Wall clock time and date at job start Tue Mar 31 2020 19:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46775 * 2 1 4 4 C 1.46765 * 124.35332 * 89.99929 * 3 2 1 5 5 C 1.54484 * 105.47213 * 163.00263 * 4 3 2 6 6 H 1.08995 * 110.96621 * 267.29293 * 5 4 3 7 7 C 1.50703 * 110.96636 * 143.53592 * 5 4 3 8 8 O 1.21286 * 120.00217 * 359.97438 * 7 5 4 9 9 N 1.34780 * 119.99706 * 179.97438 * 7 5 4 10 10 C 1.47558 * 125.67646 * 359.69406 * 9 7 5 11 11 C 1.55434 * 104.88209 * 156.03201 * 10 9 7 12 12 C 1.53656 * 101.31320 * 35.82638 * 11 10 9 13 13 C 1.53655 * 111.41352 * 87.06471 * 12 11 10 14 14 C 1.55178 * 101.41955 * 155.03207 * 13 12 11 15 15 N 1.47566 * 105.00198 * 324.50606 * 14 13 12 16 16 C 1.36942 * 125.67001 * 203.82867 * 15 14 13 17 17 H 1.08007 * 119.99446 * 170.10605 * 16 15 14 18 18 C 1.38811 * 120.00296 * 350.11198 * 16 15 14 19 19 N 1.31612 * 119.99734 * 350.38195 * 18 16 15 20 20 Si 1.86800 * 119.99973 * 170.38315 * 18 16 15 21 21 H 1.48498 * 109.47187 * 94.14174 * 20 18 16 22 22 H 1.48503 * 109.47196 * 214.14159 * 20 18 16 23 23 H 1.48505 * 109.47271 * 334.14070 * 20 18 16 24 24 C 1.47403 * 108.65560 * 23.86481 * 15 14 13 25 25 C 1.47406 * 125.67052 * 179.97438 * 9 7 5 26 26 C 1.54618 * 101.76774 * 25.41499 * 5 4 3 27 27 C 1.34425 * 124.35012 * 270.01879 * 3 2 1 28 28 O 1.21288 * 124.93610 * 0.40846 * 27 3 2 29 29 H 1.08998 * 109.47297 * 300.00330 * 1 2 3 30 30 H 1.09003 * 109.46745 * 60.00129 * 1 2 3 31 31 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47297 * 239.99670 * 2 1 3 33 33 H 1.08999 * 109.46550 * 119.99140 * 2 1 3 34 34 H 1.09005 * 110.24472 * 282.00238 * 4 3 2 35 35 H 1.09000 * 110.24516 * 44.00345 * 4 3 2 36 36 H 1.08999 * 110.33382 * 275.02461 * 10 9 7 37 37 H 1.09004 * 110.33221 * 37.25631 * 10 9 7 38 38 H 1.09010 * 111.25147 * 277.75894 * 11 10 9 39 39 H 1.08998 * 110.95093 * 153.76876 * 11 10 9 40 40 H 1.09001 * 111.03401 * 273.06458 * 13 12 11 41 41 H 1.09000 * 111.03537 * 36.99216 * 13 12 11 42 42 H 1.08997 * 110.33352 * 205.62969 * 14 13 12 43 43 H 1.08996 * 110.33869 * 83.38366 * 14 13 12 44 44 H 0.97004 * 119.99811 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.98870 * 238.53487 * 24 15 14 46 46 H 1.09004 * 110.01533 * 117.24475 * 24 15 14 47 47 H 1.08993 * 109.98595 * 301.46019 * 25 9 7 48 48 H 1.09003 * 109.98583 * 62.76793 * 25 9 7 49 49 H 1.08997 * 110.48930 * 216.52488 * 26 5 4 50 50 H 1.09005 * 110.60156 * 93.93297 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1621 1.2117 5 6 3.1739 3.3445 0.7484 6 1 4.2327 3.1041 0.8444 7 6 2.8366 4.5991 1.5122 8 8 1.9700 4.5782 2.3605 9 7 3.4980 5.7444 1.2525 10 6 4.5740 5.9100 0.2565 11 6 4.5610 7.4234 -0.0974 12 6 4.2105 8.0479 1.2621 13 6 5.4698 8.2955 2.1071 14 6 4.9963 9.4464 3.0341 15 7 4.1011 10.2677 2.1965 16 6 3.8112 11.5910 2.3971 17 1 3.2734 12.1463 1.6429 18 6 4.2086 12.2186 3.5697 19 7 4.6926 11.5070 4.5655 20 14 4.0566 14.0731 3.7343 21 1 2.7665 14.4078 4.3891 22 1 5.1787 14.5907 4.5579 23 1 4.1038 14.6953 2.3867 24 6 3.5700 9.4267 1.1086 25 6 3.2707 7.0387 1.9205 26 6 2.7687 3.4757 -0.7379 27 6 2.2707 2.0965 -1.1098 28 8 2.1207 1.6945 -2.2443 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.3636 2.5306 1.6430 35 1 2.8327 1.5534 1.9381 36 1 5.5348 5.6269 0.6863 37 1 4.3642 5.3123 -0.6306 38 1 3.7959 7.6489 -0.8404 39 1 5.5428 7.7526 -0.4377 40 1 5.7329 7.4101 2.6858 41 1 6.3039 8.6145 1.4820 42 1 5.8485 10.0372 3.3698 43 1 4.4523 9.0448 3.8889 44 1 4.9700 11.9456 5.3851 45 1 3.8359 9.8556 0.1425 46 1 2.4864 9.3458 1.1946 47 1 2.2351 7.3507 1.7856 48 1 3.4996 6.9549 2.9829 49 1 3.6317 3.7465 -1.3462 50 1 1.9740 4.2126 -0.8552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041338880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:30 Heat of formation + Delta-G solvation = -35.055516 kcal Electronic energy + Delta-G solvation = -29799.166313 eV Core-core repulsion = 25827.025552 eV Total energy + Delta-G solvation = -3972.140761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.22094 -40.05327 -38.52830 -36.57799 -35.77296 -34.29975 -32.72435 -30.77608 -30.09991 -29.14432 -28.39427 -28.07639 -25.98573 -24.48779 -23.74741 -22.74291 -22.39073 -20.42270 -19.83440 -19.24086 -18.85572 -17.66272 -17.03511 -16.76485 -16.36254 -15.83896 -15.75739 -15.03028 -14.80266 -14.55855 -14.37056 -14.26598 -13.98611 -13.86211 -13.77590 -13.32555 -13.04116 -12.87346 -12.72285 -12.54867 -12.33166 -12.13201 -12.03152 -11.85304 -11.73060 -11.70150 -11.43058 -11.37447 -11.33134 -10.89342 -10.80840 -10.35381 -10.27875 -10.12637 -9.95421 -9.85720 -9.78948 -9.66769 -9.07903 -8.67827 -8.58973 -6.82862 -5.76721 -3.09135 2.24390 2.41862 2.55453 2.87989 3.38489 3.44364 3.46153 3.84110 3.96375 4.26317 4.47306 4.49195 4.57242 4.61432 4.70170 4.80533 4.86449 4.91368 4.99847 5.09271 5.10987 5.24823 5.27616 5.31812 5.35374 5.42788 5.47314 5.51595 5.55172 5.71043 5.81781 5.82780 5.88283 5.95427 6.07869 6.13912 6.16661 6.17695 6.28497 6.47915 6.52062 6.68936 6.73369 6.77640 7.43792 7.46084 7.55042 7.75810 7.82242 8.00650 8.23106 9.17025 9.78778 10.46108 11.36444 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.002252 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.226565 B =12433.068247 C =12711.347649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.619 5.619 4 C 0.116 3.884 5 C -0.119 4.119 6 H 0.117 0.883 7 C 0.537 3.463 8 O -0.535 6.535 9 N -0.611 5.611 10 C 0.094 3.906 11 C -0.118 4.118 12 C -0.080 4.080 13 C -0.133 4.133 14 C 0.173 3.827 15 N -0.603 5.603 16 C -0.229 4.229 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.151 3.849 25 C 0.128 3.872 26 C -0.145 4.145 27 C 0.521 3.479 28 O -0.531 6.531 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.027 0.973 44 H 0.253 0.747 45 H 0.030 0.970 46 H 0.024 0.976 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.112 0.888 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -21.493 -9.094 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.007 4.007 5 C -0.141 4.141 6 H 0.135 0.865 7 C 0.324 3.676 8 O -0.413 6.413 9 N -0.345 5.345 10 C -0.028 4.028 11 C -0.156 4.156 12 C -0.081 4.081 13 C -0.171 4.171 14 C 0.048 3.952 15 N -0.330 5.330 16 C -0.358 4.358 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.024 3.976 25 C 0.007 3.993 26 C -0.185 4.185 27 C 0.309 3.691 28 O -0.407 6.407 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.042 0.958 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.130 0.870 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.864 -21.704 -9.045 23.529 hybrid contribution -0.044 1.038 0.330 1.090 sum -0.908 -20.667 -8.715 22.447 Atomic orbital electron populations 1.22173 0.95626 1.02424 1.02748 1.21363 0.94580 0.80758 1.03190 1.48378 1.65798 1.13979 1.07230 1.22010 1.00729 0.91047 0.86879 1.22188 1.02622 0.94076 0.95234 0.86507 1.19622 0.81386 0.83278 0.83290 1.90739 1.32001 1.84658 1.33856 1.48653 1.36977 1.09599 1.39234 1.22618 0.90580 0.98115 0.91510 1.22703 1.02915 0.92788 0.97183 1.21521 0.96717 0.95252 0.94628 1.22914 0.95268 1.00159 0.98792 1.21470 0.94231 0.88760 0.90699 1.44609 1.51744 1.07213 1.29388 1.19007 1.32249 0.83735 1.00776 0.90635 1.24817 1.01818 0.98237 0.95498 1.69952 1.48401 1.33548 1.04574 0.86138 0.77245 0.85085 0.77490 1.21620 1.21635 1.20610 1.21093 0.95697 0.87851 0.92919 1.21906 0.99689 0.80562 0.97171 1.22386 1.04310 0.96770 0.95028 1.20751 0.76781 0.87195 0.84419 1.90736 1.53833 1.75121 1.21036 0.92135 0.92207 0.91337 0.89939 0.90164 0.88838 0.89622 0.90945 0.90613 0.90477 0.89493 0.92142 0.91673 0.91350 0.95538 0.93703 0.95225 0.95769 0.91007 0.90710 0.87010 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.12 0.87 6.65 -4.04 -0.03 0.85 16 3 N -0.62 -5.46 2.93 -172.41 -0.51 -5.97 16 4 C 0.12 0.95 6.71 -3.12 -0.02 0.93 16 5 C -0.12 -0.98 2.89 -90.14 -0.26 -1.24 16 6 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 7 C 0.54 6.51 7.11 -10.98 -0.08 6.43 16 8 O -0.54 -8.55 15.84 5.55 0.09 -8.46 16 9 N -0.61 -7.40 3.34 -170.69 -0.57 -7.97 16 10 C 0.09 0.86 6.60 -2.17 -0.01 0.85 16 11 C -0.12 -1.30 5.94 -25.10 -0.15 -1.45 16 12 C -0.08 -1.22 0.61 -154.02 -0.09 -1.31 16 13 C -0.13 -2.23 5.85 -25.24 -0.15 -2.37 16 14 C 0.17 3.99 5.39 -2.31 -0.01 3.97 16 15 N -0.60 -14.83 3.41 -170.41 -0.58 -15.41 16 16 C -0.23 -6.27 10.24 -15.06 -0.15 -6.42 16 17 H 0.08 2.00 7.85 -52.48 -0.41 1.59 16 18 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 19 N -0.92 -26.58 10.68 55.49 0.59 -25.99 16 20 Si 0.91 21.81 29.56 -169.99 -5.03 16.79 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.15 2.93 6.51 -3.65 -0.02 2.90 16 25 C 0.13 1.96 6.02 -3.64 -0.02 1.94 16 26 C -0.14 -1.20 5.38 -26.75 -0.14 -1.34 16 27 C 0.52 5.59 8.02 -10.86 -0.09 5.50 16 28 O -0.53 -7.61 17.60 5.55 0.10 -7.51 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.92 6.96 -51.93 -0.36 0.56 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.51 5.44 -51.93 -0.28 0.23 16 38 H 0.08 0.82 8.09 -51.92 -0.42 0.40 16 39 H 0.09 0.88 7.78 -51.93 -0.40 0.48 16 40 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 41 H 0.06 1.04 7.82 -51.93 -0.41 0.63 16 42 H 0.07 1.77 6.95 -51.93 -0.36 1.41 16 43 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.03 0.56 7.86 -51.93 -0.41 0.15 16 46 H 0.02 0.49 7.41 -51.93 -0.39 0.10 16 47 H 0.07 1.20 7.44 -51.93 -0.39 0.81 16 48 H 0.07 1.29 7.78 -51.93 -0.40 0.88 16 49 H 0.11 0.73 6.78 -51.93 -0.35 0.37 16 50 H 0.11 0.98 7.89 -51.93 -0.41 0.57 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -33.96 389.53 -9.31 -43.27 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -8.33 Total: -2.74 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -0.95 Total: 8.12 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -1.06 Total: -55.34 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.19 Total: -15.98 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.96 -9.31 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041338880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.217 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds