Wall clock time and date at job start Tue Mar 31 2020 19:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47457 * 2 1 4 4 C 1.46891 * 111.00146 * 66.04559 * 3 2 1 5 5 C 1.52995 * 109.47468 * 199.63471 * 4 3 2 6 6 C 1.46903 * 110.99993 * 190.00273 * 3 2 1 7 7 C 1.50698 * 109.47203 * 75.64719 * 6 3 2 8 8 C 1.35135 * 125.61566 * 84.85298 * 7 6 3 9 9 C 1.40362 * 107.11692 * 179.97438 * 8 7 6 10 10 C 1.36548 * 106.70463 * 0.02562 * 9 8 7 11 11 C 1.46661 * 125.98160 * 179.97438 * 10 9 8 12 12 O 1.21688 * 120.00587 * 0.26783 * 11 10 9 13 13 N 1.34784 * 119.99431 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99473 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.85604 * 336.19487 * 14 13 11 16 16 C 1.53782 * 113.61275 * 107.50587 * 14 13 11 17 17 C 1.53779 * 87.08054 * 89.11454 * 16 14 13 18 18 H 1.09009 * 113.61521 * 270.87932 * 17 16 14 19 19 N 1.46506 * 113.69107 * 139.99730 * 17 16 14 20 20 C 1.36929 * 120.00135 * 107.46300 * 19 17 16 21 21 H 1.07998 * 120.00677 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00141 * 180.02562 * 20 19 17 23 23 N 1.31628 * 119.99489 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00413 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47075 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47099 * 120.00032 * 24 22 20 27 27 H 1.48501 * 109.47175 * 240.00062 * 24 22 20 28 28 C 1.53773 * 87.08292 * 25.43362 * 17 16 14 29 29 O 1.33931 * 125.62019 * 265.11697 * 7 6 3 30 30 H 1.08999 * 109.46469 * 300.00074 * 1 2 3 31 31 H 1.08997 * 109.46716 * 59.99613 * 1 2 3 32 32 H 1.08989 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46990 * 239.99974 * 2 1 3 34 34 H 1.09000 * 109.47189 * 120.00250 * 2 1 3 35 35 H 1.08998 * 109.47425 * 319.64037 * 4 3 2 36 36 H 1.09008 * 109.47002 * 79.63761 * 4 3 2 37 37 H 1.09004 * 109.47506 * 174.83021 * 5 4 3 38 38 H 1.09007 * 109.46819 * 294.82942 * 5 4 3 39 39 H 1.08999 * 109.46996 * 54.82926 * 5 4 3 40 40 H 1.09004 * 109.47113 * 315.64677 * 6 3 2 41 41 H 1.09002 * 109.47283 * 195.64919 * 6 3 2 42 42 H 1.07996 * 126.43934 * 359.97341 * 8 7 6 43 43 H 1.07999 * 126.64558 * 179.97438 * 9 8 7 44 44 H 0.96994 * 120.00389 * 359.97438 * 13 11 10 45 45 H 1.08999 * 113.61511 * 203.66371 * 16 14 13 46 46 H 1.08998 * 113.61244 * 334.56817 * 16 14 13 47 47 H 0.97000 * 119.99566 * 287.45733 * 19 17 16 48 48 H 0.96994 * 119.99563 * 179.97438 * 23 22 20 49 49 H 1.09005 * 113.61160 * 220.02054 * 28 17 16 50 50 H 1.08996 * 113.69317 * 89.12672 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0669 1.2532 5 6 1.7406 3.5812 1.0466 6 6 3.4686 1.4310 -0.2382 7 6 3.7462 1.1750 -1.6971 8 6 3.7273 2.1056 -2.6769 9 6 4.0395 1.4482 -3.8771 10 6 4.2350 0.1333 -3.5650 11 6 4.5825 -0.9340 -4.5091 12 8 4.7263 -0.6786 -5.6901 13 7 4.7483 -2.1966 -4.0675 14 6 5.0948 -3.2627 -5.0106 15 1 4.7960 -3.0363 -6.0340 16 6 6.5485 -3.7482 -4.8844 17 6 6.0375 -4.7603 -3.8455 18 1 6.0374 -4.3765 -2.8252 19 7 6.6596 -6.0821 -3.9558 20 6 7.5690 -6.4913 -3.0175 21 1 7.8281 -5.8395 -2.1962 22 6 8.1589 -7.7435 -3.1223 23 7 7.8436 -8.5377 -4.1235 24 14 9.4001 -8.3015 -1.8427 25 1 9.5787 -7.2326 -0.8273 26 1 8.9071 -9.5356 -1.1801 27 1 10.7007 -8.5800 -2.5031 28 6 4.6691 -4.6636 -4.5402 29 8 4.0474 -0.0130 -2.2371 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.6594 1.7872 1.5495 36 1 2.3720 1.7738 2.0342 37 1 1.3933 4.0874 1.9474 38 1 2.7707 3.8724 0.8405 39 1 1.1080 3.8628 0.2049 40 1 3.9604 0.6676 0.3646 41 1 3.8511 2.4138 0.0375 42 1 3.5124 3.1573 -2.5586 43 1 4.1105 1.8955 -4.8575 44 1 4.6382 -2.3993 -3.1254 45 1 6.9345 -4.2117 -5.7923 46 1 7.2242 -3.0002 -4.4696 47 1 6.4272 -6.6675 -4.6936 48 1 8.2560 -9.4125 -4.1969 49 1 3.8274 -4.6545 -3.8476 50 1 4.5397 -5.3768 -5.3542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021120294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:43 Heat of formation + Delta-G solvation = 16.110099 kcal Electronic energy + Delta-G solvation = -28573.588233 eV Core-core repulsion = 24603.666180 eV Total energy + Delta-G solvation = -3969.922053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.89062 -39.85775 -38.54583 -37.90780 -34.16453 -33.38551 -32.62391 -32.23090 -31.91294 -29.98223 -28.99804 -26.24969 -25.14668 -24.57088 -23.51843 -22.93177 -21.98468 -21.89861 -20.85577 -20.35688 -18.99283 -18.41905 -17.11642 -16.80412 -16.66157 -15.90678 -15.79732 -15.63399 -15.03061 -14.74226 -14.52387 -14.41281 -14.28920 -13.83863 -13.71982 -13.30902 -13.18286 -13.12600 -12.88350 -12.68689 -12.65899 -12.23885 -12.16028 -12.05124 -11.87669 -11.84461 -11.65438 -11.46396 -11.07233 -10.93485 -10.81681 -10.35946 -10.30845 -10.17810 -10.14975 -9.92067 -9.58850 -9.01269 -8.91737 -8.87322 -8.62823 -6.99921 -5.81543 -3.10530 0.89235 2.12398 2.39736 3.13482 3.16838 3.40393 3.46074 3.48346 3.50508 4.22735 4.45162 4.56143 4.57591 4.71968 4.73155 4.77557 4.84697 4.96791 5.01522 5.02803 5.09334 5.18259 5.18860 5.30218 5.42207 5.42403 5.46182 5.48339 5.56702 5.62149 5.62931 5.69640 5.80258 5.84816 5.85957 5.88669 6.09181 6.17749 6.23966 6.30141 6.42312 6.48720 6.55816 6.60170 6.65773 6.74768 7.04866 7.51007 7.66511 8.09682 8.36806 9.48198 10.05291 10.39914 11.40795 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.002296 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.542317 B =12189.739087 C =13400.515129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 N -0.535 5.535 4 C 0.045 3.955 5 C -0.149 4.149 6 C 0.129 3.871 7 C 0.023 3.977 8 C -0.198 4.198 9 C -0.122 4.122 10 C -0.071 4.071 11 C 0.603 3.397 12 O -0.523 6.523 13 N -0.694 5.694 14 C 0.114 3.886 15 H 0.099 0.901 16 C -0.175 4.175 17 C 0.166 3.834 18 H 0.073 0.927 19 N -0.712 5.712 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.158 4.158 29 O -0.162 6.162 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.405 0.595 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.386 0.614 48 H 0.255 0.745 49 H 0.064 0.936 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.880 24.440 9.405 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 N -0.261 5.261 4 C -0.082 4.082 5 C -0.207 4.207 6 C 0.002 3.998 7 C -0.030 4.030 8 C -0.217 4.217 9 C -0.143 4.143 10 C -0.123 4.123 11 C 0.389 3.611 12 O -0.401 6.401 13 N -0.344 5.344 14 C 0.009 3.991 15 H 0.117 0.883 16 C -0.218 4.218 17 C 0.054 3.946 18 H 0.091 0.909 19 N -0.349 5.349 20 C -0.375 4.375 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.198 4.198 29 O -0.058 6.058 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.126 0.874 42 H 0.172 0.828 43 H 0.177 0.823 44 H 0.240 0.760 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.220 0.780 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.849 24.472 8.502 29.861 hybrid contribution 1.017 -0.910 1.386 1.945 sum -13.831 23.562 9.888 29.056 Atomic orbital electron populations 1.21811 0.94483 1.01893 1.02394 1.22179 0.96443 0.88162 1.01384 1.62016 1.11963 1.16705 1.35380 1.22184 1.01497 0.95025 0.89471 1.21803 1.02165 0.94530 1.02154 1.20573 0.89263 1.02971 0.86999 1.22482 1.01862 0.82560 0.96090 1.21497 1.07825 1.01037 0.91392 1.21942 1.00277 0.91835 1.00248 1.22119 1.12486 0.96579 0.81146 1.16540 0.77263 0.81207 0.86121 1.90872 1.52081 1.82011 1.15166 1.45631 1.69444 1.07131 1.12163 1.21909 0.98032 0.85985 0.93200 0.88275 1.24317 0.94484 1.00190 1.02775 1.21623 0.90229 0.87160 0.95584 0.90872 1.42401 1.48536 1.13430 1.30580 1.19332 1.15650 0.98816 1.03731 0.91085 1.24780 1.00686 0.96984 0.98485 1.69672 1.46611 1.09941 1.31685 0.86114 0.81017 0.78311 0.80712 1.20553 1.21831 1.21804 1.23865 0.99802 0.94652 1.01508 1.84001 1.67793 1.33236 1.20800 0.92629 0.91765 0.91995 0.90394 0.94406 0.89989 0.94357 0.92204 0.92792 0.91590 0.92336 0.87365 0.82784 0.82291 0.76030 0.89336 0.92315 0.77975 0.93470 0.91689 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.88 37.16 0.37 -0.62 16 2 C 0.05 0.35 5.50 -3.82 -0.02 0.33 16 3 N -0.54 -3.83 4.36 -236.08 -1.03 -4.86 16 4 C 0.05 0.25 5.55 -3.83 -0.02 0.22 16 5 C -0.15 -0.69 9.96 37.16 0.37 -0.32 16 6 C 0.13 0.93 5.34 -4.98 -0.03 0.90 16 7 C 0.02 0.22 6.15 -35.41 -0.22 0.01 16 8 C -0.20 -1.90 10.77 -39.89 -0.43 -2.33 16 9 C -0.12 -1.42 10.62 -39.39 -0.42 -1.83 16 10 C -0.07 -0.92 7.13 -36.79 -0.26 -1.19 16 11 C 0.60 9.06 7.79 -12.86 -0.10 8.96 16 12 O -0.52 -9.34 16.47 5.20 0.09 -9.25 16 13 N -0.69 -9.75 5.26 -54.33 -0.29 -10.04 16 14 C 0.11 1.75 4.32 -67.12 -0.29 1.46 16 15 H 0.10 1.57 7.47 -51.93 -0.39 1.18 16 16 C -0.18 -3.12 7.68 -25.92 -0.20 -3.32 16 17 C 0.17 3.21 4.35 -67.12 -0.29 2.91 16 18 H 0.07 1.39 8.10 -51.92 -0.42 0.97 16 19 N -0.71 -17.57 5.40 -52.64 -0.28 -17.85 16 20 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.38 5.50 -17.42 -0.10 -0.47 16 23 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 24 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C -0.16 -2.52 7.58 -25.92 -0.20 -2.72 16 29 O -0.16 -1.91 10.03 5.02 0.05 -1.86 16 30 H 0.05 0.32 6.25 -51.93 -0.32 -0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.72 7.12 -51.93 -0.37 0.35 16 34 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 35 H 0.08 0.42 5.88 -51.93 -0.31 0.11 16 36 H 0.04 0.19 8.00 -51.92 -0.42 -0.22 16 37 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.05 0.23 6.89 -51.92 -0.36 -0.12 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.41 8.00 -51.93 -0.42 0.00 16 41 H 0.11 0.58 6.56 -51.93 -0.34 0.24 16 42 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.40 5.06 8.46 -40.82 -0.35 4.71 16 45 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.39 10.09 7.93 -40.82 -0.32 9.77 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.09 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 409.67 15.07 6.17 6.17 Total: -1.00 -31.96 409.67 -9.77 -41.73 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -8.20 Total: 10.79 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.98 Total: -4.85 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.87 Total: -59.94 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.14 Total: -11.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.96 -9.77 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021120294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.845 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds