Wall clock time and date at job start Tue Mar 31 2020 19:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47495 * 2 1 4 4 C 1.46768 * 124.34838 * 89.99621 * 3 2 1 5 5 C 1.54477 * 105.46954 * 163.00831 * 4 3 2 6 6 H 1.09007 * 110.96906 * 267.25945 * 5 4 3 7 7 C 1.50700 * 110.96918 * 143.53892 * 5 4 3 8 8 O 1.21274 * 120.00388 * 359.97438 * 7 5 4 9 9 N 1.34782 * 119.99869 * 180.02562 * 7 5 4 10 10 C 1.46887 * 120.45980 * 179.97438 * 9 7 5 11 11 C 1.53362 * 108.74254 * 124.34166 * 10 9 7 12 12 C 1.52553 * 109.12757 * 52.25796 * 11 10 9 13 13 C 1.52952 * 114.06226 * 75.54016 * 12 11 10 14 14 N 1.47153 * 87.85665 * 139.44194 * 13 12 11 15 15 C 1.36941 * 136.00796 * 153.33159 * 14 13 12 16 16 H 1.08005 * 119.99637 * 4.12604 * 15 14 13 17 17 C 1.38806 * 120.00431 * 184.12470 * 15 14 13 18 18 N 1.31616 * 120.00231 * 6.14727 * 17 15 14 19 19 Si 1.86808 * 120.00077 * 186.15260 * 17 15 14 20 20 H 1.48497 * 109.47106 * 84.97759 * 19 17 15 21 21 H 1.48506 * 109.46824 * 324.97912 * 19 17 15 22 22 H 1.48499 * 109.47099 * 204.98141 * 19 17 15 23 23 C 1.47163 * 87.99742 * 333.59331 * 14 13 12 24 24 C 1.52559 * 113.43126 * 302.67014 * 12 11 10 25 25 C 1.46884 * 120.46294 * 359.96713 * 9 7 5 26 26 C 1.54625 * 101.76969 * 25.41291 * 5 4 3 27 27 C 1.34416 * 124.34673 * 270.02368 * 3 2 1 28 28 O 1.21276 * 124.94633 * 0.38206 * 27 3 2 29 29 H 1.08996 * 109.47578 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47234 * 300.00711 * 1 2 3 31 31 H 1.09002 * 109.47043 * 60.00076 * 1 2 3 32 32 H 1.09002 * 109.47234 * 239.99289 * 2 1 3 33 33 H 1.09006 * 109.46560 * 119.99913 * 2 1 3 34 34 H 1.09002 * 110.24407 * 44.00882 * 4 3 2 35 35 H 1.08998 * 110.31680 * 282.04231 * 4 3 2 36 36 H 1.08999 * 109.59696 * 4.56132 * 10 9 7 37 37 H 1.09002 * 109.71667 * 244.18999 * 10 9 7 38 38 H 1.08996 * 109.52764 * 292.36275 * 11 10 9 39 39 H 1.08996 * 109.53013 * 172.15309 * 11 10 9 40 40 H 1.09000 * 113.49361 * 24.69309 * 13 12 11 41 41 H 1.09005 * 113.55177 * 254.19779 * 13 12 11 42 42 H 0.96999 * 120.00241 * 179.97438 * 18 17 15 43 43 H 1.09007 * 113.49095 * 141.15699 * 23 14 13 44 44 H 1.08998 * 113.49282 * 271.65854 * 23 14 13 45 45 H 1.08998 * 109.52753 * 177.21579 * 24 12 11 46 46 H 1.08999 * 109.52880 * 297.42424 * 24 12 11 47 47 H 1.08995 * 109.59072 * 355.43580 * 25 9 7 48 48 H 1.09006 * 109.58506 * 115.72266 * 25 9 7 49 49 H 1.09005 * 110.48613 * 93.87985 * 26 5 4 50 50 H 1.08995 * 110.49003 * 216.52511 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1741 3.3443 0.7486 6 1 4.2329 3.1040 0.8451 7 6 2.8369 4.5989 1.5124 8 8 1.9704 4.5781 2.3606 9 7 3.4977 5.7444 1.2521 10 6 3.1769 6.9733 1.9900 11 6 4.4593 7.5063 2.6408 12 6 5.5481 7.6218 1.5785 13 6 5.3785 8.8167 0.6390 14 7 6.8342 9.0165 0.7200 15 6 7.7999 9.5622 -0.0831 16 1 7.5236 10.0400 -1.0115 17 6 9.1338 9.5013 0.2959 18 7 9.4840 8.8157 1.3635 19 14 10.4321 10.3925 -0.7090 20 1 10.5175 11.8068 -0.2646 21 1 10.0628 10.3468 -2.1467 22 1 11.7479 9.7322 -0.5148 23 6 6.7980 8.3667 2.0399 24 6 5.8413 6.3057 0.8647 25 6 4.5487 5.7813 0.2266 26 6 2.7689 3.4756 -0.7378 27 6 2.2708 2.0963 -1.1098 28 8 2.1212 1.6944 -2.2442 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 2.8327 1.5531 1.9382 35 1 1.3644 2.5305 1.6445 36 1 2.4392 6.7541 2.7619 37 1 2.7773 7.7204 1.3043 38 1 4.7840 6.8193 3.4222 39 1 4.2673 8.4879 3.0739 40 1 4.8030 9.6336 1.0744 41 1 5.0325 8.5417 -0.3574 42 1 10.4162 8.7728 1.6282 43 1 7.6490 7.7111 2.2249 44 1 6.6126 9.0598 2.8604 45 1 6.5894 6.4706 0.0893 46 1 6.2148 5.5766 1.5837 47 1 4.7146 4.7770 -0.1630 48 1 4.2444 6.4424 -0.5849 49 1 1.9737 4.2121 -0.8529 50 1 3.6319 3.7464 -1.3460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035721072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:41 Heat of formation + Delta-G solvation = -6.234195 kcal Electronic energy + Delta-G solvation = -30063.636711 eV Core-core repulsion = 26092.745737 eV Total energy + Delta-G solvation = -3970.890975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25203 -40.04934 -38.83463 -36.59096 -35.88546 -34.33132 -32.57118 -31.33187 -30.48155 -29.79606 -28.03852 -27.00086 -25.06639 -24.57739 -23.63740 -23.17970 -22.58103 -21.12210 -19.87823 -19.30234 -18.17792 -17.04145 -16.99698 -16.73235 -16.30830 -15.94509 -15.32636 -15.17383 -14.89994 -14.65969 -14.36390 -14.01212 -13.86584 -13.81895 -13.75692 -13.58716 -13.51641 -12.93529 -12.73261 -12.49805 -12.36001 -12.24710 -12.14641 -11.84760 -11.77502 -11.59448 -11.40287 -11.13315 -11.05736 -10.89830 -10.86336 -10.44455 -10.30680 -10.24024 -9.75920 -9.74576 -9.66276 -9.25712 -9.03149 -8.84789 -8.52048 -6.89125 -5.79487 -3.12706 2.30499 2.42981 2.61151 2.94192 3.36473 3.41655 3.43131 3.89655 4.02186 4.33251 4.42561 4.54557 4.66241 4.77248 4.83374 4.93844 4.98778 5.02732 5.10065 5.15175 5.23630 5.28587 5.32989 5.35932 5.39980 5.43737 5.52105 5.58132 5.59484 5.61426 5.77785 5.81812 5.83129 5.94363 6.09817 6.21734 6.23444 6.30455 6.43728 6.53819 6.57813 6.75016 6.78556 6.78793 7.18380 7.32980 7.35144 7.54713 7.88239 7.96007 8.02600 9.00303 9.67621 10.62028 11.36462 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.002556 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.793410 B =10950.093423 C =11763.671616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.125 4.125 6 H 0.119 0.881 7 C 0.527 3.473 8 O -0.545 6.545 9 N -0.598 5.598 10 C 0.115 3.885 11 C -0.114 4.114 12 C -0.113 4.113 13 C 0.127 3.873 14 N -0.608 5.608 15 C -0.217 4.217 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.917 5.917 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.281 1.281 22 H -0.290 1.290 23 C 0.159 3.841 24 C -0.095 4.095 25 C 0.103 3.897 26 C -0.145 4.145 27 C 0.521 3.479 28 O -0.530 6.530 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.036 0.964 42 H 0.253 0.747 43 H 0.076 0.924 44 H 0.021 0.979 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.109 0.891 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.338 -14.643 1.316 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.005 4.005 5 C -0.146 4.146 6 H 0.137 0.863 7 C 0.314 3.686 8 O -0.423 6.423 9 N -0.330 5.330 10 C -0.007 4.007 11 C -0.153 4.153 12 C -0.115 4.115 13 C 0.001 3.999 14 N -0.334 5.334 15 C -0.344 4.344 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.564 5.564 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.207 1.207 22 H -0.217 1.217 23 C 0.033 3.967 24 C -0.133 4.133 25 C -0.020 4.020 26 C -0.186 4.186 27 C 0.308 3.692 28 O -0.407 6.407 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.127 0.873 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.535 -14.840 1.041 21.509 hybrid contribution 0.924 0.785 -0.331 1.257 sum -14.611 -14.055 0.710 20.286 Atomic orbital electron populations 1.22168 0.95702 1.02374 1.02654 1.21357 0.94493 0.80857 1.03222 1.48372 1.65879 1.13945 1.07251 1.21989 1.00576 0.91109 0.86871 1.22230 1.02790 0.94299 0.95318 0.86268 1.19977 0.81470 0.84198 0.82964 1.90682 1.32540 1.84973 1.34115 1.48074 1.36891 1.09473 1.38540 1.21653 0.97941 0.84927 0.96211 1.21732 0.94286 1.01254 0.97992 1.22006 0.97655 0.94945 0.96865 1.22402 0.87859 0.93295 0.96352 1.45502 1.00845 1.70168 1.16838 1.18885 0.85238 1.29816 1.00452 0.90335 1.24762 0.96755 1.00671 0.98214 1.69821 1.16335 1.43748 1.26505 0.86176 0.81204 0.79294 0.79322 1.21629 1.20664 1.21661 1.22071 0.93662 0.92853 0.88116 1.21437 0.95828 0.95483 1.00533 1.22032 0.87809 1.01920 0.90210 1.22446 1.04436 0.96671 0.95008 1.20766 0.76724 0.87257 0.84405 1.90734 1.53741 1.75130 1.21050 0.91376 0.92213 0.92234 0.89935 0.90187 0.89726 0.88983 0.89358 0.91331 0.91774 0.90734 0.95192 0.94561 0.93685 0.90532 0.96132 0.89104 0.91982 0.90027 0.90740 0.87256 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.12 0.91 6.65 -4.04 -0.03 0.88 16 3 N -0.62 -5.68 2.93 -172.41 -0.51 -6.19 16 4 C 0.12 0.97 6.71 -3.12 -0.02 0.95 16 5 C -0.12 -1.07 2.51 -90.14 -0.23 -1.30 16 6 H 0.12 0.87 7.57 -51.92 -0.39 0.47 16 7 C 0.53 6.01 6.97 -10.98 -0.08 5.93 16 8 O -0.54 -7.75 14.89 5.56 0.08 -7.67 16 9 N -0.60 -6.89 2.94 -172.61 -0.51 -7.40 16 10 C 0.11 1.39 6.34 -3.64 -0.02 1.36 16 11 C -0.11 -1.54 5.31 -26.77 -0.14 -1.69 16 12 C -0.11 -1.87 0.83 -155.17 -0.13 -2.00 16 13 C 0.13 2.39 7.63 -8.23 -0.06 2.33 16 14 N -0.61 -14.72 3.55 -184.92 -0.66 -15.38 16 15 C -0.22 -5.84 10.73 -15.06 -0.16 -6.01 16 16 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 18 N -0.92 -26.36 11.44 55.49 0.63 -25.72 16 19 Si 0.91 21.62 29.56 -169.99 -5.02 16.60 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.16 3.49 6.71 -8.39 -0.06 3.43 16 24 C -0.09 -1.40 5.26 -26.75 -0.14 -1.54 16 25 C 0.10 1.14 5.76 -3.63 -0.02 1.12 16 26 C -0.15 -1.29 5.47 -26.74 -0.15 -1.44 16 27 C 0.52 5.88 8.02 -10.86 -0.09 5.80 16 28 O -0.53 -7.96 17.60 5.56 0.10 -7.87 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.87 6.96 -51.93 -0.36 0.51 16 36 H 0.09 1.10 6.97 -51.93 -0.36 0.73 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 40 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 41 H 0.04 0.65 7.54 -51.93 -0.39 0.26 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.08 1.90 6.85 -51.92 -0.36 1.55 16 44 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 45 H 0.09 1.61 7.95 -51.93 -0.41 1.20 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 0.72 4.50 -51.93 -0.23 0.49 16 48 H 0.07 0.83 7.61 -51.93 -0.40 0.44 16 49 H 0.11 0.98 7.89 -51.93 -0.41 0.57 16 50 H 0.11 0.89 6.97 -51.93 -0.36 0.53 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -33.22 389.13 -9.33 -42.54 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.28 Total: -1.52 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.04 Total: 6.73 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -1.03 Total: -54.68 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.18 Total: -15.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.22 -9.33 -42.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035721072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.308 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds