Wall clock time and date at job start Tue Mar 31 2020 19:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47070 * 2 1 4 4 C 1.46770 * 124.34999 * 269.95201 * 3 2 1 5 5 C 1.54484 * 105.47242 * 197.04028 * 4 3 2 6 6 H 1.08998 * 110.99990 * 92.71583 * 5 4 3 7 7 C 1.50696 * 110.96461 * 216.46318 * 5 4 3 8 8 O 1.21283 * 120.00331 * 353.83527 * 7 5 4 9 9 N 1.34775 * 119.99826 * 173.83001 * 7 5 4 10 10 C 1.46949 * 120.44109 * 0.02562 * 9 7 5 11 11 C 1.53593 * 108.53053 * 125.73057 * 10 9 7 12 12 H 1.08994 * 110.60373 * 172.16667 * 11 10 9 13 13 C 1.53367 * 108.68965 * 293.76047 * 11 10 9 14 14 C 1.53004 * 109.27850 * 60.30390 * 13 11 10 15 15 C 1.53005 * 109.80229 * 60.56085 * 14 13 11 16 16 C 1.56269 * 109.51502 * 299.70648 * 15 14 13 17 17 H 1.09000 * 111.50810 * 177.94120 * 16 15 14 18 18 C 1.46946 * 120.44508 * 179.97438 * 9 7 5 19 19 N 1.47578 * 107.76551 * 51.14787 * 11 10 9 20 20 C 1.36938 * 121.60282 * 120.45465 * 19 11 10 21 21 H 1.07999 * 120.00655 * 332.09379 * 20 19 11 22 22 C 1.38818 * 119.99551 * 152.10242 * 20 19 11 23 23 N 1.31622 * 119.99705 * 341.88749 * 22 20 19 24 24 Si 1.86795 * 120.00175 * 161.88734 * 22 20 19 25 25 H 1.48499 * 109.47186 * 89.99493 * 24 22 20 26 26 H 1.48495 * 109.47310 * 209.99928 * 24 22 20 27 27 H 1.48505 * 109.46814 * 329.99746 * 24 22 20 28 28 C 1.54630 * 101.76392 * 334.57896 * 5 4 3 29 29 C 1.34416 * 124.35250 * 89.97544 * 3 2 1 30 30 O 1.21288 * 124.93913 * 359.60442 * 29 3 2 31 31 H 1.09003 * 109.46814 * 60.00111 * 1 2 3 32 32 H 1.09005 * 109.46818 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47048 * 300.00205 * 1 2 3 34 34 H 1.08996 * 109.47048 * 239.99795 * 2 1 3 35 35 H 1.09003 * 109.46814 * 119.99889 * 2 1 3 36 36 H 1.08992 * 110.24761 * 78.03560 * 4 3 2 37 37 H 1.09004 * 110.24114 * 316.03883 * 4 3 2 38 38 H 1.09000 * 109.62582 * 245.44487 * 10 9 7 39 39 H 1.09001 * 109.62836 * 6.01626 * 10 9 7 40 40 H 1.09004 * 109.50693 * 180.24687 * 13 11 10 41 41 H 1.09002 * 109.50223 * 300.32257 * 13 11 10 42 42 H 1.09002 * 109.41446 * 180.66587 * 14 13 11 43 43 H 1.09001 * 109.41474 * 300.45768 * 14 13 11 44 44 H 1.08998 * 109.50454 * 59.35788 * 15 14 13 45 45 H 1.08992 * 109.51047 * 179.49015 * 15 14 13 46 46 H 1.08998 * 109.62017 * 353.96825 * 18 9 7 47 47 H 1.09001 * 109.62253 * 114.34236 * 18 9 7 48 48 H 0.97005 * 119.99900 * 180.02562 * 23 22 20 49 49 H 1.09004 * 110.48461 * 143.47887 * 28 5 4 50 50 H 1.08996 * 110.49111 * 266.12217 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2953 2.1616 -1.2117 5 6 3.1756 3.3436 -0.7484 6 1 4.2344 3.1030 -0.8438 7 6 2.8394 4.5982 -1.5126 8 8 2.0547 4.5538 -2.4363 9 7 3.4107 5.7696 -1.1694 10 6 4.3631 5.8345 -0.0522 11 6 5.6644 6.4758 -0.5567 12 1 6.3445 6.6672 0.2732 13 6 6.3123 5.5338 -1.5790 14 6 5.3523 5.3236 -2.7517 15 6 5.0588 6.6644 -3.4279 16 6 4.3992 7.6358 -2.3968 17 1 4.2088 8.6152 -2.8357 18 6 3.0904 6.9989 -1.9081 19 7 5.3104 7.7354 -1.2394 20 6 5.8018 8.9423 -0.8186 21 1 6.0664 9.0857 0.2187 22 6 5.9596 9.9816 -1.7252 23 7 5.9863 9.7298 -3.0168 24 14 6.1340 11.7374 -1.1121 25 1 7.5699 12.0438 -0.8897 26 1 5.5792 12.6724 -2.1236 27 1 5.3914 11.8919 0.1646 28 6 2.7697 3.4753 0.7378 29 6 2.2707 2.0964 1.1097 30 8 2.1208 1.6945 2.2442 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.3651 2.5306 -1.6436 37 1 2.8336 1.5524 -1.9379 38 1 3.9440 6.4401 0.7514 39 1 4.5684 4.8282 0.3128 40 1 7.2404 5.9746 -1.9429 41 1 6.5257 4.5751 -1.1063 42 1 5.8059 4.6450 -3.4741 43 1 4.4214 4.8913 -2.3849 44 1 5.9900 7.1025 -3.7869 45 1 4.3819 6.5080 -4.2678 46 1 2.4591 6.7579 -2.7634 47 1 2.5677 7.6947 -1.2518 48 1 6.0970 10.4560 -3.6503 49 1 3.6326 3.7458 1.3464 50 1 1.9749 4.2123 0.8524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039615252.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:21 Heat of formation + Delta-G solvation = -30.212680 kcal Electronic energy + Delta-G solvation = -31656.020878 eV Core-core repulsion = 27684.090119 eV Total energy + Delta-G solvation = -3971.930760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46448 -41.11046 -39.20826 -37.38336 -35.76250 -34.91239 -34.35215 -33.26503 -32.25672 -30.69849 -28.90452 -28.34934 -27.06798 -25.67015 -24.72185 -23.67040 -22.95237 -22.69136 -20.68801 -20.40516 -19.81424 -18.98105 -17.89052 -17.72155 -17.14373 -16.73590 -16.58746 -16.24486 -16.04224 -15.71554 -15.23746 -15.07611 -14.89623 -14.64827 -14.54986 -14.48813 -14.41264 -14.07321 -13.89750 -13.60242 -13.39372 -13.19134 -13.08318 -12.99660 -12.87948 -12.58470 -12.45453 -12.37718 -12.33520 -12.15623 -11.98398 -11.82481 -11.69501 -11.58218 -11.20058 -11.07717 -11.06716 -10.62881 -10.41861 -9.76508 -9.43404 -8.42366 -7.79401 -5.24320 1.47740 1.48719 1.52343 1.56612 1.59228 1.86177 2.13240 2.54655 3.12610 3.31568 3.33623 3.55101 3.61513 3.85706 4.05383 4.14709 4.18759 4.21549 4.26569 4.29042 4.32456 4.41107 4.47383 4.48912 4.55959 4.63576 4.65489 4.76938 4.80926 4.83601 4.87612 4.90397 4.92348 4.96509 4.98877 5.10256 5.19669 5.27100 5.31250 5.40195 5.45979 5.56344 5.57973 5.70012 5.76705 5.87733 6.05076 6.43867 6.52649 7.08427 7.14922 7.19309 7.88602 8.45900 9.23406 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024331 B = 0.003237 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.501620 B = 8648.232903 C = 8988.769410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.614 5.614 4 C 0.122 3.878 5 C -0.116 4.116 6 H 0.146 0.854 7 C 0.527 3.473 8 O -0.576 6.576 9 N -0.585 5.585 10 C 0.097 3.903 11 C 0.141 3.859 12 H 0.083 0.917 13 C -0.118 4.118 14 C -0.131 4.131 15 C -0.108 4.108 16 C 0.181 3.819 17 H 0.076 0.924 18 C 0.105 3.895 19 N -0.594 5.594 20 C -0.252 4.252 21 H 0.069 0.931 22 C -0.045 4.045 23 N -0.922 5.922 24 Si 0.956 3.044 25 H -0.290 1.290 26 H -0.300 1.300 27 H -0.272 1.272 28 C -0.141 4.141 29 C 0.516 3.484 30 O -0.573 6.573 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.028 0.972 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.030 0.970 45 H 0.033 0.967 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.246 0.754 49 H 0.134 0.866 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 -18.055 4.352 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.347 5.347 4 C -0.001 4.001 5 C -0.137 4.137 6 H 0.163 0.837 7 C 0.317 3.683 8 O -0.456 6.456 9 N -0.317 5.317 10 C -0.027 4.027 11 C 0.034 3.966 12 H 0.101 0.899 13 C -0.157 4.157 14 C -0.169 4.169 15 C -0.147 4.147 16 C 0.073 3.927 17 H 0.093 0.907 18 C -0.019 4.019 19 N -0.315 5.315 20 C -0.383 4.383 21 H 0.087 0.913 22 C -0.241 4.241 23 N -0.568 5.568 24 Si 0.786 3.214 25 H -0.218 1.218 26 H -0.226 1.226 27 H -0.197 1.197 28 C -0.181 4.181 29 C 0.304 3.696 30 O -0.453 6.453 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.152 0.848 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.341 -18.228 4.353 19.784 hybrid contribution 0.327 1.776 -0.360 1.841 sum -6.014 -16.452 3.994 17.966 Atomic orbital electron populations 1.22133 0.95593 1.03294 1.01449 1.21566 0.94611 0.80100 1.04249 1.48507 1.64783 1.14487 1.06938 1.22002 1.00128 0.91211 0.86777 1.22274 1.04277 0.92527 0.94617 0.83683 1.20257 0.79564 0.84818 0.83656 1.90694 1.37079 1.86083 1.31777 1.48102 1.43021 1.07444 1.33096 1.22615 0.89388 1.02951 0.87724 1.21489 0.94194 0.86129 0.94749 0.89852 1.21919 0.97465 0.99421 0.96939 1.22049 1.01137 0.96315 0.97371 1.22136 0.99139 0.96187 0.97280 1.21459 0.87024 0.96808 0.87406 0.90660 1.22117 0.98322 0.85399 0.96098 1.44588 1.51622 1.01725 1.33587 1.19406 1.37061 0.89190 0.92609 0.91288 1.25630 1.01183 1.01804 0.95523 1.70148 1.54507 1.30962 1.01160 0.85452 0.77280 0.81367 0.77307 1.21757 1.22635 1.19749 1.22521 1.05056 0.95380 0.95161 1.21088 0.76357 0.87996 0.84138 1.90706 1.55900 1.76100 1.22640 0.92229 0.89429 0.94541 0.87364 0.90604 0.90448 0.87236 0.90858 0.86386 0.95262 0.89530 0.93964 0.89146 0.95090 0.94797 0.90633 0.92530 0.94500 0.84785 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 71.98 0.74 -1.60 16 2 C 0.12 1.63 6.65 86.38 0.57 2.20 16 3 N -0.61 -10.95 2.93 -817.97 -2.40 -13.35 16 4 C 0.12 2.00 6.66 86.83 0.58 2.57 16 5 C -0.12 -2.02 2.52 -10.48 -0.03 -2.05 16 6 H 0.15 1.88 7.82 -2.39 -0.02 1.86 16 7 C 0.53 13.80 4.33 87.66 0.38 14.18 16 8 O -0.58 -18.92 14.96 -3.04 -0.05 -18.97 16 9 N -0.59 -16.88 1.65 -817.35 -1.35 -18.23 16 10 C 0.10 2.43 5.11 86.49 0.44 2.87 16 11 C 0.14 4.68 3.58 45.11 0.16 4.84 16 12 H 0.08 2.69 8.01 -2.39 -0.02 2.67 16 13 C -0.12 -3.69 5.59 30.72 0.17 -3.52 16 14 C -0.13 -4.32 5.55 30.60 0.17 -4.15 16 15 C -0.11 -4.52 5.67 31.73 0.18 -4.34 16 16 C 0.18 7.86 2.78 46.09 0.13 7.99 16 17 H 0.08 3.92 5.93 -2.39 -0.01 3.90 16 18 C 0.11 3.82 5.88 86.48 0.51 4.33 16 19 N -0.59 -26.03 2.54 -640.08 -1.63 -27.65 16 20 C -0.25 -12.62 9.71 84.03 0.82 -11.81 16 21 H 0.07 3.35 7.89 -2.91 -0.02 3.33 16 22 C -0.05 -2.38 4.99 84.86 0.42 -1.95 16 23 N -0.92 -51.39 11.12 21.65 0.24 -51.15 16 24 Si 0.96 43.08 29.59 68.60 2.03 45.11 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 C -0.14 -2.47 5.15 30.59 0.16 -2.32 16 29 C 0.52 11.53 8.02 87.90 0.71 12.24 16 30 O -0.57 -17.35 17.60 -3.06 -0.05 -17.40 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.19 7.93 -2.39 -0.02 1.18 16 36 H 0.08 1.55 7.06 -2.39 -0.02 1.54 16 37 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.12 1.98 4.31 -2.39 -0.01 1.97 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 2.71 2.52 -2.59 -0.01 2.70 16 44 H 0.03 1.51 8.09 -2.39 -0.02 1.49 16 45 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 2.83 6.99 -2.39 -0.02 2.81 16 47 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 49 H 0.13 1.83 6.66 -2.39 -0.02 1.81 16 50 H 0.11 2.01 7.89 -2.39 -0.02 1.99 16 Total: -1.00 -68.44 373.10 3.84 -64.60 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.94 Total: 17.56 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.11 Total: 19.49 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -5.13 Total: -110.38 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.10 Total: -36.37 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -68.44 3.84 -64.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039615252.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.383 kcal (2) G-P(sol) polarization free energy of solvation -68.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds