Wall clock time and date at job start Tue Mar 31 2020 19:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46775 * 2 1 4 4 C 1.46765 * 124.35332 * 89.99929 * 3 2 1 5 5 C 1.54484 * 105.47213 * 163.00263 * 4 3 2 6 6 H 1.08995 * 110.96621 * 267.29293 * 5 4 3 7 7 C 1.50703 * 110.96636 * 143.53592 * 5 4 3 8 8 O 1.21286 * 120.00217 * 359.97438 * 7 5 4 9 9 N 1.34780 * 119.99706 * 179.97438 * 7 5 4 10 10 C 1.47558 * 125.67646 * 359.69406 * 9 7 5 11 11 C 1.55434 * 104.88209 * 156.03201 * 10 9 7 12 12 C 1.53656 * 101.31320 * 35.82638 * 11 10 9 13 13 C 1.53655 * 111.41352 * 87.06471 * 12 11 10 14 14 C 1.55178 * 101.41955 * 155.03207 * 13 12 11 15 15 N 1.47566 * 105.00198 * 324.50606 * 14 13 12 16 16 C 1.36942 * 125.67001 * 203.82867 * 15 14 13 17 17 H 1.08007 * 119.99446 * 170.10605 * 16 15 14 18 18 C 1.38811 * 120.00296 * 350.11198 * 16 15 14 19 19 N 1.31612 * 119.99734 * 350.38195 * 18 16 15 20 20 Si 1.86800 * 119.99973 * 170.38315 * 18 16 15 21 21 H 1.48498 * 109.47187 * 94.14174 * 20 18 16 22 22 H 1.48503 * 109.47196 * 214.14159 * 20 18 16 23 23 H 1.48505 * 109.47271 * 334.14070 * 20 18 16 24 24 C 1.47403 * 108.65560 * 23.86481 * 15 14 13 25 25 C 1.47406 * 125.67052 * 179.97438 * 9 7 5 26 26 C 1.54618 * 101.76774 * 25.41499 * 5 4 3 27 27 C 1.34425 * 124.35012 * 270.01879 * 3 2 1 28 28 O 1.21288 * 124.93610 * 0.40846 * 27 3 2 29 29 H 1.08998 * 109.47297 * 300.00330 * 1 2 3 30 30 H 1.09003 * 109.46745 * 60.00129 * 1 2 3 31 31 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47297 * 239.99670 * 2 1 3 33 33 H 1.08999 * 109.46550 * 119.99140 * 2 1 3 34 34 H 1.09005 * 110.24472 * 282.00238 * 4 3 2 35 35 H 1.09000 * 110.24516 * 44.00345 * 4 3 2 36 36 H 1.08999 * 110.33382 * 275.02461 * 10 9 7 37 37 H 1.09004 * 110.33221 * 37.25631 * 10 9 7 38 38 H 1.09010 * 111.25147 * 277.75894 * 11 10 9 39 39 H 1.08998 * 110.95093 * 153.76876 * 11 10 9 40 40 H 1.09001 * 111.03401 * 273.06458 * 13 12 11 41 41 H 1.09000 * 111.03537 * 36.99216 * 13 12 11 42 42 H 1.08997 * 110.33352 * 205.62969 * 14 13 12 43 43 H 1.08996 * 110.33869 * 83.38366 * 14 13 12 44 44 H 0.97004 * 119.99811 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.98870 * 238.53487 * 24 15 14 46 46 H 1.09004 * 110.01533 * 117.24475 * 24 15 14 47 47 H 1.08993 * 109.98595 * 301.46019 * 25 9 7 48 48 H 1.09003 * 109.98583 * 62.76793 * 25 9 7 49 49 H 1.08997 * 110.48930 * 216.52488 * 26 5 4 50 50 H 1.09005 * 110.60156 * 93.93297 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1621 1.2117 5 6 3.1739 3.3445 0.7484 6 1 4.2327 3.1041 0.8444 7 6 2.8366 4.5991 1.5122 8 8 1.9700 4.5782 2.3605 9 7 3.4980 5.7444 1.2525 10 6 4.5740 5.9100 0.2565 11 6 4.5610 7.4234 -0.0974 12 6 4.2105 8.0479 1.2621 13 6 5.4698 8.2955 2.1071 14 6 4.9963 9.4464 3.0341 15 7 4.1011 10.2677 2.1965 16 6 3.8112 11.5910 2.3971 17 1 3.2734 12.1463 1.6429 18 6 4.2086 12.2186 3.5697 19 7 4.6926 11.5070 4.5655 20 14 4.0566 14.0731 3.7343 21 1 2.7665 14.4078 4.3891 22 1 5.1787 14.5907 4.5579 23 1 4.1038 14.6953 2.3867 24 6 3.5700 9.4267 1.1086 25 6 3.2707 7.0387 1.9205 26 6 2.7687 3.4757 -0.7379 27 6 2.2707 2.0965 -1.1098 28 8 2.1207 1.6945 -2.2443 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.3636 2.5306 1.6430 35 1 2.8327 1.5534 1.9381 36 1 5.5348 5.6269 0.6863 37 1 4.3642 5.3123 -0.6306 38 1 3.7959 7.6489 -0.8404 39 1 5.5428 7.7526 -0.4377 40 1 5.7329 7.4101 2.6858 41 1 6.3039 8.6145 1.4820 42 1 5.8485 10.0372 3.3698 43 1 4.4523 9.0448 3.8889 44 1 4.9700 11.9456 5.3851 45 1 3.8359 9.8556 0.1425 46 1 2.4864 9.3458 1.1946 47 1 2.2351 7.3507 1.7856 48 1 3.4996 6.9549 2.9829 49 1 3.6317 3.7465 -1.3462 50 1 1.9740 4.2126 -0.8552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041338880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:29 Heat of formation + Delta-G solvation = -57.346113 kcal Electronic energy + Delta-G solvation = -29800.132906 eV Core-core repulsion = 25827.025552 eV Total energy + Delta-G solvation = -3973.107354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06459 -41.09026 -39.69530 -37.47190 -37.14845 -35.04390 -34.37743 -32.20982 -30.84105 -30.64221 -29.69151 -28.79724 -27.46127 -25.95271 -24.52757 -23.85248 -23.17700 -22.23399 -20.60562 -20.22513 -20.01497 -18.84713 -18.38626 -17.72580 -17.28470 -16.79905 -16.68497 -16.64060 -16.10713 -15.73601 -15.62894 -15.37912 -14.98677 -14.65168 -14.57120 -14.38038 -14.23851 -14.04161 -13.78708 -13.68664 -13.32716 -13.28045 -13.08240 -12.94296 -12.93713 -12.85810 -12.63052 -12.53522 -12.44025 -12.27353 -12.01223 -11.98584 -11.83267 -11.58906 -11.41088 -11.25153 -11.13365 -10.77046 -10.65773 -9.79743 -9.67959 -8.84695 -7.87777 -5.21689 1.44570 1.46085 1.46870 1.51931 1.56732 1.76114 2.06873 2.49912 3.09177 3.28684 3.30966 3.48974 3.57451 3.66693 3.75202 3.81654 3.85084 4.09228 4.12765 4.22360 4.24566 4.32894 4.45236 4.46488 4.52779 4.53332 4.66567 4.67105 4.74481 4.78211 4.80620 4.82508 4.88793 4.92465 4.93950 5.01601 5.07843 5.10057 5.23810 5.26596 5.32888 5.40361 5.47932 5.53007 5.63001 5.76467 6.02996 6.21358 6.51459 7.04087 7.07989 7.09281 7.77507 8.43730 9.24176 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.002252 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.226565 B =12433.068247 C =12711.347649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.116 3.884 5 C -0.104 4.104 6 H 0.154 0.846 7 C 0.536 3.464 8 O -0.582 6.582 9 N -0.609 5.609 10 C 0.095 3.905 11 C -0.110 4.110 12 C -0.070 4.070 13 C -0.111 4.111 14 C 0.177 3.823 15 N -0.626 5.626 16 C -0.242 4.242 17 H 0.079 0.921 18 C -0.066 4.066 19 N -0.949 5.949 20 Si 0.976 3.024 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.267 1.267 24 C 0.145 3.855 25 C 0.134 3.866 26 C -0.138 4.138 27 C 0.514 3.486 28 O -0.574 6.574 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.032 0.968 43 H -0.012 1.012 44 H 0.247 0.753 45 H 0.044 0.956 46 H 0.012 0.988 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.140 0.860 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -23.152 -11.055 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.348 5.348 4 C -0.007 4.007 5 C -0.125 4.125 6 H 0.171 0.829 7 C 0.325 3.675 8 O -0.462 6.462 9 N -0.341 5.341 10 C -0.026 4.026 11 C -0.148 4.148 12 C -0.071 4.071 13 C -0.149 4.149 14 C 0.052 3.948 15 N -0.352 5.352 16 C -0.371 4.371 17 H 0.097 0.903 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.804 3.196 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.191 1.191 24 C 0.020 3.980 25 C 0.011 3.989 26 C -0.178 4.178 27 C 0.303 3.697 28 O -0.454 6.454 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.050 0.950 43 H 0.006 0.994 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.030 0.970 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.158 0.842 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.715 -23.387 -11.035 25.869 hybrid contribution -0.644 1.542 0.980 1.937 sum 0.072 -21.845 -10.055 24.048 Atomic orbital electron populations 1.22140 0.95786 1.03290 1.01369 1.21555 0.94461 0.80177 1.04283 1.48518 1.64806 1.14478 1.07015 1.22045 1.00232 0.91468 0.86909 1.22163 1.04521 0.91553 0.94256 0.82880 1.20307 0.80329 0.84117 0.82785 1.90729 1.34004 1.85426 1.36082 1.48688 1.37756 1.08289 1.39416 1.22890 0.90461 0.97170 0.92060 1.22736 1.04299 0.93570 0.94180 1.21360 0.95251 0.93063 0.97434 1.22730 0.96244 0.98091 0.97862 1.21264 0.92299 0.90137 0.91131 1.44950 1.52476 1.07201 1.30618 1.19402 1.31485 0.85438 1.00755 0.90335 1.25650 1.02308 1.02529 0.95427 1.70165 1.49772 1.34974 1.04852 0.85111 0.76700 0.80020 0.77765 1.21702 1.21914 1.19148 1.21303 0.95196 0.89711 0.91777 1.21558 0.98448 0.82749 0.96134 1.22394 1.05128 0.95082 0.95188 1.21150 0.76406 0.88096 0.84096 1.90715 1.55892 1.76116 1.22667 0.92400 0.94564 0.89434 0.90500 0.87361 0.90908 0.87114 0.88668 0.87137 0.89615 0.87399 0.90124 0.89794 0.94982 0.99410 0.94378 0.93788 0.97029 0.93304 0.93454 0.84243 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.12 1.44 6.65 86.38 0.57 2.02 16 3 N -0.62 -9.58 2.93 -817.96 -2.40 -11.97 16 4 C 0.12 1.61 6.71 86.83 0.58 2.19 16 5 C -0.10 -1.33 2.89 -10.48 -0.03 -1.36 16 6 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 7 C 0.54 11.90 7.11 87.66 0.62 12.52 16 8 O -0.58 -18.56 15.84 -3.05 -0.05 -18.61 16 9 N -0.61 -13.21 3.34 -812.33 -2.71 -15.93 16 10 C 0.10 1.26 6.60 87.01 0.57 1.83 16 11 C -0.11 -1.95 5.94 31.65 0.19 -1.76 16 12 C -0.07 -2.03 0.61 -51.87 -0.03 -2.06 16 13 C -0.11 -3.56 5.85 31.56 0.18 -3.38 16 14 C 0.18 8.44 5.39 86.92 0.47 8.90 16 15 N -0.63 -31.58 3.41 -693.06 -2.36 -33.94 16 16 C -0.24 -13.52 10.24 84.03 0.86 -12.66 16 17 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 18 C -0.07 -3.76 5.40 84.86 0.46 -3.30 16 19 N -0.95 -57.36 10.68 21.65 0.23 -57.13 16 20 Si 0.98 45.79 29.56 68.60 2.03 47.82 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C 0.15 5.62 6.51 86.14 0.56 6.18 16 25 C 0.13 4.08 6.02 86.15 0.52 4.60 16 26 C -0.14 -1.82 5.38 30.58 0.16 -1.65 16 27 C 0.51 10.02 8.02 87.90 0.71 10.73 16 28 O -0.57 -15.90 17.60 -3.05 -0.05 -15.95 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.07 7.93 -2.39 -0.02 1.05 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 1.37 6.96 -2.38 -0.02 1.35 16 35 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 0.78 5.44 -2.38 -0.01 0.76 16 38 H 0.09 1.44 8.09 -2.38 -0.02 1.42 16 39 H 0.11 1.57 7.78 -2.39 -0.02 1.55 16 40 H 0.08 2.28 7.94 -2.39 -0.02 2.27 16 41 H 0.08 2.42 7.82 -2.39 -0.02 2.40 16 42 H 0.03 1.73 6.95 -2.39 -0.02 1.71 16 43 H -0.01 -0.66 8.07 -2.39 -0.02 -0.68 16 44 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 45 H 0.04 1.59 7.86 -2.39 -0.02 1.57 16 46 H 0.01 0.48 7.41 -2.39 -0.02 0.46 16 47 H 0.05 1.69 7.44 -2.39 -0.02 1.67 16 48 H 0.05 1.69 7.78 -2.39 -0.02 1.67 16 49 H 0.14 1.08 6.78 -2.39 -0.02 1.06 16 50 H 0.10 1.58 7.89 -2.38 -0.02 1.56 16 Total: -1.00 -80.51 389.53 2.74 -77.77 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 0.92 Total: 6.60 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 7.14 Total: 21.34 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -7.24 Total: -118.98 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.10 Total: -34.56 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -80.51 2.74 -77.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041338880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.419 kcal (2) G-P(sol) polarization free energy of solvation -80.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds