Wall clock time and date at job start Tue Mar 31 2020 19:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.46949 * 2 1 4 4 C 1.46823 * 124.33503 * 270.06083 * 3 2 1 5 5 C 1.54478 * 105.44290 * 163.00148 * 4 3 2 6 6 H 1.08997 * 110.97265 * 267.23337 * 5 4 3 7 7 C 1.50698 * 110.97023 * 143.50721 * 5 4 3 8 8 O 1.21288 * 119.99870 * 3.09113 * 7 5 4 9 9 N 1.34780 * 120.00587 * 183.08861 * 7 5 4 10 10 C 1.46497 * 120.00139 * 179.72543 * 9 7 5 11 11 H 1.08998 * 115.55505 * 350.96453 * 10 9 7 12 12 C 1.53027 * 117.49924 * 136.69377 * 10 9 7 13 13 C 1.52817 * 117.49840 * 205.27683 * 10 9 7 14 14 C 1.53184 * 117.71259 * 144.90224 * 13 10 9 15 15 C 1.53352 * 108.77053 * 158.88867 * 14 13 10 16 16 N 1.46840 * 108.81473 * 51.30635 * 15 14 13 17 17 C 1.36936 * 120.38229 * 123.12183 * 16 15 14 18 18 H 1.07998 * 120.00244 * 208.91249 * 17 16 15 19 19 C 1.38816 * 120.00231 * 28.91325 * 17 16 15 20 20 N 1.31616 * 119.99778 * 17.88343 * 19 17 16 21 21 Si 1.86794 * 120.00033 * 197.88327 * 19 17 16 22 22 H 1.48496 * 109.47188 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47015 * 120.00136 * 21 19 17 24 24 H 1.48499 * 109.47043 * 239.99695 * 21 19 17 25 25 C 1.46839 * 119.23229 * 303.09443 * 16 15 14 26 26 C 1.53186 * 117.71833 * 0.13853 * 13 10 9 27 27 C 1.54631 * 101.79966 * 25.37496 * 5 4 3 28 28 C 1.34416 * 124.34879 * 90.02504 * 3 2 1 29 29 O 1.21284 * 124.94122 * 0.44640 * 28 3 2 30 30 H 1.09007 * 109.47333 * 60.00288 * 1 2 3 31 31 H 1.09005 * 109.47592 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47332 * 299.99848 * 1 2 3 33 33 H 1.08999 * 109.47014 * 239.99725 * 2 1 3 34 34 H 1.09001 * 109.46736 * 120.00054 * 2 1 3 35 35 H 1.09000 * 110.28119 * 44.00021 * 4 3 2 36 36 H 1.08993 * 110.23691 * 281.98042 * 4 3 2 37 37 H 0.97005 * 119.99575 * 0.02562 * 9 7 5 38 38 H 1.09000 * 117.50536 * 214.95533 * 12 10 9 39 39 H 1.08996 * 117.50704 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.58745 * 278.67701 * 14 13 10 41 41 H 1.09001 * 109.58560 * 39.10409 * 14 13 10 42 42 H 1.09002 * 109.57741 * 291.50745 * 15 14 13 43 43 H 1.09004 * 109.68903 * 171.17211 * 15 14 13 44 44 H 0.96999 * 120.00296 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.58396 * 297.11016 * 25 16 15 46 46 H 1.09003 * 109.58074 * 176.70691 * 25 16 15 47 47 H 1.08999 * 109.58190 * 320.90014 * 26 13 10 48 48 H 1.08996 * 109.58719 * 81.32567 * 26 13 10 49 49 H 1.08996 * 110.49148 * 93.89847 * 27 5 4 50 50 H 1.09003 * 110.48816 * 216.41114 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2931 2.1624 -1.2124 5 6 2.3524 3.6347 -0.7484 6 1 1.3778 4.1134 -0.8440 7 6 3.4028 4.3990 -1.5123 8 8 4.0240 3.8537 -2.4000 9 7 3.6519 5.6884 -1.2093 10 6 4.6772 6.4295 -1.9479 11 1 5.2978 5.8336 -2.6171 12 6 4.3426 7.8591 -2.3794 13 6 5.3358 7.6151 -1.2435 14 6 6.8182 7.8779 -1.5264 15 6 7.1352 9.3380 -1.1808 16 7 6.6518 9.6189 0.1770 17 6 7.5122 10.0812 1.1367 18 1 7.3309 9.8576 2.1776 19 6 8.6176 10.8374 0.7717 20 7 8.6631 11.4066 -0.4142 21 14 10.0405 11.0473 1.9636 22 1 9.7462 10.3126 3.2201 23 1 11.2814 10.5061 1.3533 24 1 10.2254 12.4897 2.2647 25 6 5.2349 9.3989 0.4936 26 6 4.8794 7.9400 0.1822 27 6 2.7506 3.4820 0.7379 28 6 2.2715 2.0961 1.1098 29 8 2.1363 1.6890 2.2442 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.4913 2.0277 -1.9385 36 1 3.2483 1.8643 -1.6445 37 1 3.1553 6.1244 -0.4991 38 1 4.7430 8.2038 -3.3328 39 1 3.3599 8.2482 -2.1134 40 1 7.4301 7.2161 -0.9135 41 1 7.0263 7.6987 -2.5813 42 1 6.6358 9.9980 -1.8902 43 1 8.2121 9.5006 -1.2261 44 1 9.4356 11.9347 -0.6694 45 1 4.6178 10.0626 -0.1121 46 1 5.0614 9.5994 1.5509 47 1 3.8011 7.8018 0.2610 48 1 5.3867 7.2817 0.8873 49 1 3.8320 3.5555 0.8527 50 1 2.2513 4.2363 1.3460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016652970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:17 Heat of formation + Delta-G solvation = -25.152398 kcal Electronic energy + Delta-G solvation = -29313.177016 eV Core-core repulsion = 25341.465687 eV Total energy + Delta-G solvation = -3971.711329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.16820 -39.80173 -38.49849 -36.61081 -35.54331 -34.36370 -33.14963 -31.63492 -30.22799 -29.90878 -28.31424 -28.07033 -24.70220 -24.36931 -23.33043 -22.52035 -21.77809 -20.81665 -20.32047 -19.71209 -18.29699 -17.82446 -17.29557 -16.57681 -16.31958 -16.06820 -15.42417 -15.13916 -14.82200 -14.44065 -14.17461 -14.15137 -14.08651 -13.62148 -13.56456 -13.48056 -13.36515 -13.15119 -12.75656 -12.68944 -12.34263 -12.29751 -11.98331 -11.79662 -11.70097 -11.61843 -11.48601 -11.37507 -11.01731 -10.76000 -10.47523 -10.37308 -10.34290 -9.99038 -9.96340 -9.71948 -9.66979 -9.41113 -9.10401 -8.56434 -8.47518 -6.66969 -5.81260 -3.24505 2.23181 2.32181 2.51844 2.93026 3.35718 3.44269 3.46300 3.82098 3.92558 4.11788 4.33828 4.46448 4.47999 4.62418 4.75376 4.76625 4.90951 4.95496 5.06594 5.07557 5.07934 5.16609 5.28663 5.32575 5.37009 5.44027 5.45952 5.50473 5.59765 5.74073 5.78578 5.99007 6.02590 6.02930 6.14860 6.24751 6.38488 6.45671 6.57646 6.59868 6.65606 6.71979 6.78881 6.92575 7.31349 7.33928 7.64678 7.78172 7.81802 7.99062 8.44218 9.19528 9.83015 10.39240 11.26470 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.002289 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.100252 B =12231.344097 C =13014.443611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.124 4.124 6 H 0.119 0.881 7 C 0.528 3.472 8 O -0.536 6.536 9 N -0.690 5.690 10 C 0.066 3.934 11 H 0.133 0.867 12 C -0.181 4.181 13 C -0.095 4.095 14 C -0.106 4.106 15 C 0.172 3.828 16 N -0.589 5.589 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.149 3.851 26 C -0.097 4.097 27 C -0.147 4.147 28 C 0.521 3.479 29 O -0.529 6.529 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.402 0.598 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.018 0.982 43 H 0.091 0.909 44 H 0.253 0.747 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.045 0.955 48 H 0.065 0.935 49 H 0.112 0.888 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.450 -17.786 -4.011 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.005 4.005 5 C -0.146 4.146 6 H 0.137 0.863 7 C 0.313 3.687 8 O -0.413 6.413 9 N -0.338 5.338 10 C -0.039 4.039 11 H 0.151 0.849 12 C -0.220 4.220 13 C -0.096 4.096 14 C -0.145 4.145 15 C 0.046 3.954 16 N -0.311 5.311 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.023 3.977 26 C -0.137 4.137 27 C -0.187 4.187 28 C 0.309 3.691 29 O -0.405 6.405 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.238 0.762 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.036 0.964 43 H 0.109 0.891 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.130 0.870 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.972 -18.371 -4.103 24.687 hybrid contribution 0.396 0.504 0.700 0.950 sum -15.576 -17.867 -3.402 23.946 Atomic orbital electron populations 1.22166 0.95656 1.02466 1.02509 1.21359 0.94397 0.80898 1.03386 1.48380 1.65917 1.14027 1.07185 1.21980 1.03571 0.88005 0.86940 1.22237 1.00263 0.96696 0.95386 0.86344 1.19985 0.83370 0.81885 0.83468 1.90717 1.50463 1.68447 1.31695 1.45372 1.39238 1.11353 1.37886 1.21954 0.94024 0.87666 1.00263 0.84945 1.23529 1.00538 0.97671 1.00215 1.21967 0.95589 0.98159 0.93917 1.21884 0.91317 1.02009 0.99324 1.20768 1.01109 0.88358 0.85117 1.43980 1.02741 1.75458 1.08969 1.19220 1.04037 1.26113 0.88894 0.91742 1.25053 1.00639 0.96851 0.97099 1.70039 1.29588 1.34042 1.20837 0.86258 0.82725 0.77386 0.80616 1.20238 1.21533 1.21747 1.20838 0.87124 0.91510 0.98265 1.21636 0.97731 1.00801 0.93527 1.22376 1.04804 0.96737 0.94806 1.20738 0.76433 0.87547 0.84430 1.90744 1.53312 1.75408 1.21034 0.92350 0.91312 0.92186 0.90119 0.89872 0.89710 0.88866 0.76214 0.88279 0.89011 0.92086 0.93002 0.96368 0.89138 0.93665 0.96325 0.92705 0.93633 0.91683 0.86977 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.12 0.84 6.65 -4.04 -0.03 0.81 16 3 N -0.62 -5.28 2.93 -172.37 -0.51 -5.79 16 4 C 0.12 0.87 6.69 -3.09 -0.02 0.85 16 5 C -0.12 -0.89 3.54 -90.14 -0.32 -1.21 16 6 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 7 C 0.53 5.52 7.06 -10.99 -0.08 5.44 16 8 O -0.54 -7.54 15.10 5.55 0.08 -7.46 16 9 N -0.69 -7.14 5.33 -53.88 -0.29 -7.43 16 10 C 0.07 0.86 6.14 -68.01 -0.42 0.44 16 11 H 0.13 1.90 7.40 -51.93 -0.38 1.52 16 12 C -0.18 -2.39 9.86 -26.80 -0.26 -2.65 16 13 C -0.09 -1.45 1.94 -154.49 -0.30 -1.74 16 14 C -0.11 -1.92 5.83 -26.45 -0.15 -2.08 16 15 C 0.17 3.94 5.41 -3.67 -0.02 3.92 16 16 N -0.59 -14.17 2.94 -172.26 -0.51 -14.68 16 17 C -0.25 -6.77 9.54 -15.06 -0.14 -6.91 16 18 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 19 C 0.00 0.06 4.88 -17.43 -0.09 -0.02 16 20 N -0.90 -25.67 11.23 55.49 0.62 -25.05 16 21 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.15 2.93 6.51 -3.68 -0.02 2.91 16 26 C -0.10 -1.50 5.37 -26.45 -0.14 -1.64 16 27 C -0.15 -1.18 6.40 -26.74 -0.17 -1.35 16 28 C 0.52 5.58 8.02 -10.86 -0.09 5.49 16 29 O -0.53 -7.72 17.59 5.55 0.10 -7.62 16 30 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.83 7.01 -51.93 -0.36 0.47 16 37 H 0.40 3.37 7.12 -40.82 -0.29 3.08 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 47 H 0.05 0.55 6.75 -51.93 -0.35 0.20 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.11 0.98 7.89 -51.93 -0.41 0.57 16 50 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -33.02 398.21 -9.79 -42.81 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.40 Total: 1.21 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.87 Total: 1.64 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.68 Total: -52.94 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.18 Total: -15.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.02 -9.79 -42.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016652970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.656 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds