Wall clock time and date at job start Tue Mar 31 2020 19:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46766 * 124.35286 * 269.72490 * 3 2 1 5 5 C 1.54296 * 105.56628 * 196.88636 * 4 3 2 6 6 H 1.09004 * 110.74713 * 93.00241 * 5 4 3 7 7 C 1.50700 * 111.15437 * 216.69640 * 5 4 3 8 8 O 1.21280 * 119.99391 * 354.03642 * 7 5 4 9 9 N 1.34769 * 120.00502 * 174.03342 * 7 5 4 10 10 C 1.47582 * 125.67464 * 359.69276 * 9 7 5 11 11 C 1.55423 * 104.92043 * 156.11799 * 10 9 7 12 12 C 1.53497 * 101.30186 * 35.61535 * 11 10 9 13 13 C 1.53476 * 111.80403 * 88.09740 * 12 11 10 14 14 C 1.54632 * 102.74028 * 154.35698 * 13 12 11 15 15 N 1.47152 * 107.34656 * 339.33984 * 14 13 12 16 16 C 1.36936 * 125.59844 * 179.06361 * 15 14 13 17 17 H 1.08004 * 119.99604 * 180.02562 * 16 15 14 18 18 C 1.38801 * 120.00175 * 0.03073 * 16 15 14 19 19 N 1.31619 * 120.00134 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00288 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47085 * 59.99750 * 20 18 16 22 22 H 1.48497 * 109.47322 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46713 * 300.00255 * 20 18 16 24 24 C 1.47753 * 108.80137 * 359.08985 * 15 14 13 25 25 C 1.47448 * 125.67751 * 180.02562 * 9 7 5 26 26 C 1.54639 * 101.84559 * 334.93981 * 5 4 3 27 27 C 1.34426 * 124.34837 * 90.02687 * 3 2 1 28 28 O 1.21280 * 124.94315 * 359.61590 * 27 3 2 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 34 34 H 1.08998 * 110.24604 * 316.02048 * 4 3 2 35 35 H 1.09002 * 110.24437 * 78.01753 * 4 3 2 36 36 H 1.09006 * 110.32912 * 275.09707 * 10 9 7 37 37 H 1.09004 * 110.33021 * 37.31618 * 10 9 7 38 38 H 1.09004 * 111.22567 * 277.55767 * 11 10 9 39 39 H 1.08994 * 110.97838 * 153.57068 * 11 10 9 40 40 H 1.08997 * 110.75408 * 272.66540 * 13 12 11 41 41 H 1.08997 * 110.75484 * 35.86008 * 13 12 11 42 42 H 1.08997 * 109.87418 * 98.78661 * 14 13 12 43 43 H 1.08998 * 109.86386 * 219.76352 * 14 13 12 44 44 H 0.97006 * 120.00390 * 180.02562 * 19 18 16 45 45 H 1.08999 * 110.39874 * 263.53805 * 24 15 14 46 46 H 1.09000 * 110.39689 * 141.13518 * 24 15 14 47 47 H 1.08997 * 109.99516 * 301.50835 * 25 9 7 48 48 H 1.08997 * 109.99585 * 62.84851 * 25 9 7 49 49 H 1.08995 * 110.48125 * 265.90309 * 26 5 4 50 50 H 1.08995 * 110.48288 * 143.26032 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2998 2.1601 -1.2117 5 6 3.1740 3.3443 -0.7489 6 1 4.2327 3.1036 -0.8454 7 6 2.8374 4.5996 -1.5118 8 8 2.0518 4.5558 -2.4348 9 7 3.4093 5.7706 -1.1687 10 6 4.3727 5.9681 -0.0682 11 6 5.1672 7.2462 -0.4565 12 6 4.0745 8.0860 -1.1324 13 6 3.3098 8.9486 -0.1192 14 6 2.7963 10.1204 -0.9878 15 7 3.6379 10.1743 -2.1937 16 6 3.4961 11.0632 -3.2255 17 1 4.1672 11.0209 -4.0707 18 6 2.4901 12.0187 -3.1852 19 7 1.6721 12.0700 -2.1554 20 14 2.2972 13.2319 -4.5925 21 1 2.0377 12.4907 -5.8529 22 1 1.1582 14.1417 -4.3092 23 1 3.5427 14.0281 -4.7339 24 6 4.6606 9.1113 -2.1086 25 6 3.1715 7.0690 -1.8257 26 6 2.7696 3.4753 0.7380 27 6 2.2715 2.0962 1.1099 28 8 2.1228 1.6939 2.2443 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.8410 1.5502 -1.9349 35 1 1.3710 2.5282 -1.6477 36 1 3.8457 6.1186 0.8740 37 1 5.0444 5.1128 0.0052 38 1 5.9709 7.0142 -1.1553 39 1 5.5551 7.7488 0.4295 40 1 2.4768 8.3924 0.3106 41 1 3.9775 9.3080 0.6638 42 1 1.7576 9.9462 -1.2683 43 1 2.8785 11.0556 -0.4340 44 1 0.9688 12.7375 -2.1273 45 1 5.5959 9.5141 -1.7201 46 1 4.8188 8.6572 -3.0867 47 1 3.4271 7.0039 -2.8833 48 1 2.1270 7.3588 -1.7114 49 1 1.9747 4.2120 0.8536 50 1 3.6331 3.7458 1.3456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041338879.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:27 Heat of formation + Delta-G solvation = -34.973851 kcal Electronic energy + Delta-G solvation = -29945.356652 eV Core-core repulsion = 25973.219433 eV Total energy + Delta-G solvation = -3972.137220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19144 -40.02318 -38.50329 -36.55769 -35.76030 -34.27822 -32.70906 -30.75698 -30.06150 -29.09743 -28.37432 -28.05083 -25.98656 -24.47303 -23.72507 -22.81450 -22.32460 -20.27158 -19.81482 -19.21288 -18.88669 -17.58917 -17.08670 -16.77284 -16.28500 -15.95165 -15.60655 -15.13201 -14.75851 -14.40528 -14.23808 -14.19285 -13.89324 -13.85721 -13.70567 -13.49342 -13.02502 -12.93141 -12.77697 -12.46426 -12.30054 -12.13139 -12.03013 -11.80417 -11.72617 -11.61912 -11.41420 -11.39989 -11.26081 -10.90447 -10.77255 -10.32814 -10.23836 -10.08782 -10.00094 -9.82981 -9.75250 -9.63433 -9.06298 -8.64777 -8.58694 -6.84557 -5.71534 -3.05237 2.27667 2.47196 2.56226 2.92004 3.40846 3.45229 3.46345 3.86455 3.98204 4.29011 4.48855 4.51575 4.59140 4.63013 4.73446 4.82596 4.87239 4.94595 5.01746 5.12685 5.18329 5.24213 5.29774 5.35024 5.38541 5.43530 5.50171 5.52339 5.57408 5.77027 5.81957 5.84118 5.90282 5.95289 6.11097 6.18037 6.19644 6.21210 6.30029 6.47064 6.51714 6.68301 6.75632 6.75801 7.47602 7.54484 7.59701 7.81626 7.84813 8.04574 8.24657 9.21264 9.81366 10.46646 11.40023 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.002450 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.716546 B =11426.799445 C =11859.123963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.119 4.119 6 H 0.117 0.883 7 C 0.537 3.463 8 O -0.535 6.535 9 N -0.612 5.612 10 C 0.097 3.903 11 C -0.118 4.118 12 C -0.083 4.083 13 C -0.131 4.131 14 C 0.178 3.822 15 N -0.605 5.605 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.151 3.849 25 C 0.133 3.867 26 C -0.145 4.145 27 C 0.521 3.479 28 O -0.531 6.531 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.253 0.747 45 H 0.025 0.975 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.110 0.890 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 -21.774 5.949 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.006 4.006 5 C -0.141 4.141 6 H 0.135 0.865 7 C 0.324 3.676 8 O -0.412 6.412 9 N -0.346 5.346 10 C -0.025 4.025 11 C -0.157 4.157 12 C -0.085 4.085 13 C -0.170 4.170 14 C 0.053 3.947 15 N -0.332 5.332 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.025 3.975 25 C 0.012 3.988 26 C -0.185 4.185 27 C 0.308 3.692 28 O -0.407 6.407 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.058 0.942 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.128 0.872 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.524 -21.970 5.963 23.210 hybrid contribution -0.129 0.789 -0.783 1.119 sum 4.394 -21.181 5.180 22.243 Atomic orbital electron populations 1.22171 0.95617 1.02412 1.02773 1.21359 0.94593 0.80770 1.03153 1.48385 1.65777 1.14046 1.07233 1.21947 1.00667 0.91101 0.86841 1.22147 1.02595 0.94093 0.95255 0.86485 1.19607 0.80712 0.83279 0.84024 1.90745 1.34927 1.85424 1.30107 1.48698 1.44131 1.08058 1.33667 1.22560 0.91031 0.98729 0.90216 1.22637 0.97277 0.94563 1.01177 1.21590 0.95067 0.94552 0.97276 1.22766 0.98876 0.98126 0.97188 1.21218 0.94305 0.93304 0.85836 1.44569 1.33203 1.34970 1.20454 1.18990 1.12214 1.07462 0.97058 0.90522 1.24788 0.98051 0.99441 0.98081 1.69946 1.20334 1.37008 1.29665 0.86209 0.77194 0.80855 0.81556 1.21157 1.21625 1.21202 1.21295 0.92349 0.88389 0.95501 1.21763 1.00374 0.79882 0.96787 1.22400 1.04381 0.96709 0.95052 1.20766 0.76759 0.87235 0.84409 1.90733 1.53820 1.75128 1.21034 0.92188 0.92134 0.91348 0.89960 0.90192 0.89615 0.89017 0.90915 0.90841 0.90506 0.89573 0.92161 0.91980 0.93640 0.93893 0.93707 0.95785 0.94193 0.90981 0.90724 0.87180 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.12 0.90 6.65 -4.04 -0.03 0.88 16 3 N -0.62 -5.63 2.93 -172.53 -0.51 -6.14 16 4 C 0.12 0.99 6.68 -3.22 -0.02 0.97 16 5 C -0.12 -1.01 2.78 -90.23 -0.25 -1.26 16 6 H 0.12 0.72 8.00 -51.93 -0.42 0.31 16 7 C 0.54 6.70 7.14 -10.99 -0.08 6.62 16 8 O -0.53 -8.81 15.91 5.56 0.09 -8.73 16 9 N -0.61 -7.60 3.34 -170.75 -0.57 -8.17 16 10 C 0.10 0.90 5.42 -2.16 -0.01 0.88 16 11 C -0.12 -1.27 6.07 -25.19 -0.15 -1.43 16 12 C -0.08 -1.27 0.61 -154.07 -0.09 -1.37 16 13 C -0.13 -2.22 5.79 -25.63 -0.15 -2.37 16 14 C 0.18 4.14 5.36 -2.83 -0.02 4.12 16 15 N -0.61 -14.84 3.41 -170.56 -0.58 -15.42 16 16 C -0.23 -6.26 10.28 -15.06 -0.15 -6.42 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -26.84 10.30 55.49 0.57 -26.27 16 20 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.15 2.88 6.26 -3.24 -0.02 2.86 16 25 C 0.13 2.12 6.07 -3.70 -0.02 2.09 16 26 C -0.15 -1.25 5.35 -26.74 -0.14 -1.39 16 27 C 0.52 5.74 8.02 -10.86 -0.09 5.65 16 28 O -0.53 -7.76 17.59 5.56 0.10 -7.67 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.94 7.05 -51.93 -0.37 0.57 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.19 16 37 H 0.07 0.48 7.54 -51.93 -0.39 0.09 16 38 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.09 0.83 7.76 -51.93 -0.40 0.43 16 40 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 41 H 0.06 0.96 7.80 -51.93 -0.40 0.55 16 42 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 43 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.02 0.45 8.05 -51.93 -0.42 0.04 16 46 H 0.04 0.76 7.66 -51.93 -0.40 0.36 16 47 H 0.07 1.25 7.58 -51.93 -0.39 0.86 16 48 H 0.07 1.37 7.78 -51.93 -0.40 0.97 16 49 H 0.11 1.03 7.89 -51.93 -0.41 0.62 16 50 H 0.11 0.75 7.70 -51.93 -0.40 0.35 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -34.09 391.16 -9.47 -43.56 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -8.50 Total: -2.76 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.94 Total: 8.68 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -1.09 Total: -55.99 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.19 Total: -16.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.09 -9.47 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041338879.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.590 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds