 9 8 7 43 43 H 0.97004 * 120.00220 * 0.02562 * 13 11 10 44 44 H 1.08998 * 110.71930 * 35.79190 * 16 14 13 45 45 H 1.08997 * 110.72259 * 159.06217 * 16 14 13 46 46 H 1.08995 * 109.88893 * 97.22186 * 17 16 14 47 47 H 1.09003 * 109.88178 * 218.23695 * 17 16 14 48 48 H 0.97001 * 120.00221 * 179.97438 * 22 21 19 49 49 H 1.08998 * 110.36823 * 265.29150 * 27 18 17 50 50 H 1.08994 * 110.36503 * 142.96681 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5913 2.0949 -1.2126 5 6 2.3713 1.5638 -2.4169 6 6 1.5840 2.0974 1.2087 7 6 2.2423 1.4845 2.4177 8 6 3.4294 1.8602 2.9429 9 6 3.6661 1.0407 4.0575 10 6 2.6009 0.1917 4.1538 11 6 2.4157 -0.8464 5.1730 12 8 3.2580 -1.0088 6.0363 13 7 1.3122 -1.6199 5.1543 14 6 1.1274 -2.6572 6.1721 15 1 2.0875 -3.0579 6.4974 16 6 0.2006 -3.7877 5.6522 17 6 -1.2120 -3.2160 5.8955 18 7 -1.0932 -2.1899 6.9417 19 6 -2.1197 -1.4277 7.4323 20 1 -1.9287 -0.6970 8.2042 21 6 -3.4060 -1.5944 6.9373 22 7 -3.6387 -2.4846 5.9963 23 14 -4.8061 -0.5542 7.6060 24 1 -4.5132 0.8820 7.3678 25 1 -6.0690 -0.9223 6.9170 26 1 -4.9488 -0.7949 9.0644 27 6 0.3142 -2.1167 7.3746 28 8 1.7490 0.4749 3.1467 29 1 -0.3633 -1.0271 0.0355 30 1 -0.3633 0.5442 0.8717 31 1 -0.3633 0.4828 -0.9072 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5248 1.9334 -1.3705 35 1 1.7839 3.1614 -1.0965 36 1 2.0532 2.0902 -3.3167 37 1 3.4377 1.7253 -2.2590 38 1 2.1786 0.4973 -2.5330 39 1 0.5012 2.0195 1.3058 40 1 1.8676 3.1472 1.1336 41 1 4.0726 2.6468 2.5767 42 1 4.5241 1.0752 4.7125 43 1 0.6406 -1.4902 4.4664 44 1 0.3671 -3.9649 4.5896 45 1 0.3501 -4.7030 6.2248 46 1 -1.5936 -2.7676 4.9782 47 1 -1.8815 -4.0101 6.2261 48 1 -4.5375 -2.6013 5.6507 49 1 0.4740 -2.7424 8.2527 50 1 0.5923 -1.0846 7.5875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016384852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:25 Heat of formation + Delta-G solvation = -6.838092 kcal Electronic energy + Delta-G solvation = -29779.583091 eV Core-core repulsion = 25808.665930 eV Total energy + Delta-G solvation = -3970.917161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.74822 -40.86257 -39.33555 -38.86210 -35.54448 -34.24448 -33.66616 -32.84514 -32.05975 -31.09846 -29.90856 -28.89744 -26.92908 -26.29433 -24.90351 -23.64707 -22.59119 -22.02676 -21.61343 -21.22966 -20.78536 -19.49436 -18.77251 -17.76912 -17.51563 -17.00510 -16.77237 -16.67101 -16.56512 -15.86735 -15.68306 -15.48593 -15.14683 -15.10781 -14.26271 -14.13593 -14.06432 -13.99270 -13.93101 -13.84045 -13.64191 -13.59922 -13.04479 -12.94939 -12.92357 -12.81305 -12.53039 -12.35882 -12.35772 -12.16677 -12.08355 -11.99816 -11.84447 -11.63352 -11.52176 -11.37576 -11.00555 -10.73916 -10.26199 -9.61509 -9.29478 -8.88522 -7.86628 -5.21026 -0.02661 1.32314 1.43717 1.46187 1.52608 1.56275 2.08040 2.17728 2.47607 2.98797 3.32008 3.48164 3.64120 3.71519 3.85839 3.95838 3.98733 4.03264 4.12572 4.22809 4.27646 4.32330 4.39712 4.45928 4.54586 4.60389 4.64618 4.69219 4.69761 4.80925 4.84429 4.85413 4.89971 4.95258 4.98390 5.00258 5.10496 5.15317 5.23763 5.40261 5.41908 5.44210 5.45043 5.63715 5.74021 5.85066 5.96530 6.06646 6.17833 6.42139 6.96659 7.09688 7.75109 8.39331 9.23081 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.003267 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.294271 B = 8567.903171 C = 9847.444644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.043 3.957 5 C -0.144 4.144 6 C 0.125 3.875 7 C 0.025 3.975 8 C -0.198 4.198 9 C -0.117 4.117 10 C -0.102 4.102 11 C 0.601 3.399 12 O -0.558 6.558 13 N -0.692 5.692 14 C 0.138 3.862 15 H 0.111 0.889 16 C -0.134 4.134 17 C 0.184 3.816 18 N -0.621 5.621 19 C -0.244 4.244 20 H 0.073 0.927 21 C -0.059 4.059 22 N -0.946 5.946 23 Si 0.975 3.025 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.122 3.878 28 O -0.173 6.173 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.135 0.865 41 H 0.185 0.815 42 H 0.167 0.833 43 H 0.407 0.593 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.017 0.983 47 H 0.012 0.988 48 H 0.247 0.753 49 H 0.039 0.961 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.589 8.389 -17.003 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.080 4.080 3 N -0.259 5.259 4 C -0.084 4.084 5 C -0.201 4.201 6 C -0.002 4.002 7 C -0.028 4.028 8 C -0.217 4.217 9 C -0.138 4.138 10 C -0.154 4.154 11 C 0.389 3.611 12 O -0.439 6.439 13 N -0.340 5.340 14 C 0.033 3.967 15 H 0.129 0.871 16 C -0.172 4.172 17 C 0.060 3.940 18 N -0.348 5.348 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.253 4.253 22 N -0.594 5.594 23 Si 0.803 3.197 24 H -0.207 1.207 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.004 4.004 28 O -0.069 6.069 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.153 0.847 41 H 0.203 0.797 42 H 0.185 0.815 43 H 0.242 0.758 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.035 0.965 47 H 0.030 0.970 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 14.172 8.092 -16.471 23.187 hybrid contribution -2.238 0.361 0.460 2.313 sum 11.934 8.453 -16.011 21.685 Atomic orbital electron populations 1.22367 0.97758 1.02764 1.01932 1.22152 0.93162 0.90140 1.02540 1.62350 1.59617 1.02387 1.01563 1.22258 0.98248 0.98968 0.88929 1.21741 1.00730 1.01031 0.96630 1.20838 0.97750 0.98218 0.83430 1.23119 0.95306 0.89177 0.95177 1.21825 0.97775 1.04680 0.97421 1.22195 0.98343 0.94379 0.98881 1.21893 0.94427 1.04455 0.94630 1.16777 0.81813 0.79822 0.82698 1.90815 1.44770 1.70493 1.37856 1.45771 1.21518 1.35135 1.31545 1.22113 0.98977 0.87643 0.87986 0.87073 1.23097 0.94254 0.97371 1.02487 1.20944 0.92393 0.89950 0.90756 1.44696 1.03249 1.42925 1.43902 1.19318 0.87528 1.13923 1.16486 0.90889 1.25544 0.99492 1.00706 0.99532 1.70142 1.20135 1.37705 1.31443 0.85216 0.78526 0.78260 0.77697 1.20660 1.21672 1.20550 1.22082 0.84623 0.98131 0.95610 1.84040 1.44508 1.44375 1.33979 0.92114 0.93488 0.91054 0.89346 0.92637 0.93677 0.89152 0.90920 0.92256 0.93214 0.92440 0.84705 0.79722 0.81524 0.75808 0.89103 0.88497 0.96519 0.96988 0.94336 0.94304 0.95413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 9.28 71.98 0.67 -2.88 16 2 C 0.05 0.89 5.74 86.30 0.50 1.38 16 3 N -0.53 -8.54 4.66 -900.80 -4.20 -12.74 16 4 C 0.04 0.49 5.55 86.30 0.48 0.97 16 5 C -0.14 -1.50 9.95 71.98 0.72 -0.79 16 6 C 0.12 2.06 5.28 85.55 0.45 2.51 16 7 C 0.02 0.56 5.89 24.97 0.15 0.71 16 8 C -0.20 -4.13 10.77 22.07 0.24 -3.89 16 9 C -0.12 -3.06 10.62 22.39 0.24 -2.82 16 10 C -0.10 -3.18 7.13 24.07 0.17 -3.01 16 11 C 0.60 21.41 7.79 86.44 0.67 22.08 16 12 O -0.56 -22.12 16.51 -4.35 -0.07 -22.19 16 13 N -0.69 -24.44 5.18 -439.93 -2.28 -26.72 16 14 C 0.14 4.94 3.43 46.38 0.16 5.10 16 15 H 0.11 3.67 7.54 -2.39 -0.02 3.65 16 16 C -0.13 -4.63 6.55 31.78 0.21 -4.42 16 17 C 0.18 8.81 5.36 86.73 0.47 9.27 16 18 N -0.62 -32.04 3.39 -691.98 -2.35 -34.39 16 19 C -0.24 -13.89 10.28 84.04 0.86 -13.02 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.06 -3.38 5.49 84.87 0.47 -2.92 16 22 N -0.95 -55.99 10.31 21.65 0.22 -55.77 16 23 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 C 0.12 5.28 6.93 86.86 0.60 5.88 16 28 O -0.17 -5.03 9.72 -5.16 -0.05 -5.08 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.05 1.02 6.22 -2.39 -0.01 1.00 16 31 H 0.07 1.12 6.32 -2.39 -0.02 1.10 16 32 H 0.09 1.45 6.61 -2.39 -0.02 1.43 16 33 H 0.06 1.28 6.70 -2.39 -0.02 1.27 16 34 H 0.05 0.53 5.89 -2.38 -0.01 0.51 16 35 H 0.09 0.78 7.81 -2.39 -0.02 0.76 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.05 0.58 6.71 -2.39 -0.02 0.56 16 39 H 0.06 1.03 6.02 -2.39 -0.01 1.02 16 40 H 0.14 1.46 7.86 -2.39 -0.02 1.44 16 41 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.17 3.96 8.06 -2.91 -0.02 3.93 16 43 H 0.41 14.47 8.42 -92.71 -0.78 13.69 16 44 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 46 H 0.02 0.88 7.38 -2.39 -0.02 0.86 16 47 H 0.01 0.64 7.51 -2.39 -0.02 0.62 16 48 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 49 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -69.51 396.91 0.51 -69.00 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.17 Total: 25.61 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 7.04 Total: 14.14 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -8.60 Total: -129.62 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.12 Total: -27.27 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -69.51 0.51 -69.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016384852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.164 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds