Wall clock time and date at job start Tue Mar 31 2020 19:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47457 * 2 1 4 4 C 1.46891 * 111.00146 * 66.04559 * 3 2 1 5 5 C 1.52995 * 109.47468 * 199.63471 * 4 3 2 6 6 C 1.46903 * 110.99993 * 190.00273 * 3 2 1 7 7 C 1.50698 * 109.47203 * 75.64719 * 6 3 2 8 8 C 1.35135 * 125.61566 * 84.85298 * 7 6 3 9 9 C 1.40362 * 107.11692 * 179.97438 * 8 7 6 10 10 C 1.36548 * 106.70463 * 0.02562 * 9 8 7 11 11 C 1.46661 * 125.98160 * 179.97438 * 10 9 8 12 12 O 1.21688 * 120.00587 * 0.26783 * 11 10 9 13 13 N 1.34784 * 119.99431 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99473 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.85604 * 336.19487 * 14 13 11 16 16 C 1.53782 * 113.61275 * 107.50587 * 14 13 11 17 17 C 1.53779 * 87.08054 * 89.11454 * 16 14 13 18 18 H 1.09009 * 113.61521 * 270.87932 * 17 16 14 19 19 N 1.46506 * 113.69107 * 139.99730 * 17 16 14 20 20 C 1.36929 * 120.00135 * 107.46300 * 19 17 16 21 21 H 1.07998 * 120.00677 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00141 * 180.02562 * 20 19 17 23 23 N 1.31628 * 119.99489 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00413 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47075 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47099 * 120.00032 * 24 22 20 27 27 H 1.48501 * 109.47175 * 240.00062 * 24 22 20 28 28 C 1.53773 * 87.08292 * 25.43362 * 17 16 14 29 29 O 1.33931 * 125.62019 * 265.11697 * 7 6 3 30 30 H 1.08999 * 109.46469 * 300.00074 * 1 2 3 31 31 H 1.08997 * 109.46716 * 59.99613 * 1 2 3 32 32 H 1.08989 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46990 * 239.99974 * 2 1 3 34 34 H 1.09000 * 109.47189 * 120.00250 * 2 1 3 35 35 H 1.08998 * 109.47425 * 319.64037 * 4 3 2 36 36 H 1.09008 * 109.47002 * 79.63761 * 4 3 2 37 37 H 1.09004 * 109.47506 * 174.83021 * 5 4 3 38 38 H 1.09007 * 109.46819 * 294.82942 * 5 4 3 39 39 H 1.08999 * 109.46996 * 54.82926 * 5 4 3 40 40 H 1.09004 * 109.47113 * 315.64677 * 6 3 2 41 41 H 1.09002 * 109.47283 * 195.64919 * 6 3 2 42 42 H 1.07996 * 126.43934 * 359.97341 * 8 7 6 43 43 H 1.07999 * 126.64558 * 179.97438 * 9 8 7 44 44 H 0.96994 * 120.00389 * 359.97438 * 13 11 10 45 45 H 1.08999 * 113.61511 * 203.66371 * 16 14 13 46 46 H 1.08998 * 113.61244 * 334.56817 * 16 14 13 47 47 H 0.97000 * 119.99566 * 287.45733 * 19 17 16 48 48 H 0.96994 * 119.99563 * 179.97438 * 23 22 20 49 49 H 1.09005 * 113.61160 * 220.02054 * 28 17 16 50 50 H 1.08996 * 113.69317 * 89.12672 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0669 1.2532 5 6 1.7406 3.5812 1.0466 6 6 3.4686 1.4310 -0.2382 7 6 3.7462 1.1750 -1.6971 8 6 3.7273 2.1056 -2.6769 9 6 4.0395 1.4482 -3.8771 10 6 4.2350 0.1333 -3.5650 11 6 4.5825 -0.9340 -4.5091 12 8 4.7263 -0.6786 -5.6901 13 7 4.7483 -2.1966 -4.0675 14 6 5.0948 -3.2627 -5.0106 15 1 4.7960 -3.0363 -6.0340 16 6 6.5485 -3.7482 -4.8844 17 6 6.0375 -4.7603 -3.8455 18 1 6.0374 -4.3765 -2.8252 19 7 6.6596 -6.0821 -3.9558 20 6 7.5690 -6.4913 -3.0175 21 1 7.8281 -5.8395 -2.1962 22 6 8.1589 -7.7435 -3.1223 23 7 7.8436 -8.5377 -4.1235 24 14 9.4001 -8.3015 -1.8427 25 1 9.5787 -7.2326 -0.8273 26 1 8.9071 -9.5356 -1.1801 27 1 10.7007 -8.5800 -2.5031 28 6 4.6691 -4.6636 -4.5402 29 8 4.0474 -0.0130 -2.2371 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.6594 1.7872 1.5495 36 1 2.3720 1.7738 2.0342 37 1 1.3933 4.0874 1.9474 38 1 2.7707 3.8724 0.8405 39 1 1.1080 3.8628 0.2049 40 1 3.9604 0.6676 0.3646 41 1 3.8511 2.4138 0.0375 42 1 3.5124 3.1573 -2.5586 43 1 4.1105 1.8955 -4.8575 44 1 4.6382 -2.3993 -3.1254 45 1 6.9345 -4.2117 -5.7923 46 1 7.2242 -3.0002 -4.4696 47 1 6.4272 -6.6675 -4.6936 48 1 8.2560 -9.4125 -4.1969 49 1 3.8274 -4.6545 -3.8476 50 1 4.5397 -5.3768 -5.3542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021120294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:42 Heat of formation + Delta-G solvation = -4.984945 kcal Electronic energy + Delta-G solvation = -28574.502983 eV Core-core repulsion = 24603.666180 eV Total energy + Delta-G solvation = -3970.836803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.75151 -41.13969 -39.35360 -39.02131 -35.84948 -34.47123 -33.96281 -32.78004 -32.59101 -31.81158 -29.75157 -27.11528 -26.58237 -26.22666 -24.30090 -23.97410 -23.22068 -22.76334 -21.56567 -21.19636 -20.43612 -19.56072 -19.03538 -17.63615 -17.49570 -17.10080 -16.72324 -16.39235 -16.33482 -15.97873 -15.73117 -15.46564 -15.35592 -15.12492 -14.76672 -14.40875 -14.14375 -13.96251 -13.79912 -13.62935 -13.50779 -13.42230 -13.34516 -13.10390 -12.86222 -12.70857 -12.62947 -12.54623 -12.35444 -12.12506 -11.96206 -11.90201 -11.79464 -11.53370 -11.46001 -11.24864 -11.02217 -10.87599 -10.23448 -9.59330 -9.37266 -9.00670 -7.96124 -5.24673 -0.05532 1.30292 1.46895 1.47498 1.50392 1.57360 2.05173 2.07870 2.55324 2.94765 3.35015 3.47274 3.64283 3.77229 3.81941 3.92711 3.94267 3.99934 4.13403 4.25686 4.28428 4.28856 4.29697 4.44256 4.55768 4.57460 4.61003 4.67062 4.72334 4.81455 4.85275 4.87825 4.88612 4.93095 5.00618 5.07775 5.12079 5.14946 5.15910 5.17638 5.32549 5.39311 5.45721 5.48489 5.60664 5.81729 5.98884 6.07962 6.25969 6.38931 6.94533 7.32334 8.08145 8.31324 9.27170 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.002296 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.542317 B =12189.739087 C =13400.515129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.541 5.541 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.129 3.871 7 C 0.030 3.970 8 C -0.198 4.198 9 C -0.118 4.118 10 C -0.100 4.100 11 C 0.604 3.396 12 O -0.558 6.558 13 N -0.688 5.688 14 C 0.132 3.868 15 H 0.099 0.901 16 C -0.171 4.171 17 C 0.153 3.847 18 H 0.079 0.921 19 N -0.726 5.726 20 C -0.243 4.243 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.972 3.028 25 H -0.266 1.266 26 H -0.293 1.293 27 H -0.295 1.295 28 C -0.141 4.141 29 O -0.170 6.170 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.131 0.869 42 H 0.181 0.819 43 H 0.164 0.836 44 H 0.413 0.587 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.375 0.625 48 H 0.251 0.749 49 H 0.084 0.916 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.644 26.565 11.486 32.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.267 5.267 4 C -0.082 4.082 5 C -0.203 4.203 6 C 0.002 3.998 7 C -0.023 4.023 8 C -0.218 4.218 9 C -0.139 4.139 10 C -0.152 4.152 11 C 0.392 3.608 12 O -0.439 6.439 13 N -0.337 5.337 14 C 0.026 3.974 15 H 0.117 0.883 16 C -0.213 4.213 17 C 0.043 3.957 18 H 0.097 0.903 19 N -0.363 5.363 20 C -0.375 4.375 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.190 1.190 26 H -0.220 1.220 27 H -0.223 1.223 28 C -0.181 4.181 29 O -0.066 6.066 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.149 0.851 42 H 0.198 0.802 43 H 0.182 0.818 44 H 0.250 0.750 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.208 0.792 48 H 0.060 0.940 49 H 0.103 0.897 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.638 26.652 10.622 32.676 hybrid contribution 1.187 -1.421 0.798 2.016 sum -14.451 25.232 11.420 31.239 Atomic orbital electron populations 1.21774 0.93852 1.02079 1.02461 1.22146 0.96982 0.88517 1.00563 1.62011 1.11769 1.16371 1.36575 1.22250 1.01821 0.95358 0.88743 1.21782 1.02333 0.93880 1.02340 1.20746 0.89558 1.04286 0.85225 1.23126 0.99992 0.81865 0.97316 1.21791 1.07439 1.02254 0.90307 1.22209 0.98898 0.91512 1.01271 1.21757 1.15368 0.96440 0.81671 1.16750 0.76431 0.81556 0.86056 1.90844 1.53753 1.82611 1.16673 1.45527 1.69149 1.06718 1.12353 1.21629 0.95959 0.86181 0.93622 0.88288 1.24163 0.95979 0.99566 1.01599 1.21939 0.92112 0.85152 0.96515 0.90335 1.42576 1.48765 1.15140 1.29844 1.19715 1.15258 0.98677 1.03819 0.90542 1.25581 1.03162 0.97496 1.00698 1.69821 1.48240 1.10154 1.33703 0.85091 0.78300 0.77898 0.78579 1.18995 1.21984 1.22275 1.23684 0.98380 0.94671 1.01327 1.83988 1.68100 1.34331 1.20202 0.91456 0.92734 0.91807 0.92351 0.94066 0.89688 0.93698 0.91151 0.92309 0.92448 0.92121 0.85076 0.80173 0.81817 0.75016 0.90496 0.92683 0.79238 0.94028 0.89709 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.88 71.98 0.71 -1.02 16 2 C 0.05 0.63 5.50 86.30 0.47 1.11 16 3 N -0.54 -6.59 4.36 -900.81 -3.92 -10.51 16 4 C 0.04 0.37 5.55 86.30 0.48 0.85 16 5 C -0.15 -0.95 9.96 71.98 0.72 -0.23 16 6 C 0.13 1.54 5.34 85.56 0.46 2.00 16 7 C 0.03 0.53 6.15 24.97 0.15 0.68 16 8 C -0.20 -3.38 10.77 22.07 0.24 -3.14 16 9 C -0.12 -2.60 10.62 22.39 0.24 -2.36 16 10 C -0.10 -2.55 7.13 24.08 0.17 -2.38 16 11 C 0.60 18.00 7.79 86.44 0.67 18.67 16 12 O -0.56 -19.99 16.47 -4.31 -0.07 -20.06 16 13 N -0.69 -18.83 5.26 -444.01 -2.33 -21.16 16 14 C 0.13 3.98 4.32 45.52 0.20 4.17 16 15 H 0.10 3.09 7.47 -2.39 -0.02 3.07 16 16 C -0.17 -6.07 7.68 31.12 0.24 -5.83 16 17 C 0.15 5.82 4.35 45.51 0.20 6.02 16 18 H 0.08 2.90 8.10 -2.38 -0.02 2.88 16 19 N -0.73 -36.06 5.40 -320.44 -1.73 -37.79 16 20 C -0.24 -13.34 9.97 84.04 0.84 -12.51 16 21 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 23 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 24 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 C -0.14 -4.34 7.58 31.12 0.24 -4.11 16 29 O -0.17 -3.82 10.03 -4.96 -0.05 -3.87 16 30 H 0.07 0.64 6.25 -2.39 -0.01 0.62 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 1.04 7.12 -2.39 -0.02 1.02 16 34 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 35 H 0.08 0.66 5.88 -2.39 -0.01 0.65 16 36 H 0.04 0.33 8.00 -2.38 -0.02 0.31 16 37 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 38 H 0.06 0.33 6.89 -2.38 -0.02 0.31 16 39 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.06 0.72 8.00 -2.38 -0.02 0.70 16 41 H 0.13 0.97 6.56 -2.39 -0.02 0.95 16 42 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 44 H 0.41 9.90 8.46 -92.71 -0.78 9.12 16 45 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.38 20.00 7.93 -92.71 -0.73 19.27 16 48 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 49 H 0.08 2.29 8.14 -2.38 -0.02 2.28 16 50 H 0.09 2.94 8.12 -2.39 -0.02 2.92 16 Total: -1.00 -68.78 409.67 0.12 -68.66 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.57 Total: 37.62 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 6.49 Total: -2.02 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -7.71 Total: -128.30 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.12 Total: -23.94 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -68.78 0.12 -68.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021120294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.672 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds