Wall clock time and date at job start Tue Mar 31 2020 19:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47035 * 2 1 4 4 C 1.46761 * 124.35001 * 89.99961 * 3 2 1 5 5 C 1.54486 * 105.47623 * 163.00283 * 4 3 2 6 6 H 1.08996 * 110.96886 * 267.26585 * 5 4 3 7 7 C 1.50700 * 110.96946 * 143.53565 * 5 4 3 8 8 O 1.21283 * 119.99803 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99675 * 180.28108 * 7 5 4 10 10 C 1.47562 * 125.67737 * 359.41452 * 9 7 5 11 11 C 1.55432 * 104.87917 * 156.03340 * 10 9 7 12 12 C 1.53655 * 101.31178 * 35.83211 * 11 10 9 13 13 C 1.53657 * 111.42075 * 204.77397 * 12 11 10 14 14 C 1.55186 * 101.41487 * 272.73068 * 13 12 11 15 15 N 1.47566 * 105.00810 * 324.50573 * 14 13 12 16 16 C 1.36933 * 125.67305 * 203.89931 * 15 14 13 17 17 H 1.08001 * 119.99878 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00358 * 359.95432 * 16 15 14 19 19 N 1.31620 * 119.99768 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00254 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47167 * 90.00571 * 20 18 16 22 22 H 1.48505 * 109.47124 * 210.00406 * 20 18 16 23 23 H 1.48502 * 109.47278 * 330.00073 * 20 18 16 24 24 C 1.47403 * 108.65127 * 23.86093 * 15 14 13 25 25 C 1.47405 * 125.67133 * 179.72919 * 9 7 5 26 26 C 1.54631 * 101.76063 * 25.42069 * 5 4 3 27 27 C 1.34422 * 124.35252 * 270.02545 * 3 2 1 28 28 O 1.21280 * 124.94118 * 0.42224 * 27 3 2 29 29 H 1.08996 * 109.47094 * 299.99940 * 1 2 3 30 30 H 1.08997 * 109.47173 * 59.99915 * 1 2 3 31 31 H 1.09000 * 109.46938 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46668 * 240.00362 * 2 1 3 33 33 H 1.08999 * 109.47035 * 120.00601 * 2 1 3 34 34 H 1.09006 * 110.24554 * 44.00859 * 4 3 2 35 35 H 1.08999 * 110.25058 * 282.00436 * 4 3 2 36 36 H 1.08999 * 110.33464 * 275.02487 * 10 9 7 37 37 H 1.09000 * 110.33215 * 37.25889 * 10 9 7 38 38 H 1.08991 * 111.25411 * 277.75703 * 11 10 9 39 39 H 1.09004 * 110.94936 * 153.76745 * 11 10 9 40 40 H 1.08997 * 111.03302 * 30.76109 * 13 12 11 41 41 H 1.09001 * 111.03668 * 154.69825 * 13 12 11 42 42 H 1.09001 * 110.33574 * 205.62404 * 14 13 12 43 43 H 1.09003 * 110.42140 * 83.43106 * 14 13 12 44 44 H 0.97000 * 120.00288 * 179.97438 * 19 18 16 45 45 H 1.08991 * 109.98613 * 238.54196 * 24 15 14 46 46 H 1.09000 * 110.01803 * 117.24817 * 24 15 14 47 47 H 1.09005 * 109.98277 * 301.45156 * 25 9 7 48 48 H 1.08999 * 109.98969 * 62.71859 * 25 9 7 49 49 H 1.08995 * 110.48893 * 93.88132 * 26 5 4 50 50 H 1.08999 * 110.48560 * 216.52124 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1740 3.3444 0.7486 6 1 4.2328 3.1041 0.8450 7 6 2.8368 4.5990 1.5124 8 8 1.9708 4.5777 2.3613 9 7 3.4940 5.7457 1.2486 10 6 4.5692 5.9116 0.2517 11 6 4.5506 7.4238 -0.1075 12 6 4.1983 8.0516 1.2500 13 6 3.5303 9.4245 1.0769 14 6 4.7658 10.3615 1.0147 15 7 5.7440 9.7664 1.9456 16 6 6.7607 10.4368 2.5716 17 1 7.4261 9.9082 3.2381 18 6 6.9365 11.7957 2.3494 19 7 6.1255 12.4399 1.5372 20 14 8.3238 12.7100 3.2029 21 1 9.5413 12.6667 2.3538 22 1 7.9237 14.1231 3.4228 23 1 8.6093 12.0672 4.5108 24 6 5.4441 8.3304 2.0900 25 6 3.2627 7.0413 1.9126 26 6 2.7686 3.4757 -0.7378 27 6 2.2707 2.0965 -1.1098 28 8 2.1204 1.6948 -2.2442 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.8328 1.5532 1.9381 35 1 1.3637 2.5304 1.6431 36 1 5.5311 5.6335 0.6822 37 1 4.3612 5.3101 -0.6333 38 1 3.7846 7.6439 -0.8509 39 1 5.5312 7.7553 -0.4491 40 1 2.9595 9.4676 0.1494 41 1 2.9004 9.6640 1.9336 42 1 4.4960 11.3662 1.3402 43 1 5.1726 10.3880 0.0038 44 1 6.2480 13.3896 1.3822 45 1 5.2488 8.0940 3.1359 46 1 6.2810 7.7358 1.7238 47 1 2.2259 7.3493 1.7773 48 1 3.4918 6.9615 2.9752 49 1 1.9734 4.2122 -0.8527 50 1 3.6316 3.7466 -1.3461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041338881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:33 Heat of formation + Delta-G solvation = -53.928999 kcal Electronic energy + Delta-G solvation = -29760.809672 eV Core-core repulsion = 25787.850495 eV Total energy + Delta-G solvation = -3972.959176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06216 -41.08443 -39.69981 -37.47842 -37.12462 -35.04421 -34.39103 -32.10291 -30.84849 -30.74090 -29.66928 -28.78861 -27.44873 -25.84266 -24.42071 -24.06019 -23.17639 -22.18113 -20.60452 -20.26003 -19.94799 -18.85414 -18.41056 -17.73034 -17.27005 -16.82020 -16.69087 -16.61390 -15.97748 -15.84828 -15.57821 -15.43077 -14.98800 -14.66555 -14.50752 -14.38726 -14.12942 -13.96845 -13.81871 -13.66995 -13.50846 -13.23982 -13.08378 -12.96569 -12.93203 -12.73274 -12.67661 -12.54573 -12.43117 -12.26496 -12.00892 -12.00560 -11.74583 -11.49009 -11.43591 -11.26175 -11.09721 -10.77209 -10.70445 -9.79399 -9.68285 -8.84840 -7.75209 -5.18461 1.44429 1.48021 1.49061 1.52064 1.57694 1.76949 2.06885 2.50965 3.08832 3.28907 3.33317 3.47049 3.58142 3.67484 3.71334 3.84835 3.90295 4.09035 4.12847 4.23670 4.26437 4.28921 4.40347 4.46385 4.52901 4.53393 4.66119 4.67598 4.75623 4.78261 4.80403 4.82178 4.88460 4.90515 4.93945 5.00976 5.07583 5.10942 5.24782 5.25930 5.33538 5.38429 5.49538 5.53638 5.68921 5.86290 6.02931 6.34217 6.49617 7.03493 7.07688 7.13757 7.81307 8.44967 9.26409 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032358 B = 0.002200 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.120538 B =12724.843014 C =12882.891304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.118 3.882 5 C -0.108 4.108 6 H 0.148 0.852 7 C 0.540 3.460 8 O -0.576 6.576 9 N -0.609 5.609 10 C 0.098 3.902 11 C -0.111 4.111 12 C -0.072 4.072 13 C -0.117 4.117 14 C 0.158 3.842 15 N -0.626 5.626 16 C -0.235 4.235 17 H 0.079 0.921 18 C -0.068 4.068 19 N -0.948 5.948 20 Si 0.977 3.023 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.271 1.271 24 C 0.150 3.850 25 C 0.132 3.868 26 C -0.139 4.139 27 C 0.513 3.487 28 O -0.575 6.575 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.066 0.934 43 H -0.006 1.006 44 H 0.246 0.754 45 H 0.018 0.982 46 H 0.032 0.968 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.107 0.893 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 -23.640 -3.303 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.348 5.348 4 C -0.005 4.005 5 C -0.129 4.129 6 H 0.166 0.834 7 C 0.329 3.671 8 O -0.456 6.456 9 N -0.342 5.342 10 C -0.023 4.023 11 C -0.149 4.149 12 C -0.073 4.073 13 C -0.156 4.156 14 C 0.033 3.967 15 N -0.352 5.352 16 C -0.364 4.364 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.598 5.598 20 Si 0.806 3.194 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.196 1.196 24 C 0.025 3.975 25 C 0.009 3.991 26 C -0.179 4.179 27 C 0.302 3.698 28 O -0.455 6.455 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.012 0.988 44 H 0.056 0.944 45 H 0.036 0.964 46 H 0.050 0.950 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.125 0.875 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.878 -23.844 -3.376 25.338 hybrid contribution 0.680 1.204 0.526 1.479 sum -7.197 -22.641 -2.850 23.928 Atomic orbital electron populations 1.22132 0.95626 1.03295 1.01451 1.21555 0.94584 0.80159 1.04217 1.48515 1.64798 1.14478 1.07027 1.22047 1.00297 0.91328 0.86812 1.22178 1.04366 0.92029 0.94322 0.83448 1.20147 0.80317 0.83871 0.82752 1.90715 1.33732 1.85364 1.35778 1.48655 1.37591 1.08595 1.39334 1.22780 0.90399 0.96918 0.92205 1.22668 1.03283 0.93797 0.95167 1.21380 0.94705 0.94625 0.96552 1.22715 0.97338 0.93815 1.01748 1.21721 0.86936 0.97272 0.90764 1.44915 1.33590 1.04581 1.52146 1.19414 1.05344 0.91580 1.20034 0.90324 1.25588 1.01935 0.97506 1.01020 1.70054 1.40113 1.08406 1.41209 0.85096 0.78585 0.77479 0.78283 1.21362 1.22198 1.19614 1.21284 0.94770 0.85159 0.96313 1.21656 0.99086 0.81938 0.96373 1.22391 1.05011 0.95203 0.95254 1.21144 0.76405 0.88108 0.84123 1.90713 1.55886 1.76136 1.22741 0.92180 0.94575 0.89486 0.90708 0.87337 0.87188 0.90446 0.89793 0.87188 0.89047 0.90197 0.89350 0.92252 0.91598 0.98792 0.94438 0.96357 0.94990 0.91082 0.92328 0.87491 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 71.98 0.74 -1.32 16 2 C 0.12 1.40 6.65 86.38 0.57 1.97 16 3 N -0.62 -9.37 2.93 -817.99 -2.40 -11.76 16 4 C 0.12 1.52 6.71 86.83 0.58 2.11 16 5 C -0.11 -1.36 2.89 -10.48 -0.03 -1.39 16 6 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 7 C 0.54 11.07 7.11 87.66 0.62 11.70 16 8 O -0.58 -16.35 15.84 -3.04 -0.05 -16.40 16 9 N -0.61 -12.61 3.34 -812.34 -2.71 -15.32 16 10 C 0.10 1.59 6.62 87.01 0.58 2.16 16 11 C -0.11 -2.49 5.87 31.65 0.19 -2.30 16 12 C -0.07 -2.10 0.61 -51.86 -0.03 -2.13 16 13 C -0.12 -4.00 5.93 31.57 0.19 -3.82 16 14 C 0.16 7.38 5.83 86.93 0.51 7.89 16 15 N -0.63 -30.84 3.41 -693.04 -2.36 -33.20 16 16 C -0.23 -12.83 10.28 84.03 0.86 -11.96 16 17 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 18 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 19 N -0.95 -55.51 10.09 21.65 0.22 -55.30 16 20 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C 0.15 5.66 6.39 86.15 0.55 6.22 16 25 C 0.13 3.47 6.13 86.14 0.53 4.00 16 26 C -0.14 -1.87 5.38 30.59 0.16 -1.70 16 27 C 0.51 10.09 8.02 87.90 0.71 10.80 16 28 O -0.57 -16.15 17.60 -3.03 -0.05 -16.20 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.05 7.93 -2.39 -0.02 1.03 16 33 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.08 1.31 6.96 -2.39 -0.02 1.29 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 1.09 5.43 -2.39 -0.01 1.08 16 38 H 0.09 1.81 7.82 -2.39 -0.02 1.79 16 39 H 0.08 2.02 7.94 -2.39 -0.02 2.00 16 40 H 0.09 2.55 7.78 -2.39 -0.02 2.53 16 41 H 0.06 2.06 8.09 -2.39 -0.02 2.04 16 42 H 0.07 3.61 5.89 -2.39 -0.01 3.60 16 43 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 45 H 0.02 0.72 7.44 -2.39 -0.02 0.70 16 46 H 0.03 1.16 7.78 -2.39 -0.02 1.15 16 47 H 0.07 1.89 7.86 -2.38 -0.02 1.87 16 48 H 0.06 1.71 7.42 -2.39 -0.02 1.69 16 49 H 0.11 1.57 7.89 -2.39 -0.02 1.55 16 50 H 0.13 1.24 6.78 -2.39 -0.02 1.23 16 Total: -1.00 -74.98 388.48 2.78 -72.20 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.93 Total: 10.03 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 7.19 Total: 18.89 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -7.26 Total: -115.59 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.10 Total: -32.60 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.98 2.78 -72.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041338881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.271 kcal (2) G-P(sol) polarization free energy of solvation -74.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds