Wall clock time and date at job start Tue Mar 31 2020 19:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47167 * 2 1 4 4 C 1.46767 * 124.34989 * 270.02766 * 3 2 1 5 5 C 1.54480 * 105.47196 * 197.01484 * 4 3 2 6 6 H 1.09002 * 110.96660 * 92.70218 * 5 4 3 7 7 C 1.50699 * 111.00143 * 216.45063 * 5 4 3 8 8 O 1.21275 * 120.00114 * 353.84985 * 7 5 4 9 9 N 1.34781 * 119.99872 * 173.84854 * 7 5 4 10 10 C 1.47149 * 125.60004 * 0.03161 * 9 7 5 11 11 C 1.54624 * 107.34190 * 180.91534 * 10 9 7 12 12 C 1.53469 * 102.74757 * 20.65492 * 11 10 9 13 13 C 1.53492 * 111.82170 * 205.63603 * 12 11 10 14 14 C 1.55212 * 101.39220 * 271.72094 * 13 12 11 15 15 N 1.47578 * 105.02770 * 324.66763 * 14 13 12 16 16 C 1.36933 * 125.67985 * 203.83427 * 15 14 13 17 17 H 1.08001 * 119.99903 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99735 * 0.02562 * 16 15 14 19 19 N 1.31616 * 120.00441 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99777 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47182 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46775 * 120.00121 * 20 18 16 23 23 H 1.48499 * 109.47197 * 239.99974 * 20 18 16 24 24 C 1.47450 * 108.64739 * 23.83971 * 15 14 13 25 25 C 1.47756 * 125.59536 * 179.71539 * 9 7 5 26 26 C 1.54627 * 101.76630 * 334.58482 * 5 4 3 27 27 C 1.34413 * 124.34801 * 90.02693 * 3 2 1 28 28 O 1.21279 * 124.94390 * 359.85343 * 27 3 2 29 29 H 1.08998 * 109.47325 * 300.00020 * 1 2 3 30 30 H 1.08998 * 109.47422 * 59.99762 * 1 2 3 31 31 H 1.09002 * 109.47300 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46680 * 240.00306 * 2 1 3 33 33 H 1.08998 * 109.47422 * 120.00238 * 2 1 3 34 34 H 1.08993 * 110.24397 * 78.01614 * 4 3 2 35 35 H 1.08993 * 110.31831 * 316.05145 * 4 3 2 36 36 H 1.09007 * 109.87227 * 300.35266 * 10 9 7 37 37 H 1.08996 * 109.87642 * 61.33051 * 10 9 7 38 38 H 1.08998 * 110.76239 * 138.97280 * 11 10 9 39 39 H 1.09003 * 110.75784 * 262.34059 * 11 10 9 40 40 H 1.09004 * 111.03902 * 29.74492 * 13 12 11 41 41 H 1.09002 * 111.03558 * 153.68931 * 13 12 11 42 42 H 1.08998 * 110.32843 * 205.78589 * 14 13 12 43 43 H 1.08997 * 110.42268 * 83.60422 * 14 13 12 44 44 H 0.96990 * 120.00534 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.99403 * 238.44016 * 24 15 14 46 46 H 1.08997 * 109.99980 * 117.10216 * 24 15 14 47 47 H 1.09002 * 110.39542 * 276.45399 * 25 9 7 48 48 H 1.08993 * 110.39764 * 38.86047 * 25 9 7 49 49 H 1.09004 * 110.48593 * 266.11908 * 26 5 4 50 50 H 1.08998 * 110.60060 * 143.53091 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2938 2.1622 -1.2117 5 6 3.1741 3.3442 -0.7489 6 1 4.2328 3.1034 -0.8454 7 6 2.8376 4.5994 -1.5119 8 8 2.0521 4.5558 -2.4349 9 7 3.4096 5.7706 -1.1686 10 6 4.3753 5.9642 -0.0754 11 6 4.7369 7.4672 -0.0407 12 6 3.5576 8.1163 -0.7777 13 6 3.9516 9.4549 -1.4172 14 6 3.6754 10.4438 -0.2532 15 7 2.4881 9.9020 0.4357 16 6 1.6113 10.6225 1.2021 17 1 0.7694 10.1304 1.6663 18 6 1.8047 11.9852 1.3823 19 7 2.8304 12.5850 0.8162 20 14 0.6082 12.9681 2.4272 21 1 -0.4514 12.0668 2.9468 22 1 1.3359 13.5840 3.5659 23 1 -0.0106 14.0350 1.6001 24 6 2.4030 8.4557 0.1616 25 6 3.1749 7.0696 -1.8325 26 6 2.7698 3.4753 0.7378 27 6 2.2716 2.0960 1.1098 28 8 2.1268 1.6924 2.2442 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.3630 2.5310 -1.6424 35 1 2.8310 1.5544 -1.9397 36 1 3.9256 5.6694 0.8728 37 1 5.2698 5.3700 -0.2615 38 1 4.7957 7.8269 0.9865 39 1 5.6719 7.6519 -0.5698 40 1 5.0058 9.4611 -1.6941 41 1 3.3212 9.6778 -2.2781 42 1 3.4650 11.4394 -0.6440 43 1 4.5260 10.4770 0.4275 44 1 2.9653 13.5372 0.9418 45 1 1.4521 8.2225 -0.3174 46 1 2.5007 7.8939 1.0905 47 1 3.8086 7.1655 -2.7142 48 1 2.1247 7.1725 -2.1053 49 1 1.9748 4.2121 0.8535 50 1 3.6318 3.7467 1.3472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041338882.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:37 Heat of formation + Delta-G solvation = -33.885645 kcal Electronic energy + Delta-G solvation = -30052.103624 eV Core-core repulsion = 26080.013593 eV Total energy + Delta-G solvation = -3972.090031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19745 -40.02750 -38.51363 -36.53798 -35.76777 -34.27651 -32.74742 -30.68269 -30.02240 -29.38618 -28.30881 -28.01358 -25.87082 -24.57921 -23.60455 -22.86870 -22.30672 -20.37963 -19.79666 -19.27899 -18.81013 -17.57009 -17.00446 -16.80387 -16.38213 -15.93506 -15.56022 -15.08562 -14.85835 -14.46769 -14.24989 -14.20861 -13.98585 -13.83541 -13.71319 -13.42007 -13.08736 -12.84048 -12.64893 -12.53287 -12.33188 -12.26026 -12.00759 -11.78425 -11.65598 -11.54068 -11.41440 -11.37407 -11.25244 -10.92018 -10.82071 -10.31374 -10.23761 -10.06400 -9.98894 -9.85074 -9.78613 -9.53861 -9.04591 -8.71150 -8.64397 -6.86103 -5.68017 -3.09195 2.30882 2.42828 2.56610 2.89860 3.38640 3.44815 3.46881 3.87536 3.99181 4.29404 4.46069 4.53430 4.63050 4.63713 4.73796 4.83986 4.86680 4.98896 5.02962 5.13315 5.19461 5.25136 5.32535 5.36258 5.39526 5.45953 5.50551 5.54727 5.57787 5.73427 5.77767 5.85449 5.87644 5.92698 6.03082 6.17635 6.21345 6.24209 6.30946 6.50396 6.57732 6.70824 6.77819 6.79445 7.42114 7.47043 7.60693 7.82581 7.88055 7.98789 8.32957 9.19724 9.80185 10.44780 11.36178 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.002700 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.893902 B =10369.559992 C =11240.857486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.621 5.621 4 C 0.119 3.881 5 C -0.119 4.119 6 H 0.118 0.882 7 C 0.539 3.461 8 O -0.539 6.539 9 N -0.610 5.610 10 C 0.096 3.904 11 C -0.113 4.113 12 C -0.082 4.082 13 C -0.131 4.131 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.154 3.846 25 C 0.123 3.877 26 C -0.147 4.147 27 C 0.521 3.479 28 O -0.529 6.529 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.013 0.987 44 H 0.251 0.749 45 H 0.024 0.976 46 H 0.022 0.978 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.111 0.889 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -21.692 -5.967 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.356 5.356 4 C -0.004 4.004 5 C -0.141 4.141 6 H 0.136 0.864 7 C 0.327 3.673 8 O -0.416 6.416 9 N -0.343 5.343 10 C -0.027 4.027 11 C -0.151 4.151 12 C -0.083 4.083 13 C -0.170 4.170 14 C 0.030 3.970 15 N -0.330 5.330 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.028 3.972 25 C 0.001 3.999 26 C -0.187 4.187 27 C 0.309 3.691 28 O -0.405 6.405 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.031 0.969 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.040 0.960 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.130 0.870 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.307 -21.880 -5.790 23.039 hybrid contribution -0.486 0.545 0.541 0.909 sum 3.821 -21.334 -5.249 22.300 Atomic orbital electron populations 1.22175 0.95642 1.02395 1.02781 1.21353 0.94571 0.80797 1.03134 1.48378 1.65991 1.13968 1.07217 1.21960 1.00545 0.91060 0.86867 1.22182 1.02565 0.94006 0.95325 0.86448 1.19621 0.80438 0.83353 0.83920 1.90722 1.35073 1.85476 1.30346 1.48600 1.43983 1.07971 1.33740 1.22318 0.91817 0.98377 0.90185 1.22469 0.98030 0.92017 1.02591 1.21624 0.96253 0.94931 0.95518 1.22812 0.99716 0.94389 1.00047 1.21970 0.88045 0.97523 0.89509 1.44649 1.28522 1.01717 1.58139 1.19118 1.03696 0.90193 1.21908 0.90509 1.24770 0.98355 0.96597 1.00924 1.69796 1.29803 1.09601 1.47939 0.86016 0.80048 0.80048 0.79510 1.20528 1.21761 1.21736 1.21017 0.94026 0.87315 0.94826 1.22214 1.02138 0.80374 0.95155 1.22428 1.04517 0.96748 0.95031 1.20764 0.76735 0.87214 0.84412 1.90738 1.53698 1.75028 1.21025 0.92142 0.92182 0.91364 0.90236 0.89944 0.89084 0.89684 0.90954 0.91410 0.89258 0.90550 0.91913 0.91781 0.87708 0.96876 0.93785 0.95797 0.96001 0.91214 0.90121 0.87043 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.12 0.93 6.65 -4.04 -0.03 0.90 16 3 N -0.62 -5.79 2.93 -172.42 -0.51 -6.30 16 4 C 0.12 0.99 6.67 -3.12 -0.02 0.97 16 5 C -0.12 -1.01 3.03 -90.14 -0.27 -1.29 16 6 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 7 C 0.54 6.46 7.13 -10.98 -0.08 6.38 16 8 O -0.54 -8.27 15.85 5.56 0.09 -8.18 16 9 N -0.61 -7.32 3.34 -170.87 -0.57 -7.89 16 10 C 0.10 0.96 6.07 -2.83 -0.02 0.94 16 11 C -0.11 -1.41 5.79 -25.63 -0.15 -1.56 16 12 C -0.08 -1.27 0.61 -153.95 -0.09 -1.36 16 13 C -0.13 -2.24 6.06 -25.30 -0.15 -2.39 16 14 C 0.15 3.53 5.85 -2.28 -0.01 3.52 16 15 N -0.60 -14.89 3.41 -170.44 -0.58 -15.47 16 16 C -0.22 -6.05 10.28 -15.06 -0.15 -6.21 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.36 10.10 55.49 0.56 -25.80 16 20 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.15 3.05 6.45 -3.70 -0.02 3.02 16 25 C 0.12 1.71 5.92 -3.12 -0.02 1.69 16 26 C -0.15 -1.38 4.94 -26.74 -0.13 -1.51 16 27 C 0.52 6.06 8.02 -10.86 -0.09 5.98 16 28 O -0.53 -8.14 17.59 5.56 0.10 -8.05 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 34 H 0.09 0.91 7.06 -51.93 -0.37 0.54 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.69 6.19 -51.93 -0.32 0.37 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 1.23 7.94 -51.93 -0.41 0.82 16 39 H 0.08 0.84 7.80 -51.93 -0.41 0.44 16 40 H 0.06 0.92 7.76 -51.93 -0.40 0.52 16 41 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 42 H 0.11 2.76 5.89 -51.93 -0.31 2.45 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.02 0.50 7.60 -51.93 -0.39 0.10 16 46 H 0.02 0.43 7.78 -51.93 -0.40 0.03 16 47 H 0.07 0.89 8.06 -51.93 -0.42 0.48 16 48 H 0.08 1.26 7.62 -51.93 -0.40 0.87 16 49 H 0.11 1.17 7.89 -51.93 -0.41 0.76 16 50 H 0.11 0.89 7.15 -51.93 -0.37 0.52 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -33.48 389.34 -9.39 -42.87 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.37 Total: -1.73 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.96 Total: 7.77 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -1.10 Total: -55.45 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.19 Total: -16.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.48 -9.39 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041338882.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.988 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds