Wall clock time and date at job start Tue Mar 31 2020 19:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47035 * 2 1 4 4 C 1.46761 * 124.35001 * 89.99961 * 3 2 1 5 5 C 1.54486 * 105.47623 * 163.00283 * 4 3 2 6 6 H 1.08996 * 110.96886 * 267.26585 * 5 4 3 7 7 C 1.50700 * 110.96946 * 143.53565 * 5 4 3 8 8 O 1.21283 * 119.99803 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99675 * 180.28108 * 7 5 4 10 10 C 1.47562 * 125.67737 * 359.41452 * 9 7 5 11 11 C 1.55432 * 104.87917 * 156.03340 * 10 9 7 12 12 C 1.53655 * 101.31178 * 35.83211 * 11 10 9 13 13 C 1.53657 * 111.42075 * 204.77397 * 12 11 10 14 14 C 1.55186 * 101.41487 * 272.73068 * 13 12 11 15 15 N 1.47566 * 105.00810 * 324.50573 * 14 13 12 16 16 C 1.36933 * 125.67305 * 203.89931 * 15 14 13 17 17 H 1.08001 * 119.99878 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00358 * 359.95432 * 16 15 14 19 19 N 1.31620 * 119.99768 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00254 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47167 * 90.00571 * 20 18 16 22 22 H 1.48505 * 109.47124 * 210.00406 * 20 18 16 23 23 H 1.48502 * 109.47278 * 330.00073 * 20 18 16 24 24 C 1.47403 * 108.65127 * 23.86093 * 15 14 13 25 25 C 1.47405 * 125.67133 * 179.72919 * 9 7 5 26 26 C 1.54631 * 101.76063 * 25.42069 * 5 4 3 27 27 C 1.34422 * 124.35252 * 270.02545 * 3 2 1 28 28 O 1.21280 * 124.94118 * 0.42224 * 27 3 2 29 29 H 1.08996 * 109.47094 * 299.99940 * 1 2 3 30 30 H 1.08997 * 109.47173 * 59.99915 * 1 2 3 31 31 H 1.09000 * 109.46938 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46668 * 240.00362 * 2 1 3 33 33 H 1.08999 * 109.47035 * 120.00601 * 2 1 3 34 34 H 1.09006 * 110.24554 * 44.00859 * 4 3 2 35 35 H 1.08999 * 110.25058 * 282.00436 * 4 3 2 36 36 H 1.08999 * 110.33464 * 275.02487 * 10 9 7 37 37 H 1.09000 * 110.33215 * 37.25889 * 10 9 7 38 38 H 1.08991 * 111.25411 * 277.75703 * 11 10 9 39 39 H 1.09004 * 110.94936 * 153.76745 * 11 10 9 40 40 H 1.08997 * 111.03302 * 30.76109 * 13 12 11 41 41 H 1.09001 * 111.03668 * 154.69825 * 13 12 11 42 42 H 1.09001 * 110.33574 * 205.62404 * 14 13 12 43 43 H 1.09003 * 110.42140 * 83.43106 * 14 13 12 44 44 H 0.97000 * 120.00288 * 179.97438 * 19 18 16 45 45 H 1.08991 * 109.98613 * 238.54196 * 24 15 14 46 46 H 1.09000 * 110.01803 * 117.24817 * 24 15 14 47 47 H 1.09005 * 109.98277 * 301.45156 * 25 9 7 48 48 H 1.08999 * 109.98969 * 62.71859 * 25 9 7 49 49 H 1.08995 * 110.48893 * 93.88132 * 26 5 4 50 50 H 1.08999 * 110.48560 * 216.52124 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1740 3.3444 0.7486 6 1 4.2328 3.1041 0.8450 7 6 2.8368 4.5990 1.5124 8 8 1.9708 4.5777 2.3613 9 7 3.4940 5.7457 1.2486 10 6 4.5692 5.9116 0.2517 11 6 4.5506 7.4238 -0.1075 12 6 4.1983 8.0516 1.2500 13 6 3.5303 9.4245 1.0769 14 6 4.7658 10.3615 1.0147 15 7 5.7440 9.7664 1.9456 16 6 6.7607 10.4368 2.5716 17 1 7.4261 9.9082 3.2381 18 6 6.9365 11.7957 2.3494 19 7 6.1255 12.4399 1.5372 20 14 8.3238 12.7100 3.2029 21 1 9.5413 12.6667 2.3538 22 1 7.9237 14.1231 3.4228 23 1 8.6093 12.0672 4.5108 24 6 5.4441 8.3304 2.0900 25 6 3.2627 7.0413 1.9126 26 6 2.7686 3.4757 -0.7378 27 6 2.2707 2.0965 -1.1098 28 8 2.1204 1.6948 -2.2442 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.8328 1.5532 1.9381 35 1 1.3637 2.5304 1.6431 36 1 5.5311 5.6335 0.6822 37 1 4.3612 5.3101 -0.6333 38 1 3.7846 7.6439 -0.8509 39 1 5.5312 7.7553 -0.4491 40 1 2.9595 9.4676 0.1494 41 1 2.9004 9.6640 1.9336 42 1 4.4960 11.3662 1.3402 43 1 5.1726 10.3880 0.0038 44 1 6.2480 13.3896 1.3822 45 1 5.2488 8.0940 3.1359 46 1 6.2810 7.7358 1.7238 47 1 2.2259 7.3493 1.7773 48 1 3.4918 6.9615 2.9752 49 1 1.9734 4.2122 -0.8527 50 1 3.6316 3.7466 -1.3461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041338881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:34 Heat of formation + Delta-G solvation = -33.240040 kcal Electronic energy + Delta-G solvation = -29759.912531 eV Core-core repulsion = 25787.850495 eV Total energy + Delta-G solvation = -3972.062036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.23399 -40.05265 -38.55389 -36.59198 -35.77141 -34.31807 -32.76493 -30.66645 -30.04417 -29.40209 -28.34981 -28.07134 -25.85249 -24.59824 -23.64532 -22.83934 -22.39660 -20.39853 -19.84212 -19.28455 -18.80940 -17.64858 -17.03854 -16.87280 -16.32293 -15.87311 -15.77010 -15.03582 -14.83756 -14.58250 -14.33387 -14.27914 -13.99900 -13.84137 -13.77954 -13.44203 -12.92723 -12.83210 -12.64923 -12.54794 -12.42782 -12.33371 -11.97109 -11.86206 -11.70352 -11.57871 -11.45533 -11.44247 -11.21790 -10.94251 -10.81599 -10.33637 -10.26683 -10.10011 -10.00778 -9.86709 -9.80885 -9.53675 -9.08942 -8.71883 -8.67346 -6.87699 -5.69214 -3.10759 2.23898 2.38741 2.53791 2.86068 3.37339 3.42659 3.44484 3.83345 3.95496 4.25622 4.44658 4.48394 4.61147 4.62031 4.69750 4.79353 4.87470 4.93997 4.98585 5.09193 5.11571 5.25261 5.29271 5.33265 5.35819 5.43887 5.46744 5.51827 5.53647 5.73381 5.77662 5.80053 5.87146 5.96746 6.08170 6.15140 6.17015 6.20713 6.29993 6.49521 6.57850 6.67978 6.72577 6.77530 7.40395 7.46407 7.58397 7.81642 7.81830 7.96421 8.31749 9.17985 9.78620 10.43334 11.34728 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032358 B = 0.002200 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.120538 B =12724.843014 C =12882.891304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.117 3.883 5 C -0.120 4.120 6 H 0.118 0.882 7 C 0.539 3.461 8 O -0.539 6.539 9 N -0.610 5.610 10 C 0.093 3.907 11 C -0.113 4.113 12 C -0.082 4.082 13 C -0.131 4.131 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.152 3.848 25 C 0.125 3.875 26 C -0.145 4.145 27 C 0.521 3.479 28 O -0.530 6.530 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.013 0.987 44 H 0.252 0.748 45 H 0.025 0.975 46 H 0.023 0.977 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.110 0.890 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -21.333 -3.361 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.006 4.006 5 C -0.142 4.142 6 H 0.136 0.864 7 C 0.326 3.674 8 O -0.417 6.417 9 N -0.343 5.343 10 C -0.030 4.030 11 C -0.151 4.151 12 C -0.083 4.083 13 C -0.170 4.170 14 C 0.030 3.970 15 N -0.330 5.330 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.026 3.974 25 C 0.003 3.997 26 C -0.185 4.185 27 C 0.309 3.691 28 O -0.406 6.406 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.031 0.969 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.041 0.959 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.128 0.872 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.390 -21.495 -3.458 23.332 hybrid contribution 0.874 0.512 0.489 1.125 sum -7.516 -20.983 -2.969 22.485 Atomic orbital electron populations 1.22171 0.95643 1.02420 1.02711 1.21361 0.94558 0.80772 1.03212 1.48373 1.65849 1.13977 1.07220 1.21999 1.00651 0.91057 0.86896 1.22195 1.02710 0.94034 0.95262 0.86444 1.19620 0.81287 0.83304 0.83212 1.90720 1.32166 1.84792 1.33999 1.48640 1.37117 1.09291 1.39265 1.22682 0.90500 0.98409 0.91393 1.22677 1.03426 0.92244 0.96785 1.21557 0.96487 0.95148 0.95123 1.22876 0.99540 0.94036 1.00544 1.21967 0.85039 0.97710 0.92313 1.44618 1.33828 1.02305 1.52254 1.19058 1.04760 0.91053 1.20192 0.90543 1.24784 0.99465 0.96564 0.99859 1.69794 1.38679 1.08729 1.39847 0.86079 0.81338 0.79181 0.78933 1.21652 1.21657 1.20718 1.21127 0.92709 0.87757 0.95847 1.21942 0.99687 0.80999 0.97076 1.22392 1.04325 0.96746 0.95030 1.20749 0.76770 0.87198 0.84421 1.90736 1.53756 1.75113 1.21030 0.92172 0.92207 0.91337 0.89927 0.90168 0.89646 0.88897 0.90801 0.90551 0.90573 0.89094 0.91969 0.91831 0.87714 0.96863 0.93715 0.95710 0.95891 0.91108 0.91005 0.87206 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.12 0.86 6.65 -4.04 -0.03 0.83 16 3 N -0.62 -5.40 2.93 -172.41 -0.51 -5.91 16 4 C 0.12 0.93 6.71 -3.12 -0.02 0.91 16 5 C -0.12 -0.98 2.89 -90.13 -0.26 -1.24 16 6 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 7 C 0.54 6.29 7.11 -10.98 -0.08 6.21 16 8 O -0.54 -8.11 15.84 5.55 0.09 -8.02 16 9 N -0.61 -7.23 3.34 -170.69 -0.57 -7.80 16 10 C 0.09 0.93 6.62 -2.17 -0.01 0.91 16 11 C -0.11 -1.42 5.87 -25.10 -0.15 -1.57 16 12 C -0.08 -1.26 0.61 -154.02 -0.09 -1.36 16 13 C -0.13 -2.27 5.93 -25.23 -0.15 -2.42 16 14 C 0.15 3.52 5.83 -2.30 -0.01 3.51 16 15 N -0.60 -14.66 3.41 -170.41 -0.58 -15.24 16 16 C -0.22 -5.99 10.28 -15.06 -0.15 -6.15 16 17 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.16 10.09 55.49 0.56 -25.60 16 20 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.15 2.91 6.39 -3.64 -0.02 2.89 16 25 C 0.12 1.75 6.13 -3.64 -0.02 1.73 16 26 C -0.14 -1.21 5.38 -26.74 -0.14 -1.35 16 27 C 0.52 5.60 8.02 -10.86 -0.09 5.51 16 28 O -0.53 -7.64 17.60 5.56 0.10 -7.54 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.88 6.96 -51.93 -0.36 0.51 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.58 5.43 -51.93 -0.28 0.30 16 38 H 0.08 0.89 7.82 -51.93 -0.41 0.48 16 39 H 0.09 1.25 7.94 -51.93 -0.41 0.83 16 40 H 0.06 0.95 7.78 -51.93 -0.40 0.55 16 41 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 42 H 0.11 2.75 5.89 -51.93 -0.31 2.44 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.03 0.49 7.44 -51.93 -0.39 0.11 16 46 H 0.02 0.44 7.78 -51.93 -0.40 0.03 16 47 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 48 H 0.07 1.08 7.42 -51.93 -0.39 0.70 16 49 H 0.11 0.96 7.89 -51.93 -0.41 0.55 16 50 H 0.11 0.77 6.78 -51.93 -0.35 0.42 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -32.98 388.48 -9.31 -42.29 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.28 Total: -1.85 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.95 Total: 7.22 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -1.10 Total: -54.55 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.19 Total: -15.56 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.98 -9.31 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041338881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.048 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds