Wall clock time and date at job start Tue Mar 31 2020 19:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47495 * 2 1 4 4 C 1.46768 * 124.34838 * 89.99621 * 3 2 1 5 5 C 1.54477 * 105.46954 * 163.00831 * 4 3 2 6 6 H 1.09007 * 110.96906 * 267.25945 * 5 4 3 7 7 C 1.50700 * 110.96918 * 143.53892 * 5 4 3 8 8 O 1.21274 * 120.00388 * 359.97438 * 7 5 4 9 9 N 1.34782 * 119.99869 * 180.02562 * 7 5 4 10 10 C 1.46887 * 120.45980 * 179.97438 * 9 7 5 11 11 C 1.53362 * 108.74254 * 124.34166 * 10 9 7 12 12 C 1.52553 * 109.12757 * 52.25796 * 11 10 9 13 13 C 1.52952 * 114.06226 * 75.54016 * 12 11 10 14 14 N 1.47153 * 87.85665 * 139.44194 * 13 12 11 15 15 C 1.36941 * 136.00796 * 153.33159 * 14 13 12 16 16 H 1.08005 * 119.99637 * 4.12604 * 15 14 13 17 17 C 1.38806 * 120.00431 * 184.12470 * 15 14 13 18 18 N 1.31616 * 120.00231 * 6.14727 * 17 15 14 19 19 Si 1.86808 * 120.00077 * 186.15260 * 17 15 14 20 20 H 1.48497 * 109.47106 * 84.97759 * 19 17 15 21 21 H 1.48506 * 109.46824 * 324.97912 * 19 17 15 22 22 H 1.48499 * 109.47099 * 204.98141 * 19 17 15 23 23 C 1.47163 * 87.99742 * 333.59331 * 14 13 12 24 24 C 1.52559 * 113.43126 * 302.67014 * 12 11 10 25 25 C 1.46884 * 120.46294 * 359.96713 * 9 7 5 26 26 C 1.54625 * 101.76969 * 25.41291 * 5 4 3 27 27 C 1.34416 * 124.34673 * 270.02368 * 3 2 1 28 28 O 1.21276 * 124.94633 * 0.38206 * 27 3 2 29 29 H 1.08996 * 109.47578 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47234 * 300.00711 * 1 2 3 31 31 H 1.09002 * 109.47043 * 60.00076 * 1 2 3 32 32 H 1.09002 * 109.47234 * 239.99289 * 2 1 3 33 33 H 1.09006 * 109.46560 * 119.99913 * 2 1 3 34 34 H 1.09002 * 110.24407 * 44.00882 * 4 3 2 35 35 H 1.08998 * 110.31680 * 282.04231 * 4 3 2 36 36 H 1.08999 * 109.59696 * 4.56132 * 10 9 7 37 37 H 1.09002 * 109.71667 * 244.18999 * 10 9 7 38 38 H 1.08996 * 109.52764 * 292.36275 * 11 10 9 39 39 H 1.08996 * 109.53013 * 172.15309 * 11 10 9 40 40 H 1.09000 * 113.49361 * 24.69309 * 13 12 11 41 41 H 1.09005 * 113.55177 * 254.19779 * 13 12 11 42 42 H 0.96999 * 120.00241 * 179.97438 * 18 17 15 43 43 H 1.09007 * 113.49095 * 141.15699 * 23 14 13 44 44 H 1.08998 * 113.49282 * 271.65854 * 23 14 13 45 45 H 1.08998 * 109.52753 * 177.21579 * 24 12 11 46 46 H 1.08999 * 109.52880 * 297.42424 * 24 12 11 47 47 H 1.08995 * 109.59072 * 355.43580 * 25 9 7 48 48 H 1.09006 * 109.58506 * 115.72266 * 25 9 7 49 49 H 1.09005 * 110.48613 * 93.87985 * 26 5 4 50 50 H 1.08995 * 110.49003 * 216.52511 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1741 3.3443 0.7486 6 1 4.2329 3.1040 0.8451 7 6 2.8369 4.5989 1.5124 8 8 1.9704 4.5781 2.3606 9 7 3.4977 5.7444 1.2521 10 6 3.1769 6.9733 1.9900 11 6 4.4593 7.5063 2.6408 12 6 5.5481 7.6218 1.5785 13 6 5.3785 8.8167 0.6390 14 7 6.8342 9.0165 0.7200 15 6 7.7999 9.5622 -0.0831 16 1 7.5236 10.0400 -1.0115 17 6 9.1338 9.5013 0.2959 18 7 9.4840 8.8157 1.3635 19 14 10.4321 10.3925 -0.7090 20 1 10.5175 11.8068 -0.2646 21 1 10.0628 10.3468 -2.1467 22 1 11.7479 9.7322 -0.5148 23 6 6.7980 8.3667 2.0399 24 6 5.8413 6.3057 0.8647 25 6 4.5487 5.7813 0.2266 26 6 2.7689 3.4756 -0.7378 27 6 2.2708 2.0963 -1.1098 28 8 2.1212 1.6944 -2.2442 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 2.8327 1.5531 1.9382 35 1 1.3644 2.5305 1.6445 36 1 2.4392 6.7541 2.7619 37 1 2.7773 7.7204 1.3043 38 1 4.7840 6.8193 3.4222 39 1 4.2673 8.4879 3.0739 40 1 4.8030 9.6336 1.0744 41 1 5.0325 8.5417 -0.3574 42 1 10.4162 8.7728 1.6282 43 1 7.6490 7.7111 2.2249 44 1 6.6126 9.0598 2.8604 45 1 6.5894 6.4706 0.0893 46 1 6.2148 5.5766 1.5837 47 1 4.7146 4.7770 -0.1630 48 1 4.2444 6.4424 -0.5849 49 1 1.9737 4.2121 -0.8529 50 1 3.6319 3.7464 -1.3460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035721072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:40 Heat of formation + Delta-G solvation = -26.817671 kcal Electronic energy + Delta-G solvation = -30064.529278 eV Core-core repulsion = 26092.745737 eV Total energy + Delta-G solvation = -3971.783541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12463 -41.18598 -40.02434 -37.50763 -37.04257 -35.05751 -34.36342 -32.45216 -31.82366 -30.58958 -28.86351 -28.60641 -26.58671 -25.69982 -24.67215 -24.17526 -23.66397 -22.49203 -20.76062 -20.22534 -19.16794 -18.66294 -18.10326 -17.77718 -17.23698 -16.84498 -16.75422 -16.17451 -16.10798 -16.01914 -15.61744 -15.17374 -14.99430 -14.77368 -14.62045 -14.56751 -14.39399 -14.05984 -14.00718 -13.67202 -13.44449 -13.21250 -13.06200 -12.93157 -12.88458 -12.80589 -12.56021 -12.49181 -12.35772 -12.15763 -12.06531 -11.98499 -11.65530 -11.58626 -11.14320 -11.09902 -10.87618 -10.79388 -10.66335 -9.77500 -9.56811 -8.84729 -7.86401 -5.19705 1.46537 1.46733 1.48234 1.55356 1.55889 1.85725 2.10911 2.49161 3.11937 3.31923 3.33210 3.50685 3.56815 3.66564 3.84757 3.91072 4.04915 4.12552 4.18573 4.24091 4.25860 4.38757 4.42664 4.47852 4.54834 4.55886 4.65527 4.73979 4.75311 4.81788 4.82595 4.87976 4.90970 4.93393 4.95039 4.96664 5.13408 5.19829 5.26026 5.27916 5.33056 5.40111 5.54601 5.56830 5.61599 5.81280 6.00117 6.04328 6.42727 6.94619 7.06914 7.12878 7.64687 8.66899 9.29343 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.002556 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.793410 B =10950.093423 C =11763.671616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.615 5.615 4 C 0.120 3.880 5 C -0.117 4.117 6 H 0.142 0.858 7 C 0.531 3.469 8 O -0.571 6.571 9 N -0.598 5.598 10 C 0.120 3.880 11 C -0.105 4.105 12 C -0.084 4.084 13 C 0.129 3.871 14 N -0.638 5.638 15 C -0.222 4.222 16 H 0.082 0.918 17 C -0.066 4.066 18 N -0.949 5.949 19 Si 0.972 3.028 20 H -0.290 1.290 21 H -0.268 1.268 22 H -0.296 1.296 23 C 0.152 3.848 24 C -0.092 4.092 25 C 0.114 3.886 26 C -0.139 4.139 27 C 0.513 3.487 28 O -0.576 6.576 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.246 0.754 43 H 0.041 0.959 44 H 0.009 0.991 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.111 0.889 48 H 0.081 0.919 49 H 0.111 0.889 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.564 -15.553 1.141 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.348 5.348 4 C -0.003 4.003 5 C -0.138 4.138 6 H 0.159 0.841 7 C 0.319 3.681 8 O -0.451 6.451 9 N -0.330 5.330 10 C -0.003 4.003 11 C -0.144 4.144 12 C -0.085 4.085 13 C 0.004 3.996 14 N -0.364 5.364 15 C -0.351 4.351 16 H 0.100 0.900 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.801 3.199 20 H -0.217 1.217 21 H -0.193 1.193 22 H -0.222 1.222 23 C 0.026 3.974 24 C -0.130 4.130 25 C -0.009 4.009 26 C -0.180 4.180 27 C 0.301 3.699 28 O -0.456 6.456 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.026 0.974 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.129 0.871 48 H 0.100 0.900 49 H 0.129 0.871 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.803 -15.753 0.881 23.049 hybrid contribution 1.243 1.073 -0.212 1.656 sum -15.560 -14.680 0.670 21.402 Atomic orbital electron populations 1.22123 0.95442 1.03292 1.01524 1.21557 0.94722 0.80189 1.04121 1.48517 1.64776 1.14459 1.07065 1.22040 1.00353 0.91231 0.86676 1.22229 1.04091 0.92995 0.94508 0.84065 1.20319 0.80706 0.84571 0.82501 1.90682 1.33691 1.85352 1.35404 1.48092 1.36893 1.09496 1.38490 1.21580 0.96702 0.85439 0.96531 1.21655 0.93947 1.01836 0.96985 1.21788 0.95413 0.94766 0.96567 1.22563 0.84939 0.94373 0.97740 1.45849 1.03026 1.70096 1.17417 1.19251 0.86211 1.28773 1.00828 0.90043 1.25543 0.98790 1.01999 0.99619 1.70012 1.16035 1.45483 1.28269 0.85180 0.78389 0.77709 0.78600 1.21736 1.19256 1.22222 1.22079 0.95197 0.92790 0.87343 1.21362 0.97214 0.94705 0.99712 1.21974 0.85561 1.03624 0.89695 1.22438 1.04991 0.95281 0.95243 1.21160 0.76377 0.88179 0.84135 1.90709 1.55930 1.76176 1.22816 0.89524 0.91990 0.94566 0.90917 0.87382 0.87433 0.90013 0.89220 0.90238 0.91703 0.90304 0.94166 0.93132 0.94473 0.94076 0.97363 0.92204 0.91664 0.87103 0.90034 0.87123 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 71.98 0.74 -1.36 16 2 C 0.12 1.50 6.65 86.38 0.57 2.08 16 3 N -0.62 -10.03 2.93 -817.98 -2.40 -12.43 16 4 C 0.12 1.63 6.71 86.83 0.58 2.21 16 5 C -0.12 -1.63 2.51 -10.48 -0.03 -1.65 16 6 H 0.14 1.43 7.57 -2.38 -0.02 1.41 16 7 C 0.53 10.47 6.97 87.66 0.61 11.09 16 8 O -0.57 -14.80 14.89 -3.01 -0.04 -14.84 16 9 N -0.60 -11.92 2.94 -818.39 -2.41 -14.33 16 10 C 0.12 2.56 6.34 86.43 0.55 3.11 16 11 C -0.11 -2.66 5.31 30.57 0.16 -2.50 16 12 C -0.08 -2.69 0.83 -52.61 -0.04 -2.74 16 13 C 0.13 4.68 7.63 83.31 0.64 5.31 16 14 N -0.64 -31.16 3.55 -738.95 -2.62 -33.78 16 15 C -0.22 -12.10 10.73 84.03 0.90 -11.20 16 16 H 0.08 4.25 7.84 -2.91 -0.02 4.23 16 17 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 18 N -0.95 -56.24 11.44 21.65 0.25 -55.99 16 19 Si 0.97 45.03 29.56 68.60 2.03 47.05 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 23 C 0.15 6.82 6.71 83.20 0.56 7.38 16 24 C -0.09 -2.59 5.26 30.58 0.16 -2.43 16 25 C 0.11 2.18 5.76 86.44 0.50 2.68 16 26 C -0.14 -2.11 5.47 30.59 0.17 -1.94 16 27 C 0.51 10.84 8.02 87.90 0.71 11.55 16 28 O -0.58 -17.14 17.60 -3.02 -0.05 -17.20 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 1.12 7.93 -2.39 -0.02 1.10 16 33 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.35 6.96 -2.39 -0.02 1.34 16 36 H 0.09 1.98 6.97 -2.39 -0.02 1.96 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.95 8.09 -2.39 -0.02 1.93 16 40 H 0.04 1.41 8.06 -2.39 -0.02 1.39 16 41 H 0.05 1.70 7.54 -2.38 -0.02 1.68 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.04 2.13 6.85 -2.38 -0.02 2.11 16 44 H 0.01 0.40 8.09 -2.39 -0.02 0.38 16 45 H 0.06 2.10 7.95 -2.39 -0.02 2.08 16 46 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.11 1.52 4.50 -2.39 -0.01 1.51 16 48 H 0.08 1.53 7.61 -2.38 -0.02 1.51 16 49 H 0.11 1.70 7.89 -2.38 -0.02 1.68 16 50 H 0.13 1.59 6.97 -2.39 -0.02 1.57 16 Total: -1.00 -74.58 389.13 2.92 -71.66 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.93 Total: 11.52 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 7.24 Total: 18.34 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -7.18 Total: -116.53 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.10 Total: -32.04 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.58 2.92 -71.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035721072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.840 kcal (2) G-P(sol) polarization free energy of solvation -74.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds