Wall clock time and date at job start Tue Mar 31 2020 18:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47225 * 2 1 4 4 C 1.50702 * 109.46722 * 119.99793 * 2 1 3 5 5 O 1.21282 * 120.00097 * 107.40800 * 4 2 1 6 6 N 1.34780 * 119.99693 * 287.40722 * 4 2 1 7 7 C 1.47168 * 120.70856 * 185.21749 * 6 4 2 8 8 C 1.53880 * 108.03484 * 132.73624 * 7 6 4 9 9 H 1.08998 * 112.09830 * 181.90916 * 8 7 6 10 10 C 1.54543 * 108.36808 * 306.25587 * 8 7 6 11 11 C 1.54830 * 104.74694 * 89.16682 * 10 8 7 12 12 C 1.54547 * 104.74338 * 0.02562 * 11 10 8 13 13 H 1.09000 * 112.68223 * 146.81044 * 12 11 10 14 14 C 1.47157 * 120.71442 * 5.19818 * 6 4 2 15 15 N 1.48310 * 104.35844 * 24.82035 * 12 11 10 16 16 C 1.36930 * 128.07715 * 139.07933 * 15 12 11 17 17 H 1.07999 * 120.00126 * 344.62120 * 16 15 12 18 18 C 1.38817 * 120.00008 * 164.61476 * 16 15 12 19 19 N 1.31620 * 119.99643 * 350.85376 * 18 16 15 20 20 Si 1.86799 * 119.99880 * 170.84942 * 18 16 15 21 21 H 1.48503 * 109.47024 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47183 * 300.00144 * 20 18 16 23 23 H 1.48501 * 109.47228 * 60.00291 * 20 18 16 24 24 N 1.46499 * 109.46739 * 239.99339 * 2 1 3 25 25 C 1.45753 * 117.94318 * 119.74638 * 24 2 1 26 26 C 1.53097 * 110.39002 * 160.74255 * 25 24 2 27 27 C 1.53349 * 108.52754 * 51.10947 * 26 25 24 28 28 C 1.53077 * 108.42520 * 292.31258 * 27 26 25 29 29 C 1.33352 * 117.94728 * 300.00255 * 24 2 1 30 30 O 1.21283 * 118.24841 * 2.24600 * 29 24 2 31 31 H 1.09004 * 109.46824 * 66.84027 * 1 2 3 32 32 H 1.08993 * 109.47456 * 186.84620 * 1 2 3 33 33 H 1.09001 * 109.47108 * 306.85162 * 1 2 3 34 34 H 1.09003 * 109.74459 * 13.10216 * 7 6 4 35 35 H 1.09000 * 109.78864 * 252.40008 * 7 6 4 36 36 H 1.09004 * 110.36804 * 208.13783 * 10 8 7 37 37 H 1.09000 * 110.36580 * 330.44783 * 10 8 7 38 38 H 1.08998 * 110.30770 * 241.24695 * 11 10 8 39 39 H 1.09003 * 110.61337 * 118.91199 * 11 10 8 40 40 H 1.09008 * 109.74956 * 346.89821 * 14 6 4 41 41 H 1.09006 * 109.75089 * 107.57653 * 14 6 4 42 42 H 0.97001 * 119.99494 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.29804 * 281.23139 * 25 24 2 44 44 H 1.09002 * 109.30136 * 40.60940 * 25 24 2 45 45 H 1.09001 * 109.80400 * 291.32563 * 26 25 24 46 46 H 1.08992 * 109.68382 * 170.82580 * 26 25 24 47 47 H 1.08996 * 109.67121 * 172.58246 * 27 26 25 48 48 H 1.08996 * 109.70342 * 52.06169 * 27 26 25 49 49 H 1.08997 * 109.39938 * 288.77167 * 28 27 26 50 50 H 1.08993 * 109.33010 * 168.98714 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5307 -1.8119 1.1339 6 7 1.9276 -0.1216 2.4384 7 6 2.5142 -0.7488 3.6336 8 6 3.3001 0.3293 4.4002 9 1 3.7924 -0.0737 5.2853 10 6 4.3014 0.9882 3.4247 11 6 3.5170 2.1611 2.7874 12 6 2.1173 2.0985 3.4396 13 1 1.6688 3.0837 3.5675 14 6 1.2248 1.1623 2.5903 15 7 2.3456 1.4141 4.7354 16 6 1.7982 1.7107 5.9550 17 1 1.3127 2.6625 6.1120 18 6 1.8672 0.7878 6.9896 19 7 2.2940 -0.4347 6.7536 20 14 1.3545 1.2809 8.7168 21 1 1.5215 0.1236 9.6322 22 1 2.2036 2.4065 9.1829 23 1 -0.0687 1.7049 8.7087 24 7 2.0183 -0.6908 -1.1961 25 6 2.8482 0.0618 -2.1284 26 6 3.6413 -0.8918 -3.0260 27 6 2.6684 -1.9065 -3.6388 28 6 2.1400 -2.8070 -2.5194 29 6 1.6712 -1.9670 -1.3662 30 8 0.9374 -2.4766 -0.5459 31 1 -0.3633 0.4042 -0.9449 32 1 -0.3634 -1.0202 0.1225 33 1 -0.3633 0.6163 0.8223 34 1 3.1870 -1.5527 3.3349 35 1 1.7221 -1.1478 4.2673 36 1 5.1708 1.3600 3.9671 37 1 4.6077 0.2768 2.6577 38 1 3.4398 2.0228 1.7089 39 1 3.9983 3.1125 3.0136 40 1 1.0549 1.6075 1.6099 41 1 0.2706 1.0028 3.0926 42 1 2.3419 -1.0797 7.4765 43 1 2.2123 0.6971 -2.7449 44 1 3.5428 0.6877 -1.5682 45 1 4.3924 -1.4161 -2.4352 46 1 4.1295 -0.3274 -3.8204 47 1 3.1886 -2.5112 -4.3815 48 1 1.8378 -1.3810 -4.1099 49 1 2.9359 -3.4717 -2.1833 50 1 1.3076 -3.4009 -2.8967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029595708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:19 Heat of formation + Delta-G solvation = -42.921975 kcal Electronic energy + Delta-G solvation = -31870.020558 eV Core-core repulsion = 27897.538682 eV Total energy + Delta-G solvation = -3972.481876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16859 -40.97788 -39.06022 -37.36350 -35.79538 -35.27139 -34.14860 -32.44790 -31.36757 -30.97106 -30.32937 -27.95677 -26.01959 -25.50652 -25.32183 -24.77907 -23.20737 -21.32923 -21.23410 -20.36683 -19.24608 -18.76298 -17.97703 -17.70526 -17.12082 -16.71884 -16.64758 -16.52231 -15.81353 -15.58890 -15.28028 -15.00444 -14.80754 -14.67739 -14.62698 -14.44876 -14.38352 -14.14211 -13.56038 -13.53144 -13.25958 -13.14324 -13.01655 -12.92159 -12.79634 -12.68982 -12.56194 -12.52941 -12.01546 -11.95505 -11.82508 -11.79786 -11.75090 -11.50006 -11.44782 -11.13734 -10.84501 -10.61868 -10.40900 -9.73580 -9.54923 -8.69192 -7.84604 -5.20722 1.48137 1.49807 1.56130 1.65806 1.76071 2.01868 2.33063 2.51435 3.34780 3.45871 3.53582 3.72890 3.87617 3.93330 3.98273 4.01959 4.07722 4.12767 4.14463 4.25982 4.30922 4.38331 4.52434 4.56020 4.58837 4.63297 4.69836 4.73970 4.78429 4.87496 4.91219 4.97363 4.98122 5.07310 5.09252 5.10659 5.15336 5.17649 5.25181 5.30478 5.39725 5.41743 5.52817 5.54020 5.58378 5.85778 6.23009 6.59293 6.66344 7.05256 7.26783 7.43395 7.73942 8.52531 9.26634 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.003362 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.264390 B = 8325.720582 C = 8573.028118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 H 0.144 0.856 4 C 0.496 3.504 5 O -0.579 6.579 6 N -0.594 5.594 7 C 0.134 3.866 8 C 0.167 3.833 9 H 0.074 0.926 10 C -0.125 4.125 11 C -0.106 4.106 12 C 0.127 3.873 13 H 0.100 0.900 14 C 0.096 3.904 15 N -0.605 5.605 16 C -0.230 4.230 17 H 0.086 0.914 18 C -0.061 4.061 19 N -0.941 5.941 20 Si 0.973 3.027 21 H -0.303 1.303 22 H -0.278 1.278 23 H -0.278 1.278 24 N -0.593 5.593 25 C 0.104 3.896 26 C -0.133 4.133 27 C -0.113 4.113 28 C -0.131 4.131 29 C 0.510 3.490 30 O -0.586 6.586 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.028 0.972 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.045 0.955 42 H 0.244 0.756 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 7.266 -24.477 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.162 0.838 4 C 0.284 3.716 5 O -0.459 6.459 6 N -0.327 5.327 7 C 0.009 3.991 8 C 0.059 3.941 9 H 0.092 0.908 10 C -0.165 4.165 11 C -0.145 4.145 12 C 0.020 3.980 13 H 0.118 0.882 14 C -0.028 4.028 15 N -0.327 5.327 16 C -0.359 4.359 17 H 0.104 0.896 18 C -0.255 4.255 19 N -0.589 5.589 20 Si 0.802 3.198 21 H -0.230 1.230 22 H -0.204 1.204 23 H -0.204 1.204 24 N -0.326 5.326 25 C -0.017 4.017 26 C -0.171 4.171 27 C -0.150 4.150 28 C -0.170 4.170 29 C 0.300 3.700 30 O -0.466 6.466 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.135 0.865 47 H 0.114 0.886 48 H 0.102 0.898 49 H 0.107 0.893 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.894 6.355 -23.884 24.787 hybrid contribution -0.351 -0.893 2.002 2.220 sum 1.544 5.462 -21.882 22.606 Atomic orbital electron populations 1.22162 0.92111 1.03095 1.04258 1.21023 0.96693 0.97079 0.82747 0.83815 1.21522 0.78638 0.85944 0.85512 1.90625 1.47313 1.21478 1.86451 1.48141 1.54822 1.23024 1.06678 1.21818 0.96406 0.95843 0.84992 1.21669 0.89438 0.88398 0.94569 0.90823 1.22560 0.97914 0.98092 0.97898 1.22473 0.95010 0.97731 0.99283 1.22481 0.94826 0.95458 0.85274 0.88183 1.22854 0.94906 0.83451 1.01570 1.45383 1.49477 1.34161 1.03647 1.19322 1.30439 0.99039 0.87106 0.89648 1.25600 1.02562 0.95230 1.02080 1.70065 1.53573 1.03879 1.31393 0.85245 0.78162 0.76359 0.80048 1.22986 1.20399 1.20428 1.47295 1.51742 1.11368 1.22155 1.21863 0.93889 0.94508 0.91457 1.21936 0.97702 0.97776 0.99671 1.21657 0.99866 0.97245 0.96264 1.21669 1.03057 0.98449 0.93864 1.20717 0.79840 0.82147 0.87319 1.90681 1.38958 1.71096 1.45822 0.88894 0.93581 0.90167 0.93775 0.95318 0.92579 0.93114 0.90067 0.90614 0.86671 0.93687 0.94648 0.88493 0.89830 0.92645 0.86487 0.88644 0.89850 0.89321 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 8.62 71.98 0.62 -3.41 16 2 C 0.13 3.47 2.17 44.25 0.10 3.57 16 3 H 0.14 2.57 6.78 -2.39 -0.02 2.55 16 4 C 0.50 19.10 6.53 87.66 0.57 19.67 16 5 O -0.58 -27.85 13.41 19.05 0.26 -27.59 16 6 N -0.59 -23.53 2.28 -813.30 -1.86 -25.39 16 7 C 0.13 6.58 5.80 86.55 0.50 7.08 16 8 C 0.17 7.95 3.09 45.46 0.14 8.09 16 9 H 0.07 4.13 6.36 -2.39 -0.02 4.12 16 10 C -0.13 -4.71 6.23 31.74 0.20 -4.51 16 11 C -0.11 -3.15 6.24 31.75 0.20 -2.95 16 12 C 0.13 4.40 4.32 45.76 0.20 4.59 16 13 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 14 C 0.10 3.15 4.75 86.85 0.41 3.56 16 15 N -0.61 -28.59 2.80 -635.08 -1.78 -30.37 16 16 C -0.23 -12.09 10.37 84.04 0.87 -11.22 16 17 H 0.09 4.22 7.85 -2.91 -0.02 4.20 16 18 C -0.06 -3.36 5.42 84.86 0.46 -2.90 16 19 N -0.94 -55.75 10.35 21.65 0.22 -55.53 16 20 Si 0.97 45.09 29.56 68.60 2.03 47.12 16 21 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 N -0.59 -14.21 2.69 -806.46 -2.17 -16.38 16 25 C 0.10 1.35 6.26 86.55 0.54 1.89 16 26 C -0.13 -1.41 6.03 30.74 0.19 -1.23 16 27 C -0.11 -1.26 6.03 30.74 0.19 -1.07 16 28 C -0.13 -2.71 6.03 29.71 0.18 -2.53 16 29 C 0.51 15.41 6.12 87.71 0.54 15.95 16 30 O -0.59 -24.43 12.54 19.04 0.24 -24.19 16 31 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.05 1.59 6.05 -2.39 -0.01 1.58 16 33 H 0.08 1.87 6.04 -2.39 -0.01 1.86 16 34 H 0.04 2.28 7.16 -2.39 -0.02 2.26 16 35 H 0.03 1.65 7.77 -2.39 -0.02 1.63 16 36 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.05 1.89 7.86 -2.39 -0.02 1.87 16 38 H 0.08 1.91 7.87 -2.39 -0.02 1.90 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.12 2.58 4.91 -2.38 -0.01 2.56 16 41 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.96 8.03 -2.39 -0.02 0.94 16 45 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 46 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 49 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -81.95 371.60 3.77 -78.18 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.93 Total: 19.57 kcal Atomic # 6 Polarization: 28.69 SS G_CDS: 5.90 Total: 34.58 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -5.58 Total: -127.67 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: 0.49 Total: -51.79 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -81.95 3.77 -78.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029595708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.257 kcal (2) G-P(sol) polarization free energy of solvation -81.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds