Wall clock time and date at job start Tue Mar 31 2020 19:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.46949 * 2 1 4 4 C 1.46823 * 124.33503 * 270.06083 * 3 2 1 5 5 C 1.54478 * 105.44290 * 163.00148 * 4 3 2 6 6 H 1.08997 * 110.97265 * 267.23337 * 5 4 3 7 7 C 1.50698 * 110.97023 * 143.50721 * 5 4 3 8 8 O 1.21288 * 119.99870 * 3.09113 * 7 5 4 9 9 N 1.34780 * 120.00587 * 183.08861 * 7 5 4 10 10 C 1.46497 * 120.00139 * 179.72543 * 9 7 5 11 11 H 1.08998 * 115.55505 * 350.96453 * 10 9 7 12 12 C 1.53027 * 117.49924 * 136.69377 * 10 9 7 13 13 C 1.52817 * 117.49840 * 205.27683 * 10 9 7 14 14 C 1.53184 * 117.71259 * 144.90224 * 13 10 9 15 15 C 1.53352 * 108.77053 * 158.88867 * 14 13 10 16 16 N 1.46840 * 108.81473 * 51.30635 * 15 14 13 17 17 C 1.36936 * 120.38229 * 123.12183 * 16 15 14 18 18 H 1.07998 * 120.00244 * 208.91249 * 17 16 15 19 19 C 1.38816 * 120.00231 * 28.91325 * 17 16 15 20 20 N 1.31616 * 119.99778 * 17.88343 * 19 17 16 21 21 Si 1.86794 * 120.00033 * 197.88327 * 19 17 16 22 22 H 1.48496 * 109.47188 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47015 * 120.00136 * 21 19 17 24 24 H 1.48499 * 109.47043 * 239.99695 * 21 19 17 25 25 C 1.46839 * 119.23229 * 303.09443 * 16 15 14 26 26 C 1.53186 * 117.71833 * 0.13853 * 13 10 9 27 27 C 1.54631 * 101.79966 * 25.37496 * 5 4 3 28 28 C 1.34416 * 124.34879 * 90.02504 * 3 2 1 29 29 O 1.21284 * 124.94122 * 0.44640 * 28 3 2 30 30 H 1.09007 * 109.47333 * 60.00288 * 1 2 3 31 31 H 1.09005 * 109.47592 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47332 * 299.99848 * 1 2 3 33 33 H 1.08999 * 109.47014 * 239.99725 * 2 1 3 34 34 H 1.09001 * 109.46736 * 120.00054 * 2 1 3 35 35 H 1.09000 * 110.28119 * 44.00021 * 4 3 2 36 36 H 1.08993 * 110.23691 * 281.98042 * 4 3 2 37 37 H 0.97005 * 119.99575 * 0.02562 * 9 7 5 38 38 H 1.09000 * 117.50536 * 214.95533 * 12 10 9 39 39 H 1.08996 * 117.50704 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.58745 * 278.67701 * 14 13 10 41 41 H 1.09001 * 109.58560 * 39.10409 * 14 13 10 42 42 H 1.09002 * 109.57741 * 291.50745 * 15 14 13 43 43 H 1.09004 * 109.68903 * 171.17211 * 15 14 13 44 44 H 0.96999 * 120.00296 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.58396 * 297.11016 * 25 16 15 46 46 H 1.09003 * 109.58074 * 176.70691 * 25 16 15 47 47 H 1.08999 * 109.58190 * 320.90014 * 26 13 10 48 48 H 1.08996 * 109.58719 * 81.32567 * 26 13 10 49 49 H 1.08996 * 110.49148 * 93.89847 * 27 5 4 50 50 H 1.09003 * 110.48816 * 216.41114 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2931 2.1624 -1.2124 5 6 2.3524 3.6347 -0.7484 6 1 1.3778 4.1134 -0.8440 7 6 3.4028 4.3990 -1.5123 8 8 4.0240 3.8537 -2.4000 9 7 3.6519 5.6884 -1.2093 10 6 4.6772 6.4295 -1.9479 11 1 5.2978 5.8336 -2.6171 12 6 4.3426 7.8591 -2.3794 13 6 5.3358 7.6151 -1.2435 14 6 6.8182 7.8779 -1.5264 15 6 7.1352 9.3380 -1.1808 16 7 6.6518 9.6189 0.1770 17 6 7.5122 10.0812 1.1367 18 1 7.3309 9.8576 2.1776 19 6 8.6176 10.8374 0.7717 20 7 8.6631 11.4066 -0.4142 21 14 10.0405 11.0473 1.9636 22 1 9.7462 10.3126 3.2201 23 1 11.2814 10.5061 1.3533 24 1 10.2254 12.4897 2.2647 25 6 5.2349 9.3989 0.4936 26 6 4.8794 7.9400 0.1822 27 6 2.7506 3.4820 0.7379 28 6 2.2715 2.0961 1.1098 29 8 2.1363 1.6890 2.2442 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.4913 2.0277 -1.9385 36 1 3.2483 1.8643 -1.6445 37 1 3.1553 6.1244 -0.4991 38 1 4.7430 8.2038 -3.3328 39 1 3.3599 8.2482 -2.1134 40 1 7.4301 7.2161 -0.9135 41 1 7.0263 7.6987 -2.5813 42 1 6.6358 9.9980 -1.8902 43 1 8.2121 9.5006 -1.2261 44 1 9.4356 11.9347 -0.6694 45 1 4.6178 10.0626 -0.1121 46 1 5.0614 9.5994 1.5509 47 1 3.8011 7.8018 0.2610 48 1 5.3867 7.2817 0.8873 49 1 3.8320 3.5555 0.8527 50 1 2.2513 4.2363 1.3460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016652970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:16 Heat of formation + Delta-G solvation = -46.165771 kcal Electronic energy + Delta-G solvation = -29314.088224 eV Core-core repulsion = 25341.465687 eV Total energy + Delta-G solvation = -3972.622538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.92679 -40.79636 -39.64847 -37.49158 -37.05119 -35.04032 -34.34618 -33.27594 -31.64659 -30.73257 -29.84519 -28.75699 -26.23563 -25.36973 -24.07018 -23.92599 -22.99668 -22.16672 -21.20249 -20.42597 -19.77577 -18.71089 -18.21254 -17.95569 -17.29593 -16.97509 -16.70649 -16.22399 -15.94148 -15.68990 -15.35786 -15.12518 -15.03210 -14.84349 -14.70362 -14.68360 -14.29792 -14.20776 -13.97605 -13.74404 -13.32216 -13.28281 -13.08970 -12.87908 -12.83709 -12.60739 -12.57794 -12.46053 -12.38653 -12.23234 -12.01402 -11.98113 -11.76425 -11.36248 -11.26192 -11.17524 -10.84228 -10.64058 -10.45991 -9.79427 -9.64011 -8.60637 -7.85534 -5.31228 1.44240 1.45124 1.48026 1.50579 1.57654 1.82569 2.15169 2.51820 2.97611 3.14816 3.28942 3.32807 3.65291 3.72765 3.84577 3.87238 3.92140 4.01925 4.10059 4.15395 4.18159 4.24838 4.47550 4.55809 4.56390 4.58604 4.66426 4.74996 4.76339 4.83371 4.87787 4.92826 4.95255 4.96752 5.00250 5.06104 5.12305 5.20993 5.27445 5.34865 5.41790 5.52476 5.53823 5.59025 5.67584 5.80438 6.03226 6.42521 6.51496 7.05852 7.17766 7.19364 7.90938 8.40879 9.19333 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.002289 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.100252 B =12231.344097 C =13014.443611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.616 5.616 4 C 0.117 3.883 5 C -0.108 4.108 6 H 0.155 0.845 7 C 0.531 3.469 8 O -0.573 6.573 9 N -0.682 5.682 10 C 0.089 3.911 11 H 0.121 0.879 12 C -0.168 4.168 13 C -0.118 4.118 14 C -0.094 4.094 15 C 0.180 3.820 16 N -0.609 5.609 17 C -0.259 4.259 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.933 5.933 21 Si 0.961 3.039 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.143 3.857 26 C -0.082 4.082 27 C -0.141 4.141 28 C 0.511 3.489 29 O -0.578 6.578 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.416 0.584 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.046 0.954 41 H 0.065 0.935 42 H -0.001 1.001 43 H 0.051 0.949 44 H 0.249 0.751 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.089 0.911 48 H 0.056 0.944 49 H 0.104 0.896 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.916 -18.979 -4.342 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.349 5.349 4 C -0.005 4.005 5 C -0.129 4.129 6 H 0.173 0.827 7 C 0.318 3.682 8 O -0.452 6.452 9 N -0.331 5.331 10 C -0.017 4.017 11 H 0.138 0.862 12 C -0.206 4.206 13 C -0.119 4.119 14 C -0.134 4.134 15 C 0.054 3.946 16 N -0.332 5.332 17 C -0.389 4.389 18 H 0.082 0.918 19 C -0.247 4.247 20 N -0.579 5.579 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.220 1.220 25 C 0.018 3.982 26 C -0.121 4.121 27 C -0.182 4.182 28 C 0.300 3.700 29 O -0.458 6.458 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.254 0.746 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.017 0.983 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.075 0.925 49 H 0.123 0.877 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.483 -19.584 -4.439 27.293 hybrid contribution 1.140 0.834 0.757 1.603 sum -17.343 -18.750 -3.681 25.805 Atomic orbital electron populations 1.22099 0.94569 1.03353 1.02010 1.21539 0.95291 0.80282 1.03685 1.48531 1.64733 1.14513 1.07092 1.22062 1.03807 0.87941 0.86714 1.22213 1.00604 0.96250 0.93871 0.82747 1.20449 0.83234 0.81582 0.82935 1.90719 1.51843 1.69135 1.33495 1.45276 1.38529 1.11374 1.37956 1.21618 0.93812 0.87410 0.98905 0.86172 1.23604 1.00497 0.97515 0.99026 1.21788 0.93968 1.01377 0.94779 1.21619 0.93868 0.98067 0.99816 1.20527 0.98438 0.91038 0.84586 1.44248 1.04552 1.75659 1.08737 1.19524 1.04653 1.25182 0.89545 0.91790 1.25760 1.02954 0.97311 0.98680 1.70179 1.29976 1.35227 1.22541 0.85297 0.79678 0.76982 0.79051 1.19186 1.21862 1.21958 1.21027 0.84581 0.94430 0.98183 1.21448 1.00296 0.97112 0.93272 1.22370 1.04458 0.95696 0.95630 1.21207 0.75987 0.88688 0.84131 1.90715 1.55597 1.76566 1.22915 0.91168 0.89838 0.94182 0.87942 0.91489 0.87173 0.90389 0.74618 0.88386 0.86957 0.93493 0.91597 0.98269 0.93044 0.94188 0.96413 0.92857 0.89255 0.92509 0.87743 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.24 71.98 0.74 -0.86 16 2 C 0.11 1.39 6.65 86.38 0.57 1.97 16 3 N -0.62 -9.32 2.93 -817.86 -2.40 -11.72 16 4 C 0.12 1.39 6.69 86.82 0.58 1.97 16 5 C -0.11 -1.14 3.54 -10.48 -0.04 -1.18 16 6 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 7 C 0.53 9.35 7.06 87.66 0.62 9.97 16 8 O -0.57 -14.82 15.10 -3.06 -0.05 -14.87 16 9 N -0.68 -11.50 5.33 -442.78 -2.36 -13.86 16 10 C 0.09 2.06 6.14 44.94 0.28 2.33 16 11 H 0.12 3.20 7.40 -2.39 -0.02 3.18 16 12 C -0.17 -3.91 9.86 30.55 0.30 -3.61 16 13 C -0.12 -3.35 1.94 -52.17 -0.10 -3.45 16 14 C -0.09 -3.43 5.83 30.77 0.18 -3.25 16 15 C 0.18 8.48 5.41 86.43 0.47 8.94 16 16 N -0.61 -29.64 2.94 -698.90 -2.05 -31.70 16 17 C -0.26 -14.04 9.54 84.03 0.80 -13.24 16 18 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 19 C -0.05 -2.88 4.88 84.86 0.41 -2.46 16 20 N -0.93 -55.01 11.23 21.65 0.24 -54.77 16 21 Si 0.96 44.91 29.59 68.60 2.03 46.94 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 25 C 0.14 5.46 6.51 86.43 0.56 6.02 16 26 C -0.08 -2.32 5.37 30.77 0.17 -2.15 16 27 C -0.14 -1.88 6.40 30.59 0.20 -1.68 16 28 C 0.51 10.28 8.02 87.90 0.71 10.98 16 29 O -0.58 -16.86 17.59 -3.04 -0.05 -16.92 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.08 0.57 8.14 -2.38 -0.02 0.56 16 32 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.05 7.92 -2.39 -0.02 1.03 16 35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.23 7.01 -2.39 -0.02 1.21 16 37 H 0.42 4.87 7.12 -92.70 -0.66 4.21 16 38 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 42 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.05 2.80 5.93 -2.39 -0.01 2.79 16 44 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.02 0.68 8.14 -2.38 -0.02 0.67 16 46 H 0.05 2.01 7.92 -2.39 -0.02 1.99 16 47 H 0.09 1.74 6.75 -2.39 -0.02 1.72 16 48 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.10 1.60 7.89 -2.39 -0.02 1.58 16 50 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -75.48 398.21 2.08 -73.40 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.27 Total: 13.18 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 6.44 Total: 10.31 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -6.57 Total: -112.04 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.10 Total: -31.78 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -75.48 2.08 -73.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016652970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.234 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds