Wall clock time and date at job start Tue Mar 31 2020 19:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47298 * 2 1 4 4 C 1.46759 * 124.35147 * 90.00042 * 3 2 1 5 5 C 1.54485 * 105.47303 * 196.99535 * 4 3 2 6 6 H 1.08997 * 110.96820 * 92.73827 * 5 4 3 7 7 C 1.50699 * 110.96593 * 216.46111 * 5 4 3 8 8 O 1.21274 * 120.00387 * 356.91541 * 7 5 4 9 9 N 1.34779 * 119.99466 * 176.90972 * 7 5 4 10 10 C 1.46895 * 120.45951 * 180.02562 * 9 7 5 11 11 C 1.53357 * 108.74358 * 124.34445 * 10 9 7 12 12 C 1.52557 * 109.12378 * 52.25862 * 11 10 9 13 13 C 1.52956 * 114.06186 * 75.54159 * 12 11 10 14 14 N 1.47163 * 87.85660 * 139.43960 * 13 12 11 15 15 C 1.36936 * 136.00456 * 153.33774 * 14 13 12 16 16 H 1.07992 * 120.00146 * 9.60433 * 15 14 13 17 17 C 1.38816 * 119.99770 * 189.60980 * 15 14 13 18 18 N 1.31624 * 119.99294 * 202.97694 * 17 15 14 19 19 Si 1.86801 * 120.00140 * 23.24940 * 17 15 14 20 20 H 1.48498 * 109.46970 * 269.72457 * 19 17 15 21 21 H 1.48495 * 109.47108 * 29.72435 * 19 17 15 22 22 H 1.48496 * 109.46942 * 149.72808 * 19 17 15 23 23 C 1.47175 * 87.99421 * 333.59140 * 14 13 12 24 24 C 1.52549 * 113.43433 * 302.66829 * 12 11 10 25 25 C 1.46882 * 120.46784 * 359.97438 * 9 7 5 26 26 C 1.54620 * 101.79952 * 334.60020 * 5 4 3 27 27 C 1.34416 * 124.34615 * 269.97522 * 3 2 1 28 28 O 1.21280 * 124.94783 * 359.58317 * 27 3 2 29 29 H 1.09007 * 109.46629 * 60.00132 * 1 2 3 30 30 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47092 * 300.00409 * 1 2 3 32 32 H 1.08998 * 109.47092 * 239.99591 * 2 1 3 33 33 H 1.08995 * 109.47043 * 120.00006 * 2 1 3 34 34 H 1.08993 * 110.24912 * 77.99125 * 4 3 2 35 35 H 1.09004 * 110.24696 * 315.99335 * 4 3 2 36 36 H 1.09002 * 109.59693 * 4.56416 * 10 9 7 37 37 H 1.09002 * 109.71578 * 244.19583 * 10 9 7 38 38 H 1.09000 * 109.52468 * 292.36413 * 11 10 9 39 39 H 1.08996 * 109.58429 * 172.18639 * 11 10 9 40 40 H 1.09002 * 113.49066 * 24.69417 * 13 12 11 41 41 H 1.09000 * 113.49210 * 254.18206 * 13 12 11 42 42 H 0.96993 * 120.00369 * 354.95021 * 18 17 15 43 43 H 1.09003 * 113.48448 * 141.15839 * 23 14 13 44 44 H 1.08995 * 113.48594 * 271.66072 * 23 14 13 45 45 H 1.08995 * 109.53113 * 177.22074 * 24 12 11 46 46 H 1.09006 * 109.52863 * 297.43071 * 24 12 11 47 47 H 1.09004 * 109.58745 * 355.42906 * 25 9 7 48 48 H 1.09001 * 109.59176 * 115.86214 * 25 9 7 49 49 H 1.08994 * 110.48862 * 143.45684 * 26 5 4 50 50 H 1.09004 * 110.48904 * 266.10428 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2116 5 6 2.3536 3.6345 0.7485 6 1 1.3791 4.1132 0.8449 7 6 3.4044 4.3983 1.5123 8 8 4.0261 3.8526 2.3991 9 7 3.6534 5.6879 1.2097 10 6 4.6758 6.4418 1.9473 11 6 5.6875 7.0105 0.9450 12 6 4.9384 7.7750 -0.1421 13 6 4.4199 9.1436 0.3024 14 7 4.8271 9.6635 -1.0127 15 6 4.4348 10.6889 -1.8311 16 1 3.7420 11.4339 -1.4690 17 6 4.9275 10.7705 -3.1263 18 7 4.9397 11.9274 -3.7540 19 14 5.5662 9.2372 -3.9810 20 1 7.0185 9.0877 -3.7094 21 1 4.8417 8.0466 -3.4685 22 1 5.3463 9.3584 -5.4446 23 6 5.8368 8.5940 -1.0653 24 6 3.9054 6.9272 -0.8778 25 6 2.9070 6.3587 0.1372 26 6 2.7508 3.4827 -0.7381 27 6 2.2717 2.0960 -1.1098 28 8 2.1360 1.6892 -2.2442 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 3.2499 1.8636 1.6431 35 1 1.4931 2.0269 1.9381 36 1 5.1863 5.7786 2.6456 37 1 4.2062 7.2584 2.4958 38 1 6.2515 6.1942 0.4937 39 1 6.3717 7.6853 1.4594 40 1 4.9818 9.5725 1.1321 41 1 3.3423 9.1682 0.4646 42 1 4.5381 12.7076 -3.3408 43 1 5.9538 8.1554 -2.0563 44 1 6.7880 8.8720 -0.6114 45 1 3.3761 7.5456 -1.6027 46 1 4.4068 6.1080 -1.3934 47 1 2.2525 5.6406 -0.3570 48 1 2.3120 7.1694 0.5577 49 1 2.2494 4.2359 -1.3458 50 1 3.8323 3.5561 -0.8534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035721073.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:44 Heat of formation + Delta-G solvation = 1.843214 kcal Electronic energy + Delta-G solvation = -30485.997178 eV Core-core repulsion = 26515.456466 eV Total energy + Delta-G solvation = -3970.540712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36087 -40.21732 -39.05524 -36.63992 -36.07851 -34.39036 -32.72153 -31.53315 -30.77557 -29.90211 -28.08588 -27.06686 -25.58464 -24.70323 -23.61504 -23.35657 -22.46592 -20.94919 -19.91431 -19.45257 -18.02731 -17.63898 -17.41073 -17.04918 -16.39956 -16.08894 -15.41249 -15.22820 -15.20155 -14.75133 -14.53558 -14.18688 -14.12727 -14.05263 -13.73298 -13.57602 -13.38822 -13.22935 -12.94932 -12.79670 -12.49390 -12.36245 -12.27575 -11.97071 -11.83863 -11.75454 -11.55611 -11.45148 -11.12185 -11.02817 -10.77270 -10.52061 -10.39626 -10.29744 -9.90562 -9.81303 -9.42962 -9.14606 -9.06469 -8.65878 -8.58942 -7.17943 -6.36670 -3.21864 2.27291 2.35471 2.54561 2.84769 3.40086 3.46308 3.63505 3.83434 3.96309 4.24960 4.49408 4.57316 4.58987 4.67651 4.70459 4.73251 4.77918 4.81032 4.98596 5.06496 5.10799 5.12063 5.18345 5.27329 5.30849 5.35070 5.43391 5.47682 5.49412 5.52591 5.61356 5.63113 5.77584 5.77861 5.89336 6.01537 6.10411 6.18895 6.23051 6.25805 6.32744 6.38735 6.47796 6.54053 6.75893 6.89614 7.15805 7.22340 7.86201 7.92308 8.23462 8.94871 9.51143 10.39811 11.14008 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003161 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.668772 B = 8856.645880 C = 9992.393794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.621 5.621 4 C 0.119 3.881 5 C -0.124 4.124 6 H 0.118 0.882 7 C 0.528 3.472 8 O -0.543 6.543 9 N -0.600 5.600 10 C 0.115 3.885 11 C -0.116 4.116 12 C -0.103 4.103 13 C 0.131 3.869 14 N -0.622 5.622 15 C -0.312 4.312 16 H 0.077 0.923 17 C -0.020 4.020 18 N -0.923 5.923 19 Si 1.063 2.937 20 H -0.295 1.295 21 H -0.282 1.282 22 H -0.297 1.297 23 C 0.112 3.888 24 C -0.104 4.104 25 C 0.101 3.899 26 C -0.148 4.148 27 C 0.520 3.480 28 O -0.527 6.527 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.041 0.959 42 H 0.262 0.738 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.116 0.884 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -21.385 13.148 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.004 4.004 5 C -0.146 4.146 6 H 0.136 0.864 7 C 0.315 3.685 8 O -0.421 6.421 9 N -0.332 5.332 10 C -0.007 4.007 11 C -0.155 4.155 12 C -0.105 4.105 13 C 0.005 3.995 14 N -0.350 5.350 15 C -0.438 4.438 16 H 0.094 0.906 17 C -0.220 4.220 18 N -0.564 5.564 19 Si 0.896 3.104 20 H -0.223 1.223 21 H -0.210 1.210 22 H -0.225 1.225 23 C -0.013 4.013 24 C -0.142 4.142 25 C -0.022 4.022 26 C -0.188 4.188 27 C 0.308 3.692 28 O -0.403 6.403 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.134 0.866 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.185 -22.267 11.459 25.795 hybrid contribution -0.689 0.890 1.448 1.834 sum -6.874 -21.376 12.907 25.900 Atomic orbital electron populations 1.22166 0.95659 1.02433 1.02556 1.21351 0.94410 0.80926 1.03306 1.48371 1.66000 1.14020 1.07194 1.21958 1.03397 0.88085 0.86953 1.22223 1.00424 0.96523 0.95422 0.86390 1.20006 0.83453 0.81672 0.83406 1.90689 1.51010 1.68137 1.32229 1.48073 1.38494 1.10698 1.35926 1.21635 0.89189 0.95555 0.94282 1.21759 0.97398 0.99878 0.96454 1.21893 0.97489 0.94539 0.96540 1.22356 0.97753 0.89361 0.90040 1.45799 1.36521 1.35276 1.17397 1.19926 1.28785 1.01558 0.93574 0.90569 1.25710 0.99945 1.02620 0.93706 1.70926 1.42608 0.98953 1.43924 0.83768 0.75863 0.75342 0.75446 1.22263 1.20957 1.22453 1.22570 0.92980 0.88526 0.97231 1.21539 0.96413 0.98998 0.97209 1.22037 0.94460 0.97453 0.88214 1.22538 1.04797 0.96587 0.94886 1.20789 0.76468 0.87524 0.84435 1.90747 1.53183 1.75350 1.21010 0.92141 0.91344 0.92354 0.89899 0.90191 0.89000 0.89807 0.89122 0.91132 0.91608 0.90379 0.94501 0.94032 0.92746 0.93647 0.94162 0.88931 0.91709 0.89536 0.90580 0.86606 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.16 0.38 -0.70 16 2 C 0.12 0.88 6.65 -4.04 -0.03 0.85 16 3 N -0.62 -5.54 2.93 -172.39 -0.51 -6.05 16 4 C 0.12 0.92 6.69 -3.12 -0.02 0.90 16 5 C -0.12 -0.99 2.54 -90.14 -0.23 -1.22 16 6 H 0.12 0.71 7.90 -51.93 -0.41 0.30 16 7 C 0.53 5.59 6.99 -10.98 -0.08 5.51 16 8 O -0.54 -7.27 14.92 5.56 0.08 -7.19 16 9 N -0.60 -6.37 2.94 -172.65 -0.51 -6.88 16 10 C 0.12 1.27 6.34 -3.64 -0.02 1.25 16 11 C -0.12 -1.42 5.31 -26.77 -0.14 -1.57 16 12 C -0.10 -1.59 0.83 -155.17 -0.13 -1.72 16 13 C 0.13 2.35 7.63 -8.21 -0.06 2.29 16 14 N -0.62 -14.50 3.35 -184.85 -0.62 -15.11 16 15 C -0.31 -8.71 10.95 -15.06 -0.16 -8.88 16 16 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 17 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 18 N -0.92 -28.70 13.70 55.49 0.76 -27.94 16 19 Si 1.06 26.18 25.34 -169.99 -4.31 21.87 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.29 6.55 56.52 0.37 -5.92 16 22 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 23 C 0.11 2.25 6.31 -8.37 -0.05 2.19 16 24 C -0.10 -1.44 5.25 -26.80 -0.14 -1.58 16 25 C 0.10 1.04 5.87 -3.68 -0.02 1.02 16 26 C -0.15 -1.34 5.31 -26.71 -0.14 -1.48 16 27 C 0.52 5.91 8.02 -10.83 -0.09 5.82 16 28 O -0.53 -8.06 17.59 5.56 0.10 -7.96 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.82 7.01 -51.93 -0.36 0.45 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.03 6.98 -51.93 -0.36 0.67 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 41 H 0.04 0.72 7.53 -51.93 -0.39 0.33 16 42 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 43 H 0.05 0.96 3.70 -51.93 -0.19 0.77 16 44 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 45 H 0.09 1.54 7.95 -51.93 -0.41 1.13 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.71 4.02 -51.93 -0.21 0.50 16 48 H 0.08 0.79 7.60 -51.93 -0.39 0.39 16 49 H 0.12 0.95 6.59 -51.93 -0.34 0.61 16 50 H 0.11 1.06 7.89 -51.93 -0.41 0.66 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -34.90 383.22 -8.40 -43.30 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.15 Total: -1.85 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.03 Total: 2.03 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.87 Total: -55.98 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.18 Total: -15.15 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.31 Total: 21.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.90 -8.40 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035721073.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.145 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds