Wall clock time and date at job start Tue Mar 31 2020 19:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47167 * 2 1 4 4 C 1.46767 * 124.34989 * 270.02766 * 3 2 1 5 5 C 1.54480 * 105.47196 * 197.01484 * 4 3 2 6 6 H 1.09002 * 110.96660 * 92.70218 * 5 4 3 7 7 C 1.50699 * 111.00143 * 216.45063 * 5 4 3 8 8 O 1.21275 * 120.00114 * 353.84985 * 7 5 4 9 9 N 1.34781 * 119.99872 * 173.84854 * 7 5 4 10 10 C 1.47149 * 125.60004 * 0.03161 * 9 7 5 11 11 C 1.54624 * 107.34190 * 180.91534 * 10 9 7 12 12 C 1.53469 * 102.74757 * 20.65492 * 11 10 9 13 13 C 1.53492 * 111.82170 * 205.63603 * 12 11 10 14 14 C 1.55212 * 101.39220 * 271.72094 * 13 12 11 15 15 N 1.47578 * 105.02770 * 324.66763 * 14 13 12 16 16 C 1.36933 * 125.67985 * 203.83427 * 15 14 13 17 17 H 1.08001 * 119.99903 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99735 * 0.02562 * 16 15 14 19 19 N 1.31616 * 120.00441 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99777 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47182 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46775 * 120.00121 * 20 18 16 23 23 H 1.48499 * 109.47197 * 239.99974 * 20 18 16 24 24 C 1.47450 * 108.64739 * 23.83971 * 15 14 13 25 25 C 1.47756 * 125.59536 * 179.71539 * 9 7 5 26 26 C 1.54627 * 101.76630 * 334.58482 * 5 4 3 27 27 C 1.34413 * 124.34801 * 90.02693 * 3 2 1 28 28 O 1.21279 * 124.94390 * 359.85343 * 27 3 2 29 29 H 1.08998 * 109.47325 * 300.00020 * 1 2 3 30 30 H 1.08998 * 109.47422 * 59.99762 * 1 2 3 31 31 H 1.09002 * 109.47300 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46680 * 240.00306 * 2 1 3 33 33 H 1.08998 * 109.47422 * 120.00238 * 2 1 3 34 34 H 1.08993 * 110.24397 * 78.01614 * 4 3 2 35 35 H 1.08993 * 110.31831 * 316.05145 * 4 3 2 36 36 H 1.09007 * 109.87227 * 300.35266 * 10 9 7 37 37 H 1.08996 * 109.87642 * 61.33051 * 10 9 7 38 38 H 1.08998 * 110.76239 * 138.97280 * 11 10 9 39 39 H 1.09003 * 110.75784 * 262.34059 * 11 10 9 40 40 H 1.09004 * 111.03902 * 29.74492 * 13 12 11 41 41 H 1.09002 * 111.03558 * 153.68931 * 13 12 11 42 42 H 1.08998 * 110.32843 * 205.78589 * 14 13 12 43 43 H 1.08997 * 110.42268 * 83.60422 * 14 13 12 44 44 H 0.96990 * 120.00534 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.99403 * 238.44016 * 24 15 14 46 46 H 1.08997 * 109.99980 * 117.10216 * 24 15 14 47 47 H 1.09002 * 110.39542 * 276.45399 * 25 9 7 48 48 H 1.08993 * 110.39764 * 38.86047 * 25 9 7 49 49 H 1.09004 * 110.48593 * 266.11908 * 26 5 4 50 50 H 1.08998 * 110.60060 * 143.53091 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2938 2.1622 -1.2117 5 6 3.1741 3.3442 -0.7489 6 1 4.2328 3.1034 -0.8454 7 6 2.8376 4.5994 -1.5119 8 8 2.0521 4.5558 -2.4349 9 7 3.4096 5.7706 -1.1686 10 6 4.3753 5.9642 -0.0754 11 6 4.7369 7.4672 -0.0407 12 6 3.5576 8.1163 -0.7777 13 6 3.9516 9.4549 -1.4172 14 6 3.6754 10.4438 -0.2532 15 7 2.4881 9.9020 0.4357 16 6 1.6113 10.6225 1.2021 17 1 0.7694 10.1304 1.6663 18 6 1.8047 11.9852 1.3823 19 7 2.8304 12.5850 0.8162 20 14 0.6082 12.9681 2.4272 21 1 -0.4514 12.0668 2.9468 22 1 1.3359 13.5840 3.5659 23 1 -0.0106 14.0350 1.6001 24 6 2.4030 8.4557 0.1616 25 6 3.1749 7.0696 -1.8325 26 6 2.7698 3.4753 0.7378 27 6 2.2716 2.0960 1.1098 28 8 2.1268 1.6924 2.2442 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.3630 2.5310 -1.6424 35 1 2.8310 1.5544 -1.9397 36 1 3.9256 5.6694 0.8728 37 1 5.2698 5.3700 -0.2615 38 1 4.7957 7.8269 0.9865 39 1 5.6719 7.6519 -0.5698 40 1 5.0058 9.4611 -1.6941 41 1 3.3212 9.6778 -2.2781 42 1 3.4650 11.4394 -0.6440 43 1 4.5260 10.4770 0.4275 44 1 2.9653 13.5372 0.9418 45 1 1.4521 8.2225 -0.3174 46 1 2.5007 7.8939 1.0905 47 1 3.8086 7.1655 -2.7142 48 1 2.1247 7.1725 -2.1053 49 1 1.9748 4.2121 0.8535 50 1 3.6318 3.7467 1.3472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041338882.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:36 Heat of formation + Delta-G solvation = -55.368362 kcal Electronic energy + Delta-G solvation = -30053.035185 eV Core-core repulsion = 26080.013593 eV Total energy + Delta-G solvation = -3973.021592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07067 -41.08198 -39.68421 -37.49038 -37.14215 -35.06439 -34.39532 -32.14920 -30.85218 -30.72927 -29.64944 -28.79437 -27.50980 -25.85439 -24.43992 -24.08142 -23.12173 -22.17132 -20.61628 -20.30905 -19.93376 -18.91913 -18.27918 -17.79617 -17.28244 -16.90196 -16.80968 -16.40851 -16.02803 -15.88846 -15.60092 -15.26227 -15.00740 -14.69389 -14.49618 -14.39134 -14.24638 -14.02398 -13.92269 -13.69934 -13.42546 -13.24016 -13.07400 -12.96790 -12.94987 -12.78394 -12.70473 -12.45429 -12.38933 -12.34684 -12.01845 -11.99687 -11.78235 -11.48506 -11.42315 -11.27082 -11.11923 -10.77234 -10.73275 -9.81070 -9.63743 -8.87435 -7.78051 -5.21229 1.43442 1.45530 1.45858 1.52486 1.56083 1.77594 2.07555 2.48335 3.07810 3.27218 3.30820 3.46034 3.57143 3.67970 3.76602 3.84479 3.91227 4.08383 4.12794 4.22889 4.27198 4.32203 4.38428 4.45189 4.51884 4.55722 4.65310 4.68915 4.73246 4.76045 4.79191 4.80572 4.87596 4.91732 4.93833 4.98967 5.10425 5.12715 5.23425 5.27494 5.32419 5.39038 5.46831 5.53270 5.69636 5.85154 6.00996 6.32846 6.50836 7.03062 7.07629 7.12118 7.78828 8.42181 9.23579 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.002700 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.893902 B =10369.559992 C =11240.857486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.119 3.881 5 C -0.104 4.104 6 H 0.156 0.844 7 C 0.539 3.461 8 O -0.577 6.577 9 N -0.610 5.610 10 C 0.098 3.902 11 C -0.109 4.109 12 C -0.074 4.074 13 C -0.115 4.115 14 C 0.156 3.844 15 N -0.626 5.626 16 C -0.238 4.238 17 H 0.073 0.927 18 C -0.064 4.064 19 N -0.946 5.946 20 Si 0.975 3.025 21 H -0.271 1.271 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.153 3.847 25 C 0.130 3.870 26 C -0.142 4.142 27 C 0.513 3.487 28 O -0.576 6.576 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.067 0.933 43 H -0.005 1.005 44 H 0.247 0.753 45 H 0.008 0.992 46 H 0.023 0.977 47 H 0.090 0.910 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 -23.954 -6.922 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.348 5.348 4 C -0.004 4.004 5 C -0.125 4.125 6 H 0.174 0.826 7 C 0.328 3.672 8 O -0.457 6.457 9 N -0.343 5.343 10 C -0.024 4.024 11 C -0.147 4.147 12 C -0.075 4.075 13 C -0.153 4.153 14 C 0.031 3.969 15 N -0.353 5.353 16 C -0.367 4.367 17 H 0.091 0.909 18 C -0.256 4.256 19 N -0.596 5.596 20 Si 0.804 3.196 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.028 3.972 25 C 0.008 3.992 26 C -0.182 4.182 27 C 0.302 3.698 28 O -0.456 6.456 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.013 0.987 44 H 0.057 0.943 45 H 0.026 0.974 46 H 0.041 0.959 47 H 0.108 0.892 48 H 0.074 0.926 49 H 0.114 0.886 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.076 -24.176 -6.770 25.830 hybrid contribution -1.108 1.248 0.820 1.859 sum 4.968 -22.928 -5.950 24.203 Atomic orbital electron populations 1.22145 0.95839 1.03312 1.01335 1.21564 0.94416 0.80103 1.04351 1.48522 1.64777 1.14510 1.06990 1.22042 1.00167 0.91413 0.86748 1.22181 1.04668 0.92038 0.93621 0.82598 1.20145 0.79487 0.84042 0.83533 1.90715 1.36641 1.86072 1.32275 1.48639 1.44351 1.07294 1.33987 1.22464 0.92939 0.97162 0.89810 1.22464 0.97536 0.93253 1.01457 1.21466 0.95883 0.94857 0.95312 1.22652 1.01769 0.93407 0.97511 1.21760 0.86806 0.97454 0.90833 1.44952 1.28530 1.03819 1.57964 1.19415 1.04186 0.90899 1.22174 0.90881 1.25546 1.00112 0.97548 1.02440 1.70044 1.31141 1.09398 1.48972 0.85057 0.78258 0.78478 0.77828 1.19585 1.21718 1.21784 1.21135 0.95405 0.84845 0.95773 1.21989 1.01058 0.80969 0.95211 1.22402 1.04765 0.95004 0.96070 1.21138 0.76425 0.88087 0.84189 1.90710 1.55927 1.76084 1.22847 0.94869 0.92213 0.89352 0.86979 0.90703 0.90938 0.86623 0.90417 0.87181 0.90858 0.88014 0.88496 0.92131 0.91524 0.98694 0.94300 0.97364 0.95914 0.89237 0.92628 0.88574 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 71.98 0.74 -1.63 16 2 C 0.12 1.54 6.65 86.38 0.57 2.11 16 3 N -0.61 -10.30 2.93 -818.00 -2.40 -12.70 16 4 C 0.12 1.64 6.67 86.83 0.58 2.22 16 5 C -0.10 -1.40 3.03 -10.48 -0.03 -1.43 16 6 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 7 C 0.54 11.51 7.13 87.66 0.63 12.14 16 8 O -0.58 -16.92 15.85 -3.01 -0.05 -16.97 16 9 N -0.61 -12.85 3.34 -812.89 -2.71 -15.57 16 10 C 0.10 1.56 6.07 86.81 0.53 2.09 16 11 C -0.11 -2.38 5.79 31.30 0.18 -2.20 16 12 C -0.07 -2.18 0.61 -51.82 -0.03 -2.21 16 13 C -0.11 -3.80 6.06 31.52 0.19 -3.61 16 14 C 0.16 7.32 5.85 86.93 0.51 7.83 16 15 N -0.63 -31.76 3.41 -693.14 -2.37 -34.12 16 16 C -0.24 -13.41 10.28 84.03 0.86 -12.55 16 17 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 18 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 19 N -0.95 -55.77 10.10 21.65 0.22 -55.55 16 20 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 C 0.15 6.15 6.45 86.08 0.56 6.71 16 25 C 0.13 3.36 5.92 86.29 0.51 3.87 16 26 C -0.14 -2.36 4.94 30.59 0.15 -2.21 16 27 C 0.51 11.36 8.02 87.90 0.71 12.07 16 28 O -0.58 -17.77 17.59 -3.03 -0.05 -17.83 16 29 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.13 7.93 -2.39 -0.02 1.12 16 34 H 0.07 1.33 7.06 -2.39 -0.02 1.32 16 35 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.20 6.19 -2.38 -0.01 1.18 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 1.88 7.94 -2.39 -0.02 1.86 16 39 H 0.10 1.76 7.80 -2.39 -0.02 1.74 16 40 H 0.10 2.57 7.76 -2.38 -0.02 2.55 16 41 H 0.06 2.05 8.09 -2.39 -0.02 2.03 16 42 H 0.07 3.65 5.89 -2.39 -0.01 3.64 16 43 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.25 14.13 8.31 -92.72 -0.77 13.36 16 45 H 0.01 0.36 7.60 -2.39 -0.02 0.34 16 46 H 0.02 0.91 7.78 -2.39 -0.02 0.89 16 47 H 0.09 2.01 8.06 -2.39 -0.02 1.99 16 48 H 0.06 1.72 7.62 -2.39 -0.02 1.71 16 49 H 0.10 1.93 7.89 -2.39 -0.02 1.91 16 50 H 0.13 1.66 7.15 -2.39 -0.02 1.64 16 Total: -1.00 -77.82 389.34 2.70 -75.12 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.92 Total: 9.55 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 7.11 Total: 20.05 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -7.26 Total: -117.94 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.10 Total: -34.80 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.82 2.70 -75.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041338882.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.750 kcal (2) G-P(sol) polarization free energy of solvation -77.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds