Wall clock time and date at job start Tue Mar 31 2020 19:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.46986 * 2 1 4 4 C 1.46896 * 110.99962 * 297.85443 * 3 2 1 5 5 C 1.53007 * 109.47006 * 288.32583 * 4 3 2 6 6 C 1.46899 * 110.99749 * 61.80177 * 3 2 1 7 7 C 1.50708 * 109.46949 * 66.05273 * 6 3 2 8 8 C 1.35125 * 125.61769 * 90.00136 * 7 6 3 9 9 C 1.40369 * 107.11386 * 180.22886 * 8 7 6 10 10 C 1.36552 * 106.70443 * 359.56950 * 9 8 7 11 11 C 1.46657 * 125.98333 * 180.15269 * 10 9 8 12 12 O 1.21689 * 120.00319 * 0.30209 * 11 10 9 13 13 N 1.34778 * 119.99439 * 180.29545 * 11 10 9 14 14 C 1.46509 * 119.99773 * 180.02562 * 13 11 10 15 15 H 1.08993 * 110.88481 * 31.11889 * 14 13 11 16 16 C 1.55156 * 111.00378 * 155.00079 * 14 13 11 17 17 C 1.54322 * 102.93906 * 153.57507 * 16 14 13 18 18 N 1.47016 * 107.27186 * 337.80472 * 17 16 14 19 19 C 1.36945 * 125.64702 * 178.96347 * 18 17 16 20 20 H 1.07997 * 120.00099 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99939 * 359.97438 * 19 18 17 22 22 N 1.31622 * 120.00162 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00161 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47190 * 60.00084 * 23 21 19 25 25 H 1.48498 * 109.47328 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47200 * 300.00176 * 23 21 19 27 27 C 1.47422 * 108.70627 * 358.94519 * 18 17 16 28 28 O 1.33933 * 125.61132 * 269.95553 * 7 6 3 29 29 H 1.08994 * 109.47462 * 301.98150 * 1 2 3 30 30 H 1.09002 * 109.47464 * 61.98903 * 1 2 3 31 31 H 1.09006 * 109.46937 * 181.98084 * 1 2 3 32 32 H 1.08996 * 109.47584 * 240.00141 * 2 1 3 33 33 H 1.08996 * 109.47459 * 119.99738 * 2 1 3 34 34 H 1.09001 * 109.47653 * 48.32411 * 4 3 2 35 35 H 1.09001 * 109.47276 * 168.32945 * 4 3 2 36 36 H 1.09001 * 109.46774 * 300.00366 * 5 4 3 37 37 H 1.08993 * 109.47031 * 59.99936 * 5 4 3 38 38 H 1.09000 * 109.47233 * 180.02562 * 5 4 3 39 39 H 1.08998 * 109.47785 * 306.04588 * 6 3 2 40 40 H 1.09011 * 109.47314 * 186.04540 * 6 3 2 41 41 H 1.07992 * 126.44675 * 359.95852 * 8 7 6 42 42 H 1.07995 * 126.64794 * 179.73670 * 9 8 7 43 43 H 0.96999 * 120.00430 * 0.02562 * 13 11 10 44 44 H 1.08999 * 110.71822 * 271.93679 * 16 14 13 45 45 H 1.09004 * 110.72131 * 35.03482 * 16 14 13 46 46 H 1.08998 * 109.88153 * 97.22784 * 17 16 14 47 47 H 1.09004 * 109.88059 * 218.39045 * 17 16 14 48 48 H 0.97001 * 120.00127 * 179.97438 * 22 21 19 49 49 H 1.09003 * 110.36250 * 265.28981 * 27 18 17 50 50 H 1.08996 * 110.36875 * 142.96922 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5910 2.0949 -1.2125 5 6 2.3709 1.5639 -2.4170 6 6 1.5841 2.0973 1.2087 7 6 2.2426 1.4843 2.4177 8 6 3.4296 1.8602 2.9427 9 6 3.6719 1.0330 4.0506 10 6 2.6024 0.1901 4.1523 11 6 2.4188 -0.8501 5.1698 12 8 3.2643 -1.0168 6.0290 13 7 1.3136 -1.6213 5.1531 14 6 1.1299 -2.6600 6.1698 15 1 1.5969 -2.3696 7.1109 16 6 -0.3747 -2.9810 6.3714 17 6 -0.3523 -4.4392 6.8760 18 7 0.9216 -5.0315 6.4428 19 6 1.3390 -6.3087 6.7077 20 1 2.2963 -6.6505 6.3430 21 6 0.5315 -7.1638 7.4450 22 7 -0.6350 -6.7470 7.8900 23 14 1.1010 -8.9056 7.8070 24 1 2.3717 -8.8616 8.5743 25 1 0.0654 -9.6092 8.6056 26 1 1.3191 -9.6307 6.5296 27 6 1.6753 -4.0231 5.6757 28 8 1.7473 0.4777 3.1493 29 1 -0.3634 0.5443 0.8716 30 1 -0.3634 0.4826 -0.9073 31 1 -0.3633 -1.0271 0.0355 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5246 1.9334 -1.3704 35 1 1.7837 3.1615 -1.0964 36 1 3.4373 1.7254 -2.2591 37 1 2.1782 0.4974 -2.5331 38 1 2.0532 2.0909 -3.3167 39 1 0.5012 2.0195 1.3061 40 1 1.8676 3.1472 1.1338 41 1 4.0732 2.6461 2.5761 42 1 4.5353 1.0600 4.6986 43 1 0.6398 -1.4886 4.4681 44 1 -0.8130 -2.3207 7.1197 45 1 -0.9151 -2.9048 5.4278 46 1 -0.4182 -4.4561 7.9638 47 1 -1.1850 -4.9940 6.4434 48 1 -1.1994 -7.3447 8.4049 49 1 1.4893 -4.1417 4.6083 50 1 2.7414 -4.1044 5.8873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016384853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:28 Heat of formation + Delta-G solvation = -7.136779 kcal Electronic energy + Delta-G solvation = -29109.242566 eV Core-core repulsion = 25138.312453 eV Total energy + Delta-G solvation = -3970.930113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.74995 -40.86020 -39.31447 -38.91141 -35.77993 -34.24709 -33.78017 -32.85186 -32.03998 -31.11026 -29.94580 -28.79122 -26.96250 -26.21690 -24.85897 -23.54811 -22.59817 -22.12048 -21.85586 -21.29598 -20.77074 -19.50236 -18.81937 -17.76428 -17.53655 -16.97922 -16.79348 -16.67184 -16.52738 -16.05121 -15.65950 -15.53759 -15.12953 -14.82000 -14.24394 -14.22517 -14.12417 -13.98605 -13.96957 -13.90873 -13.73467 -13.61558 -13.02312 -12.98728 -12.92015 -12.76606 -12.52698 -12.47575 -12.33630 -12.19972 -12.09274 -11.97603 -11.84038 -11.63443 -11.50359 -11.41689 -11.00934 -10.73175 -10.31598 -9.61104 -9.25793 -8.94866 -7.87980 -5.24623 -0.04198 1.31145 1.44772 1.48577 1.50949 1.55042 2.04180 2.09003 2.49147 3.01453 3.30411 3.46591 3.62205 3.71406 3.90174 3.95481 3.99212 4.01235 4.14148 4.16148 4.25305 4.34711 4.42071 4.49482 4.52932 4.56875 4.61534 4.66133 4.71825 4.82247 4.82458 4.86613 4.90648 4.93906 4.99613 5.00965 5.12638 5.16963 5.26372 5.36286 5.40787 5.41749 5.46282 5.60542 5.70638 5.83279 6.00152 6.09099 6.16158 6.40793 6.96505 7.07190 7.71836 8.35369 9.21975 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.002312 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.321672 B =12107.724880 C =12903.735572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.045 3.955 3 N -0.540 5.540 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.127 3.873 7 C 0.030 3.970 8 C -0.200 4.200 9 C -0.120 4.120 10 C -0.097 4.097 11 C 0.601 3.399 12 O -0.560 6.560 13 N -0.692 5.692 14 C 0.144 3.856 15 H 0.083 0.917 16 C -0.128 4.128 17 C 0.185 3.815 18 N -0.625 5.625 19 C -0.249 4.249 20 H 0.078 0.922 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.276 1.276 27 C 0.128 3.872 28 O -0.165 6.165 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.135 0.865 41 H 0.182 0.818 42 H 0.161 0.839 43 H 0.416 0.584 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.017 0.983 47 H 0.019 0.981 48 H 0.249 0.751 49 H 0.030 0.970 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 24.466 -20.374 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.083 4.083 3 N -0.265 5.265 4 C -0.081 4.081 5 C -0.204 4.204 6 C 0.000 4.000 7 C -0.022 4.022 8 C -0.220 4.220 9 C -0.141 4.141 10 C -0.149 4.149 11 C 0.389 3.611 12 O -0.441 6.441 13 N -0.342 5.342 14 C 0.038 3.962 15 H 0.101 0.899 16 C -0.167 4.167 17 C 0.060 3.940 18 N -0.352 5.352 19 C -0.378 4.378 20 H 0.096 0.904 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.809 3.191 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.202 1.202 27 C 0.001 3.999 28 O -0.062 6.062 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.152 0.848 41 H 0.200 0.800 42 H 0.179 0.821 43 H 0.253 0.747 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.035 0.965 47 H 0.037 0.963 48 H 0.059 0.941 49 H 0.048 0.952 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.409 23.984 -19.715 31.140 hybrid contribution -0.718 -1.364 0.419 1.597 sum 1.691 22.620 -19.296 29.780 Atomic orbital electron populations 1.22359 0.97134 1.02882 1.02322 1.22158 0.93759 0.90057 1.02333 1.62300 1.59998 1.02418 1.01778 1.22231 0.98293 0.98908 0.88715 1.21757 1.00709 1.00960 0.96962 1.20855 0.98146 0.98074 0.82965 1.23124 0.95248 0.88889 0.94978 1.21823 0.98029 1.04614 0.97501 1.22208 0.98294 0.94568 0.99008 1.21662 0.94404 1.04043 0.94817 1.16850 0.81819 0.79780 0.82681 1.90870 1.44106 1.70868 1.38265 1.45680 1.22134 1.34265 1.32112 1.21933 0.97263 0.85945 0.91015 0.89867 1.23011 0.93806 0.96975 1.02870 1.20945 0.87448 0.89047 0.96596 1.44662 1.18302 1.09867 1.62365 1.19385 1.02036 0.87722 1.28613 0.90431 1.25665 0.96967 1.02589 1.00365 1.70147 1.11736 1.36178 1.41627 0.85119 0.76993 0.79166 0.77836 1.20505 1.21598 1.20183 1.21917 0.94828 0.88471 0.94647 1.83993 1.43971 1.44393 1.33801 0.92393 0.91198 0.92098 0.90093 0.92663 0.93275 0.89073 0.92569 0.93406 0.90953 0.91441 0.84760 0.80026 0.82128 0.74684 0.89032 0.89225 0.96513 0.96308 0.94137 0.95215 0.95301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 9.28 71.98 0.67 -1.71 16 2 C 0.04 0.66 5.74 86.30 0.50 1.16 16 3 N -0.54 -6.53 4.66 -900.77 -4.20 -10.73 16 4 C 0.05 0.36 5.55 86.31 0.48 0.84 16 5 C -0.15 -1.24 9.95 71.98 0.72 -0.52 16 6 C 0.13 1.36 5.28 85.56 0.45 1.81 16 7 C 0.03 0.52 5.88 24.97 0.15 0.67 16 8 C -0.20 -3.46 10.77 22.07 0.24 -3.22 16 9 C -0.12 -2.78 10.62 22.39 0.24 -2.54 16 10 C -0.10 -2.58 7.13 24.08 0.17 -2.40 16 11 C 0.60 19.52 7.79 86.44 0.67 20.19 16 12 O -0.56 -22.44 16.50 -4.31 -0.07 -22.51 16 13 N -0.69 -20.79 5.19 -439.93 -2.28 -23.08 16 14 C 0.14 5.34 3.42 46.38 0.16 5.50 16 15 H 0.08 3.42 7.54 -2.39 -0.02 3.40 16 16 C -0.13 -4.54 6.60 31.78 0.21 -4.33 16 17 C 0.18 9.16 5.37 86.73 0.47 9.62 16 18 N -0.62 -33.52 3.39 -692.02 -2.35 -35.87 16 19 C -0.25 -14.53 10.28 84.03 0.86 -13.67 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 22 N -0.95 -57.50 10.31 21.65 0.22 -57.27 16 23 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 C 0.13 5.70 6.93 86.85 0.60 6.31 16 28 O -0.17 -3.66 9.73 -5.01 -0.05 -3.71 16 29 H 0.06 0.75 6.22 -2.39 -0.01 0.73 16 30 H 0.07 0.71 6.32 -2.39 -0.02 0.70 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.08 1.16 6.61 -2.39 -0.02 1.15 16 33 H 0.05 1.08 6.71 -2.39 -0.02 1.06 16 34 H 0.05 0.36 5.89 -2.39 -0.01 0.34 16 35 H 0.09 0.45 7.82 -2.39 -0.02 0.43 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.05 0.48 6.71 -2.39 -0.02 0.47 16 38 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.07 0.67 6.02 -2.39 -0.01 0.65 16 40 H 0.13 0.74 7.87 -2.38 -0.02 0.72 16 41 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 43 H 0.42 10.14 8.32 -92.71 -0.77 9.37 16 44 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.09 2.71 8.00 -2.39 -0.02 2.69 16 46 H 0.02 0.92 7.38 -2.39 -0.02 0.91 16 47 H 0.02 1.02 7.51 -2.38 -0.02 1.00 16 48 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 49 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -72.93 396.75 0.52 -72.41 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.18 Total: 17.44 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 7.04 Total: 14.51 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -8.61 Total: -126.95 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.12 Total: -26.22 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -72.93 0.52 -72.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016384853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.277 kcal (2) G-P(sol) polarization free energy of solvation -72.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds