Wall clock time and date at job start Tue Mar 31 2020 19:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47298 * 2 1 4 4 C 1.46759 * 124.35147 * 90.00042 * 3 2 1 5 5 C 1.54485 * 105.47303 * 196.99535 * 4 3 2 6 6 H 1.08997 * 110.96820 * 92.73827 * 5 4 3 7 7 C 1.50699 * 110.96593 * 216.46111 * 5 4 3 8 8 O 1.21274 * 120.00387 * 356.91541 * 7 5 4 9 9 N 1.34779 * 119.99466 * 176.90972 * 7 5 4 10 10 C 1.46895 * 120.45951 * 180.02562 * 9 7 5 11 11 C 1.53357 * 108.74358 * 124.34445 * 10 9 7 12 12 C 1.52557 * 109.12378 * 52.25862 * 11 10 9 13 13 C 1.52956 * 114.06186 * 75.54159 * 12 11 10 14 14 N 1.47163 * 87.85660 * 139.43960 * 13 12 11 15 15 C 1.36936 * 136.00456 * 153.33774 * 14 13 12 16 16 H 1.07992 * 120.00146 * 9.60433 * 15 14 13 17 17 C 1.38816 * 119.99770 * 189.60980 * 15 14 13 18 18 N 1.31624 * 119.99294 * 202.97694 * 17 15 14 19 19 Si 1.86801 * 120.00140 * 23.24940 * 17 15 14 20 20 H 1.48498 * 109.46970 * 269.72457 * 19 17 15 21 21 H 1.48495 * 109.47108 * 29.72435 * 19 17 15 22 22 H 1.48496 * 109.46942 * 149.72808 * 19 17 15 23 23 C 1.47175 * 87.99421 * 333.59140 * 14 13 12 24 24 C 1.52549 * 113.43433 * 302.66829 * 12 11 10 25 25 C 1.46882 * 120.46784 * 359.97438 * 9 7 5 26 26 C 1.54620 * 101.79952 * 334.60020 * 5 4 3 27 27 C 1.34416 * 124.34615 * 269.97522 * 3 2 1 28 28 O 1.21280 * 124.94783 * 359.58317 * 27 3 2 29 29 H 1.09007 * 109.46629 * 60.00132 * 1 2 3 30 30 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47092 * 300.00409 * 1 2 3 32 32 H 1.08998 * 109.47092 * 239.99591 * 2 1 3 33 33 H 1.08995 * 109.47043 * 120.00006 * 2 1 3 34 34 H 1.08993 * 110.24912 * 77.99125 * 4 3 2 35 35 H 1.09004 * 110.24696 * 315.99335 * 4 3 2 36 36 H 1.09002 * 109.59693 * 4.56416 * 10 9 7 37 37 H 1.09002 * 109.71578 * 244.19583 * 10 9 7 38 38 H 1.09000 * 109.52468 * 292.36413 * 11 10 9 39 39 H 1.08996 * 109.58429 * 172.18639 * 11 10 9 40 40 H 1.09002 * 113.49066 * 24.69417 * 13 12 11 41 41 H 1.09000 * 113.49210 * 254.18206 * 13 12 11 42 42 H 0.96993 * 120.00369 * 354.95021 * 18 17 15 43 43 H 1.09003 * 113.48448 * 141.15839 * 23 14 13 44 44 H 1.08995 * 113.48594 * 271.66072 * 23 14 13 45 45 H 1.08995 * 109.53113 * 177.22074 * 24 12 11 46 46 H 1.09006 * 109.52863 * 297.43071 * 24 12 11 47 47 H 1.09004 * 109.58745 * 355.42906 * 25 9 7 48 48 H 1.09001 * 109.59176 * 115.86214 * 25 9 7 49 49 H 1.08994 * 110.48862 * 143.45684 * 26 5 4 50 50 H 1.09004 * 110.48904 * 266.10428 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2116 5 6 2.3536 3.6345 0.7485 6 1 1.3791 4.1132 0.8449 7 6 3.4044 4.3983 1.5123 8 8 4.0261 3.8526 2.3991 9 7 3.6534 5.6879 1.2097 10 6 4.6758 6.4418 1.9473 11 6 5.6875 7.0105 0.9450 12 6 4.9384 7.7750 -0.1421 13 6 4.4199 9.1436 0.3024 14 7 4.8271 9.6635 -1.0127 15 6 4.4348 10.6889 -1.8311 16 1 3.7420 11.4339 -1.4690 17 6 4.9275 10.7705 -3.1263 18 7 4.9397 11.9274 -3.7540 19 14 5.5662 9.2372 -3.9810 20 1 7.0185 9.0877 -3.7094 21 1 4.8417 8.0466 -3.4685 22 1 5.3463 9.3584 -5.4446 23 6 5.8368 8.5940 -1.0653 24 6 3.9054 6.9272 -0.8778 25 6 2.9070 6.3587 0.1372 26 6 2.7508 3.4827 -0.7381 27 6 2.2717 2.0960 -1.1098 28 8 2.1360 1.6892 -2.2442 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 3.2499 1.8636 1.6431 35 1 1.4931 2.0269 1.9381 36 1 5.1863 5.7786 2.6456 37 1 4.2062 7.2584 2.4958 38 1 6.2515 6.1942 0.4937 39 1 6.3717 7.6853 1.4594 40 1 4.9818 9.5725 1.1321 41 1 3.3423 9.1682 0.4646 42 1 4.5381 12.7076 -3.3408 43 1 5.9538 8.1554 -2.0563 44 1 6.7880 8.8720 -0.6114 45 1 3.3761 7.5456 -1.6027 46 1 4.4068 6.1080 -1.3934 47 1 2.2525 5.6406 -0.3570 48 1 2.3120 7.1694 0.5577 49 1 2.2494 4.2359 -1.3458 50 1 3.8323 3.5561 -0.8534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035721073.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:43 Heat of formation + Delta-G solvation = -21.779356 kcal Electronic energy + Delta-G solvation = -30487.021530 eV Core-core repulsion = 26515.456466 eV Total energy + Delta-G solvation = -3971.565063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.20371 -41.31590 -40.12753 -37.54355 -37.13622 -35.09455 -34.62611 -32.61561 -32.00449 -30.61604 -28.92373 -28.56261 -27.10259 -25.63210 -24.60022 -24.18629 -23.42943 -22.46904 -20.84252 -20.31524 -19.54170 -18.94468 -18.46759 -17.83641 -17.33028 -17.02695 -16.73899 -16.26056 -16.11248 -15.97500 -15.86226 -15.32828 -15.19717 -14.96166 -14.74908 -14.57033 -14.49088 -14.24140 -14.02231 -13.66356 -13.55923 -13.32816 -13.30062 -12.94403 -12.82940 -12.74381 -12.60648 -12.50009 -12.43060 -12.08429 -12.00651 -11.89507 -11.68038 -11.52922 -11.16274 -11.09791 -10.83941 -10.68432 -10.64287 -9.78094 -9.60084 -9.16665 -8.63012 -5.39249 1.40115 1.45219 1.50727 1.54216 1.68700 1.83167 2.09133 2.54508 2.95527 3.09899 3.29437 3.31370 3.43392 3.56158 3.79265 3.86105 3.98141 4.09898 4.13894 4.18154 4.24890 4.26836 4.35988 4.47977 4.49617 4.55723 4.60620 4.62360 4.68426 4.72472 4.74785 4.79591 4.83397 4.85755 4.90165 4.94070 4.96217 5.04858 5.11342 5.14946 5.26952 5.28219 5.35996 5.49599 5.55450 5.66589 6.00127 6.03491 6.39581 6.73283 7.05932 7.11232 7.39781 8.37274 8.90222 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003161 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.668772 B = 8856.645880 C = 9992.393794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.615 5.615 4 C 0.121 3.879 5 C -0.115 4.115 6 H 0.147 0.853 7 C 0.532 3.468 8 O -0.569 6.569 9 N -0.599 5.599 10 C 0.118 3.882 11 C -0.108 4.108 12 C -0.076 4.076 13 C 0.131 3.869 14 N -0.654 5.654 15 C -0.292 4.292 16 H 0.044 0.956 17 C -0.081 4.081 18 N -0.964 5.964 19 Si 1.101 2.899 20 H -0.286 1.286 21 H -0.248 1.248 22 H -0.308 1.308 23 C 0.099 3.901 24 C -0.107 4.107 25 C 0.110 3.890 26 C -0.144 4.144 27 C 0.512 3.488 28 O -0.576 6.576 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.247 0.753 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.082 0.918 49 H 0.127 0.873 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 -24.149 15.544 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.348 5.348 4 C -0.002 4.002 5 C -0.136 4.136 6 H 0.165 0.835 7 C 0.320 3.680 8 O -0.449 6.449 9 N -0.331 5.331 10 C -0.004 4.004 11 C -0.147 4.147 12 C -0.077 4.077 13 C 0.006 3.994 14 N -0.382 5.382 15 C -0.419 4.419 16 H 0.062 0.938 17 C -0.274 4.274 18 N -0.609 5.609 19 Si 0.928 3.072 20 H -0.213 1.213 21 H -0.173 1.173 22 H -0.236 1.236 23 C -0.026 4.026 24 C -0.145 4.145 25 C -0.012 4.012 26 C -0.184 4.184 27 C 0.300 3.700 28 O -0.457 6.457 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.131 0.869 48 H 0.100 0.900 49 H 0.145 0.855 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.826 -25.071 13.953 29.493 hybrid contribution -0.490 1.764 0.856 2.021 sum -7.316 -23.307 14.809 28.567 Atomic orbital electron populations 1.22107 0.94741 1.03328 1.01945 1.21540 0.95158 0.80219 1.03771 1.48516 1.64717 1.14543 1.07060 1.22038 1.03900 0.87613 0.86625 1.22239 1.00819 0.96597 0.93953 0.83526 1.20305 0.83328 0.81374 0.82993 1.90691 1.52042 1.68578 1.33577 1.48089 1.38397 1.10845 1.35769 1.21595 0.89053 0.95864 0.93853 1.21704 0.97555 0.99758 0.95651 1.21702 0.96403 0.93676 0.95934 1.22565 0.98535 0.90494 0.87838 1.45938 1.38358 1.34829 1.19040 1.19792 1.26598 1.01479 0.94068 0.93808 1.26908 1.01319 1.04149 0.94983 1.71040 1.45588 0.99528 1.44758 0.83329 0.76342 0.73575 0.73909 1.21299 1.17289 1.23606 1.22857 0.93392 0.88259 0.98076 1.21550 0.96680 0.98648 0.97652 1.21986 0.93572 0.98271 0.87387 1.22517 1.04592 0.95525 0.95757 1.21183 0.76065 0.88536 0.84186 1.90719 1.55519 1.76481 1.22939 0.94366 0.89804 0.91180 0.91476 0.87710 0.89981 0.87273 0.89038 0.90170 0.91076 0.89580 0.93340 0.93208 0.94355 0.94485 0.93605 0.91656 0.90790 0.86939 0.89999 0.85527 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.24 71.98 0.74 -0.97 16 2 C 0.11 1.42 6.65 86.38 0.57 2.00 16 3 N -0.62 -9.56 2.93 -817.91 -2.40 -11.96 16 4 C 0.12 1.44 6.69 86.83 0.58 2.02 16 5 C -0.11 -1.37 2.54 -10.48 -0.03 -1.40 16 6 H 0.15 1.00 7.90 -2.39 -0.02 0.98 16 7 C 0.53 9.22 6.99 87.66 0.61 9.83 16 8 O -0.57 -13.38 14.92 -3.01 -0.04 -13.42 16 9 N -0.60 -10.34 2.94 -818.55 -2.41 -12.75 16 10 C 0.12 2.16 6.34 86.42 0.55 2.71 16 11 C -0.11 -2.26 5.31 30.57 0.16 -2.10 16 12 C -0.08 -2.12 0.83 -52.61 -0.04 -2.16 16 13 C 0.13 4.40 7.63 83.32 0.64 5.04 16 14 N -0.65 -29.97 3.35 -738.75 -2.47 -32.44 16 15 C -0.29 -16.59 10.95 84.03 0.92 -15.67 16 16 H 0.04 2.71 8.06 -2.91 -0.02 2.68 16 17 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 18 N -0.96 -62.28 13.70 21.65 0.30 -61.98 16 19 Si 1.10 53.18 25.34 68.60 1.74 54.92 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.25 -10.40 6.55 99.48 0.65 -9.75 16 22 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 23 C 0.10 3.76 6.31 83.21 0.53 4.29 16 24 C -0.11 -2.65 5.25 30.55 0.16 -2.49 16 25 C 0.11 1.84 5.87 86.41 0.51 2.35 16 26 C -0.14 -2.19 5.31 30.61 0.16 -2.03 16 27 C 0.51 10.83 8.02 87.92 0.71 11.53 16 28 O -0.58 -17.52 17.59 -3.03 -0.05 -17.57 16 29 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 1.06 7.92 -2.39 -0.02 1.04 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.21 7.01 -2.39 -0.02 1.20 16 35 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 1.74 6.98 -2.39 -0.02 1.73 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 40 H 0.05 1.56 8.06 -2.39 -0.02 1.54 16 41 H 0.05 1.60 7.53 -2.39 -0.02 1.58 16 42 H 0.25 16.01 8.73 -92.71 -0.81 15.20 16 43 H 0.04 1.48 3.70 -2.39 -0.01 1.47 16 44 H 0.05 1.71 8.09 -2.39 -0.02 1.69 16 45 H 0.06 2.03 7.95 -2.39 -0.02 2.01 16 46 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.11 1.33 4.02 -2.39 -0.01 1.32 16 48 H 0.08 1.35 7.60 -2.39 -0.02 1.33 16 49 H 0.13 1.65 6.59 -2.39 -0.02 1.63 16 50 H 0.11 1.76 7.89 -2.39 -0.02 1.74 16 Total: -1.00 -79.56 383.22 2.73 -76.83 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.84 Total: 9.74 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 7.23 Total: 8.62 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -6.98 Total: -119.13 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.10 Total: -30.99 kcal Atomic # 14 Polarization: 53.18 SS G_CDS: 1.74 Total: 54.92 kcal Total: -79.56 2.73 -76.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035721073.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.053 kcal (2) G-P(sol) polarization free energy of solvation -79.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds