Wall clock time and date at job start Tue Mar 31 2020 19:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.46986 * 2 1 4 4 C 1.46896 * 110.99962 * 297.85443 * 3 2 1 5 5 C 1.53007 * 109.47006 * 288.32583 * 4 3 2 6 6 C 1.46899 * 110.99749 * 61.80177 * 3 2 1 7 7 C 1.50708 * 109.46949 * 66.05273 * 6 3 2 8 8 C 1.35125 * 125.61769 * 90.00136 * 7 6 3 9 9 C 1.40369 * 107.11386 * 180.22886 * 8 7 6 10 10 C 1.36552 * 106.70443 * 359.56950 * 9 8 7 11 11 C 1.46657 * 125.98333 * 180.15269 * 10 9 8 12 12 O 1.21689 * 120.00319 * 0.30209 * 11 10 9 13 13 N 1.34778 * 119.99439 * 180.29545 * 11 10 9 14 14 C 1.46509 * 119.99773 * 180.02562 * 13 11 10 15 15 H 1.08993 * 110.88481 * 31.11889 * 14 13 11 16 16 C 1.55156 * 111.00378 * 155.00079 * 14 13 11 17 17 C 1.54322 * 102.93906 * 153.57507 * 16 14 13 18 18 N 1.47016 * 107.27186 * 337.80472 * 17 16 14 19 19 C 1.36945 * 125.64702 * 178.96347 * 18 17 16 20 20 H 1.07997 * 120.00099 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99939 * 359.97438 * 19 18 17 22 22 N 1.31622 * 120.00162 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00161 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47190 * 60.00084 * 23 21 19 25 25 H 1.48498 * 109.47328 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47200 * 300.00176 * 23 21 19 27 27 C 1.47422 * 108.70627 * 358.94519 * 18 17 16 28 28 O 1.33933 * 125.61132 * 269.95553 * 7 6 3 29 29 H 1.08994 * 109.47462 * 301.98150 * 1 2 3 30 30 H 1.09002 * 109.47464 * 61.98903 * 1 2 3 31 31 H 1.09006 * 109.46937 * 181.98084 * 1 2 3 32 32 H 1.08996 * 109.47584 * 240.00141 * 2 1 3 33 33 H 1.08996 * 109.47459 * 119.99738 * 2 1 3 34 34 H 1.09001 * 109.47653 * 48.32411 * 4 3 2 35 35 H 1.09001 * 109.47276 * 168.32945 * 4 3 2 36 36 H 1.09001 * 109.46774 * 300.00366 * 5 4 3 37 37 H 1.08993 * 109.47031 * 59.99936 * 5 4 3 38 38 H 1.09000 * 109.47233 * 180.02562 * 5 4 3 39 39 H 1.08998 * 109.47785 * 306.04588 * 6 3 2 40 40 H 1.09011 * 109.47314 * 186.04540 * 6 3 2 41 41 H 1.07992 * 126.44675 * 359.95852 * 8 7 6 42 42 H 1.07995 * 126.64794 * 179.73670 * 9 8 7 43 43 H 0.96999 * 120.00430 * 0.02562 * 13 11 10 44 44 H 1.08999 * 110.71822 * 271.93679 * 16 14 13 45 45 H 1.09004 * 110.72131 * 35.03482 * 16 14 13 46 46 H 1.08998 * 109.88153 * 97.22784 * 17 16 14 47 47 H 1.09004 * 109.88059 * 218.39045 * 17 16 14 48 48 H 0.97001 * 120.00127 * 179.97438 * 22 21 19 49 49 H 1.09003 * 110.36250 * 265.28981 * 27 18 17 50 50 H 1.08996 * 110.36875 * 142.96922 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5910 2.0949 -1.2125 5 6 2.3709 1.5639 -2.4170 6 6 1.5841 2.0973 1.2087 7 6 2.2426 1.4843 2.4177 8 6 3.4296 1.8602 2.9427 9 6 3.6719 1.0330 4.0506 10 6 2.6024 0.1901 4.1523 11 6 2.4188 -0.8501 5.1698 12 8 3.2643 -1.0168 6.0290 13 7 1.3136 -1.6213 5.1531 14 6 1.1299 -2.6600 6.1698 15 1 1.5969 -2.3696 7.1109 16 6 -0.3747 -2.9810 6.3714 17 6 -0.3523 -4.4392 6.8760 18 7 0.9216 -5.0315 6.4428 19 6 1.3390 -6.3087 6.7077 20 1 2.2963 -6.6505 6.3430 21 6 0.5315 -7.1638 7.4450 22 7 -0.6350 -6.7470 7.8900 23 14 1.1010 -8.9056 7.8070 24 1 2.3717 -8.8616 8.5743 25 1 0.0654 -9.6092 8.6056 26 1 1.3191 -9.6307 6.5296 27 6 1.6753 -4.0231 5.6757 28 8 1.7473 0.4777 3.1493 29 1 -0.3634 0.5443 0.8716 30 1 -0.3634 0.4826 -0.9073 31 1 -0.3633 -1.0271 0.0355 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5246 1.9334 -1.3704 35 1 1.7837 3.1615 -1.0964 36 1 3.4373 1.7254 -2.2591 37 1 2.1782 0.4974 -2.5331 38 1 2.0532 2.0909 -3.3167 39 1 0.5012 2.0195 1.3061 40 1 1.8676 3.1472 1.1338 41 1 4.0732 2.6461 2.5761 42 1 4.5353 1.0600 4.6986 43 1 0.6398 -1.4886 4.4681 44 1 -0.8130 -2.3207 7.1197 45 1 -0.9151 -2.9048 5.4278 46 1 -0.4182 -4.4561 7.9638 47 1 -1.1850 -4.9940 6.4434 48 1 -1.1994 -7.3447 8.4049 49 1 1.4893 -4.1417 4.6083 50 1 2.7414 -4.1044 5.8873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016384853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:29 Heat of formation + Delta-G solvation = 14.732187 kcal Electronic energy + Delta-G solvation = -29108.294256 eV Core-core repulsion = 25138.312453 eV Total energy + Delta-G solvation = -3969.981804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.86258 -39.49308 -38.73272 -37.22375 -34.18759 -33.27873 -32.30514 -31.88253 -31.38614 -29.41036 -28.91026 -27.25499 -25.93773 -24.56022 -24.18668 -22.46865 -21.73467 -20.54529 -20.37396 -20.17169 -19.90136 -18.25745 -16.99780 -16.87946 -16.47367 -16.09804 -15.92891 -15.66454 -14.74425 -14.62052 -14.43915 -14.24034 -14.04281 -13.58326 -13.47996 -13.36249 -13.11446 -13.02675 -12.78830 -12.54106 -12.43505 -12.39884 -12.23566 -11.94781 -11.83454 -11.80761 -11.47365 -11.04108 -10.97559 -10.92163 -10.74777 -10.46523 -10.14428 -10.13511 -9.99038 -9.91607 -9.69874 -8.95728 -8.80233 -8.60289 -8.54377 -6.83881 -5.70608 -3.04327 0.95219 2.16977 2.45230 3.23850 3.28299 3.43147 3.46948 3.48479 3.57977 4.24426 4.50382 4.52007 4.59575 4.74023 4.79697 4.84861 4.89822 4.91889 5.05169 5.08099 5.15914 5.26510 5.29584 5.43542 5.49708 5.51950 5.59471 5.59574 5.64858 5.69494 5.72197 5.76134 5.77144 5.79448 5.94822 6.15086 6.22135 6.29356 6.40935 6.51008 6.53470 6.58935 6.66638 6.74601 6.96076 7.53063 7.57491 7.62705 7.81572 8.20173 8.26562 9.22392 9.82162 10.46949 11.41275 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.002312 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.321672 B =12107.724880 C =12903.735572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.045 3.955 5 C -0.148 4.148 6 C 0.127 3.873 7 C 0.018 3.982 8 C -0.198 4.198 9 C -0.124 4.124 10 C -0.067 4.067 11 C 0.599 3.401 12 O -0.519 6.519 13 N -0.704 5.704 14 C 0.125 3.875 15 H 0.100 0.900 16 C -0.149 4.149 17 C 0.180 3.820 18 N -0.603 5.603 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.924 5.924 23 Si 0.914 3.086 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.129 3.871 28 O -0.162 6.162 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.402 0.598 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.047 0.953 48 H 0.253 0.747 49 H 0.020 0.980 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.808 22.301 -18.236 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.082 4.082 5 C -0.205 4.205 6 C 0.000 4.000 7 C -0.035 4.035 8 C -0.218 4.218 9 C -0.145 4.145 10 C -0.120 4.120 11 C 0.384 3.616 12 O -0.396 6.396 13 N -0.353 5.353 14 C 0.021 3.979 15 H 0.118 0.882 16 C -0.188 4.188 17 C 0.054 3.946 18 N -0.330 5.330 19 C -0.355 4.355 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.002 3.998 28 O -0.058 6.058 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.172 0.828 42 H 0.177 0.823 43 H 0.236 0.764 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.540 21.787 -17.531 28.079 hybrid contribution -0.804 -0.777 -0.121 1.124 sum 1.736 21.010 -17.652 27.496 Atomic orbital electron populations 1.22414 0.97849 1.03141 1.01839 1.22245 0.93220 0.89465 1.03490 1.62311 1.59676 1.02703 1.00974 1.22156 0.98063 0.98254 0.89756 1.21765 1.01167 1.01283 0.96302 1.20621 0.97886 0.97110 0.84354 1.22420 0.95423 0.90472 0.95142 1.21518 0.97587 1.04267 0.98387 1.21953 0.98905 0.94988 0.98659 1.22220 0.92889 1.03167 0.93710 1.16585 0.82592 0.79682 0.82729 1.90898 1.42829 1.69515 1.36401 1.45943 1.21659 1.35254 1.32456 1.22421 0.97552 0.86864 0.91102 0.88178 1.23195 0.93743 1.00877 1.00995 1.21152 0.88973 0.85763 0.98666 1.44381 1.17099 1.09644 1.61906 1.19029 1.01832 0.86241 1.28429 0.90395 1.24807 0.96735 0.98625 1.00306 1.69936 1.10869 1.35152 1.41211 0.86163 0.77504 0.84000 0.77887 1.21095 1.21595 1.21170 1.21823 0.95956 0.87412 0.94641 1.84005 1.44130 1.43637 1.34033 0.92230 0.92379 0.91459 0.90123 0.90286 0.93819 0.90742 0.91781 0.92561 0.92259 0.92186 0.87556 0.82776 0.82266 0.76405 0.91494 0.92007 0.93129 0.93515 0.93673 0.96199 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 9.28 37.16 0.34 -1.06 16 2 C 0.04 0.35 5.74 -3.82 -0.02 0.33 16 3 N -0.53 -3.93 4.66 -236.07 -1.10 -5.03 16 4 C 0.04 0.25 5.55 -3.82 -0.02 0.23 16 5 C -0.15 -0.79 9.95 37.16 0.37 -0.42 16 6 C 0.13 0.90 5.28 -4.97 -0.03 0.87 16 7 C 0.02 0.18 5.88 -35.41 -0.21 -0.03 16 8 C -0.20 -1.96 10.77 -39.89 -0.43 -2.39 16 9 C -0.12 -1.51 10.62 -39.39 -0.42 -1.93 16 10 C -0.07 -0.92 7.13 -36.79 -0.26 -1.18 16 11 C 0.60 9.73 7.79 -12.86 -0.10 9.63 16 12 O -0.52 -10.16 16.50 5.20 0.09 -10.07 16 13 N -0.70 -10.82 5.19 -53.04 -0.28 -11.09 16 14 C 0.13 2.32 3.42 -65.78 -0.23 2.10 16 15 H 0.10 2.02 7.54 -51.93 -0.39 1.63 16 16 C -0.15 -2.71 6.60 -24.90 -0.16 -2.88 16 17 C 0.18 4.33 5.37 -3.07 -0.02 4.32 16 18 N -0.60 -15.75 3.39 -170.08 -0.58 -16.33 16 19 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 23 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.13 2.83 6.93 -2.53 -0.02 2.81 16 28 O -0.16 -1.92 9.73 5.00 0.05 -1.87 16 29 H 0.06 0.45 6.22 -51.93 -0.32 0.13 16 30 H 0.06 0.37 6.32 -51.93 -0.33 0.04 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.62 6.61 -51.93 -0.34 0.28 16 33 H 0.08 0.80 6.71 -51.93 -0.35 0.46 16 34 H 0.04 0.23 5.89 -51.93 -0.31 -0.07 16 35 H 0.07 0.33 7.82 -51.93 -0.41 -0.07 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.33 6.71 -51.93 -0.35 -0.02 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.40 6.02 -51.93 -0.31 0.09 16 40 H 0.11 0.54 7.87 -51.92 -0.41 0.13 16 41 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.40 5.21 8.32 -40.82 -0.34 4.87 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.00 8.00 -51.93 -0.42 0.59 16 46 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 47 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -32.49 396.75 -9.71 -42.20 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.97 Total: 2.08 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.45 Total: 3.41 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -1.38 Total: -59.12 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.13 Total: -11.94 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.49 -9.71 -42.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016384853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.936 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds