Wall clock time and date at job start Tue Mar 31 2020 19:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47070 * 2 1 4 4 C 1.46770 * 124.34999 * 269.95201 * 3 2 1 5 5 C 1.54484 * 105.47242 * 197.04028 * 4 3 2 6 6 H 1.08998 * 110.99990 * 92.71583 * 5 4 3 7 7 C 1.50696 * 110.96461 * 216.46318 * 5 4 3 8 8 O 1.21283 * 120.00331 * 353.83527 * 7 5 4 9 9 N 1.34775 * 119.99826 * 173.83001 * 7 5 4 10 10 C 1.46949 * 120.44109 * 0.02562 * 9 7 5 11 11 C 1.53593 * 108.53053 * 125.73057 * 10 9 7 12 12 H 1.08994 * 110.60373 * 172.16667 * 11 10 9 13 13 C 1.53367 * 108.68965 * 293.76047 * 11 10 9 14 14 C 1.53004 * 109.27850 * 60.30390 * 13 11 10 15 15 C 1.53005 * 109.80229 * 60.56085 * 14 13 11 16 16 C 1.56269 * 109.51502 * 299.70648 * 15 14 13 17 17 H 1.09000 * 111.50810 * 177.94120 * 16 15 14 18 18 C 1.46946 * 120.44508 * 179.97438 * 9 7 5 19 19 N 1.47578 * 107.76551 * 51.14787 * 11 10 9 20 20 C 1.36938 * 121.60282 * 120.45465 * 19 11 10 21 21 H 1.07999 * 120.00655 * 332.09379 * 20 19 11 22 22 C 1.38818 * 119.99551 * 152.10242 * 20 19 11 23 23 N 1.31622 * 119.99705 * 341.88749 * 22 20 19 24 24 Si 1.86795 * 120.00175 * 161.88734 * 22 20 19 25 25 H 1.48499 * 109.47186 * 89.99493 * 24 22 20 26 26 H 1.48495 * 109.47310 * 209.99928 * 24 22 20 27 27 H 1.48505 * 109.46814 * 329.99746 * 24 22 20 28 28 C 1.54630 * 101.76392 * 334.57896 * 5 4 3 29 29 C 1.34416 * 124.35250 * 89.97544 * 3 2 1 30 30 O 1.21288 * 124.93913 * 359.60442 * 29 3 2 31 31 H 1.09003 * 109.46814 * 60.00111 * 1 2 3 32 32 H 1.09005 * 109.46818 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47048 * 300.00205 * 1 2 3 34 34 H 1.08996 * 109.47048 * 239.99795 * 2 1 3 35 35 H 1.09003 * 109.46814 * 119.99889 * 2 1 3 36 36 H 1.08992 * 110.24761 * 78.03560 * 4 3 2 37 37 H 1.09004 * 110.24114 * 316.03883 * 4 3 2 38 38 H 1.09000 * 109.62582 * 245.44487 * 10 9 7 39 39 H 1.09001 * 109.62836 * 6.01626 * 10 9 7 40 40 H 1.09004 * 109.50693 * 180.24687 * 13 11 10 41 41 H 1.09002 * 109.50223 * 300.32257 * 13 11 10 42 42 H 1.09002 * 109.41446 * 180.66587 * 14 13 11 43 43 H 1.09001 * 109.41474 * 300.45768 * 14 13 11 44 44 H 1.08998 * 109.50454 * 59.35788 * 15 14 13 45 45 H 1.08992 * 109.51047 * 179.49015 * 15 14 13 46 46 H 1.08998 * 109.62017 * 353.96825 * 18 9 7 47 47 H 1.09001 * 109.62253 * 114.34236 * 18 9 7 48 48 H 0.97005 * 119.99900 * 180.02562 * 23 22 20 49 49 H 1.09004 * 110.48461 * 143.47887 * 28 5 4 50 50 H 1.08996 * 110.49111 * 266.12217 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2953 2.1616 -1.2117 5 6 3.1756 3.3436 -0.7484 6 1 4.2344 3.1030 -0.8438 7 6 2.8394 4.5982 -1.5126 8 8 2.0547 4.5538 -2.4363 9 7 3.4107 5.7696 -1.1694 10 6 4.3631 5.8345 -0.0522 11 6 5.6644 6.4758 -0.5567 12 1 6.3445 6.6672 0.2732 13 6 6.3123 5.5338 -1.5790 14 6 5.3523 5.3236 -2.7517 15 6 5.0588 6.6644 -3.4279 16 6 4.3992 7.6358 -2.3968 17 1 4.2088 8.6152 -2.8357 18 6 3.0904 6.9989 -1.9081 19 7 5.3104 7.7354 -1.2394 20 6 5.8018 8.9423 -0.8186 21 1 6.0664 9.0857 0.2187 22 6 5.9596 9.9816 -1.7252 23 7 5.9863 9.7298 -3.0168 24 14 6.1340 11.7374 -1.1121 25 1 7.5699 12.0438 -0.8897 26 1 5.5792 12.6724 -2.1236 27 1 5.3914 11.8919 0.1646 28 6 2.7697 3.4753 0.7378 29 6 2.2707 2.0964 1.1097 30 8 2.1208 1.6945 2.2442 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.3651 2.5306 -1.6436 37 1 2.8336 1.5524 -1.9379 38 1 3.9440 6.4401 0.7514 39 1 4.5684 4.8282 0.3128 40 1 7.2404 5.9746 -1.9429 41 1 6.5257 4.5751 -1.1063 42 1 5.8059 4.6450 -3.4741 43 1 4.4214 4.8913 -2.3849 44 1 5.9900 7.1025 -3.7869 45 1 4.3819 6.5080 -4.2678 46 1 2.4591 6.7579 -2.7634 47 1 2.5677 7.6947 -1.2518 48 1 6.0970 10.4560 -3.6503 49 1 3.6326 3.7458 1.3464 50 1 1.9749 4.2123 0.8524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039615252.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:22 Heat of formation + Delta-G solvation = -13.473577 kcal Electronic energy + Delta-G solvation = -31655.295017 eV Core-core repulsion = 27684.090119 eV Total energy + Delta-G solvation = -3971.204898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32725 -40.00428 -37.86001 -36.38431 -34.46915 -33.79916 -32.80865 -31.81121 -30.61817 -29.76846 -27.93187 -26.92880 -25.67950 -24.27464 -23.62943 -22.62110 -21.48501 -21.25244 -19.68562 -19.22733 -18.34105 -17.76442 -16.87826 -16.41957 -16.02288 -15.61867 -15.17295 -14.90750 -14.67130 -14.30752 -14.07089 -13.89345 -13.70792 -13.57615 -13.54588 -13.28459 -12.96942 -12.81893 -12.49998 -12.48625 -12.21035 -12.15079 -11.92225 -11.64729 -11.48849 -11.38042 -11.31269 -11.21408 -10.96077 -10.73467 -10.38312 -10.25914 -10.10230 -10.07428 -10.01009 -9.67841 -9.52896 -9.31724 -8.92316 -8.57596 -7.98146 -6.68198 -5.88798 -3.32692 2.41651 2.69855 2.76496 3.26449 3.31425 3.39895 3.41339 4.06442 4.18247 4.38742 4.57043 4.68305 4.79325 4.91876 4.94317 5.10140 5.11761 5.26114 5.28050 5.35509 5.42337 5.51289 5.57889 5.59488 5.62728 5.67961 5.74307 5.78916 5.82511 5.91273 5.96026 6.07899 6.21946 6.32568 6.36369 6.39091 6.42605 6.52426 6.65469 6.79815 6.86379 6.89326 7.00710 7.01904 7.43237 7.51833 7.68704 7.77344 7.98883 8.29918 8.36023 9.06671 9.68903 10.29813 11.17777 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024331 B = 0.003237 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.501620 B = 8648.232903 C = 8988.769410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.119 3.881 5 C -0.125 4.125 6 H 0.118 0.882 7 C 0.525 3.475 8 O -0.549 6.549 9 N -0.582 5.582 10 C 0.088 3.912 11 C 0.151 3.849 12 H 0.079 0.921 13 C -0.125 4.125 14 C -0.136 4.136 15 C -0.114 4.114 16 C 0.181 3.819 17 H 0.117 0.883 18 C 0.091 3.909 19 N -0.578 5.578 20 C -0.254 4.254 21 H 0.067 0.933 22 C 0.006 3.994 23 N -0.894 5.894 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C -0.146 4.146 29 C 0.521 3.479 30 O -0.533 6.533 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.255 0.745 49 H 0.114 0.886 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 -15.331 3.079 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.004 4.004 5 C -0.147 4.147 6 H 0.136 0.864 7 C 0.313 3.687 8 O -0.428 6.428 9 N -0.314 5.314 10 C -0.037 4.037 11 C 0.043 3.957 12 H 0.097 0.903 13 C -0.164 4.164 14 C -0.174 4.174 15 C -0.153 4.153 16 C 0.074 3.926 17 H 0.134 0.866 18 C -0.032 4.032 19 N -0.298 5.298 20 C -0.383 4.383 21 H 0.085 0.915 22 C -0.193 4.193 23 N -0.538 5.538 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.186 4.186 29 C 0.308 3.692 30 O -0.410 6.410 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.132 0.868 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.351 -15.461 3.073 16.995 hybrid contribution 0.379 0.979 0.064 1.051 sum -5.972 -14.482 3.137 15.976 Atomic orbital electron populations 1.22170 0.95744 1.02300 1.02683 1.21344 0.94479 0.80967 1.03127 1.48388 1.65798 1.13897 1.07355 1.21981 1.00548 0.91169 0.86708 1.22282 1.02614 0.94571 0.95222 0.86418 1.19667 0.80558 0.84380 0.84065 1.90689 1.36041 1.85662 1.30381 1.48108 1.42366 1.07984 1.32936 1.22614 0.91759 1.00808 0.88481 1.21200 0.92110 0.87634 0.94743 0.90343 1.21982 0.99334 0.97693 0.97388 1.22065 1.00078 0.98283 0.97003 1.22261 1.01349 0.94549 0.97191 1.21700 0.85483 0.98235 0.87191 0.86556 1.22557 1.00437 0.84177 0.96037 1.44418 1.51287 1.00794 1.33333 1.19112 1.38788 0.87800 0.92605 0.91516 1.25028 1.00044 0.98935 0.95323 1.69988 1.52502 1.30915 1.00390 0.86324 0.77791 0.84803 0.77973 1.21468 1.21583 1.20502 1.22514 1.04358 0.96451 0.95316 1.20822 0.76633 0.87333 0.84363 1.90722 1.53943 1.75236 1.21067 0.92188 0.91436 0.92244 0.90230 0.90010 0.89103 0.89753 0.91258 0.90653 0.92119 0.94143 0.95001 0.90771 0.91082 0.94483 0.90078 0.92080 0.93526 0.86778 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.12 1.04 6.65 -4.04 -0.03 1.01 16 3 N -0.62 -6.53 2.93 -172.41 -0.51 -7.03 16 4 C 0.12 1.21 6.66 -3.12 -0.02 1.19 16 5 C -0.13 -1.38 2.52 -90.14 -0.23 -1.61 16 6 H 0.12 1.16 7.82 -51.93 -0.41 0.75 16 7 C 0.53 7.72 4.33 -10.99 -0.05 7.67 16 8 O -0.55 -9.63 14.96 5.55 0.08 -9.54 16 9 N -0.58 -9.14 1.65 -172.28 -0.28 -9.43 16 10 C 0.09 1.27 5.11 -3.49 -0.02 1.25 16 11 C 0.15 2.69 3.58 -66.84 -0.24 2.45 16 12 H 0.08 1.37 8.01 -51.93 -0.42 0.96 16 13 C -0.12 -2.12 5.59 -26.54 -0.15 -2.27 16 14 C -0.14 -2.40 5.55 -26.73 -0.15 -2.55 16 15 C -0.11 -2.34 5.67 -24.97 -0.14 -2.49 16 16 C 0.18 3.86 2.78 -65.27 -0.18 3.67 16 17 H 0.12 2.86 5.93 -51.93 -0.31 2.55 16 18 C 0.09 1.67 5.88 -3.52 -0.02 1.65 16 19 N -0.58 -12.67 2.54 -153.67 -0.39 -13.06 16 20 C -0.25 -6.29 9.71 -15.06 -0.15 -6.44 16 21 H 0.07 1.63 7.89 -52.49 -0.41 1.22 16 22 C 0.01 0.15 4.99 -17.43 -0.09 0.07 16 23 N -0.89 -23.81 11.12 55.49 0.62 -23.19 16 24 Si 0.90 20.43 29.59 -169.99 -5.03 15.40 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 C -0.15 -1.57 5.15 -26.74 -0.14 -1.71 16 29 C 0.52 6.55 8.02 -10.86 -0.09 6.46 16 30 O -0.53 -8.51 17.60 5.55 0.10 -8.41 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 36 H 0.09 1.05 7.06 -51.93 -0.37 0.68 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.86 4.31 -51.93 -0.22 0.63 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.23 2.52 -52.03 -0.13 1.10 16 44 H 0.07 1.67 8.09 -51.93 -0.42 1.25 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 49 H 0.11 1.08 6.66 -51.93 -0.35 0.73 16 50 H 0.11 1.21 7.89 -51.93 -0.41 0.80 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -29.82 373.10 -9.09 -38.90 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.00 Total: 3.35 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.30 Total: 7.39 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.56 Total: -52.71 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.18 Total: -17.95 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.82 -9.09 -38.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039615252.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.430 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds