Wall clock time and date at job start Tue Mar 31 2020 19:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46910 * 109.46756 * 2 1 4 4 C 1.46899 * 110.99915 * 170.14950 * 3 2 1 5 5 C 1.53005 * 109.46534 * 297.72852 * 4 3 2 6 6 C 1.46902 * 110.99643 * 294.09680 * 3 2 1 7 7 C 1.50698 * 109.47087 * 170.00097 * 6 3 2 8 8 C 1.35135 * 125.61482 * 90.00008 * 7 6 3 9 9 C 1.40360 * 107.11680 * 180.02562 * 8 7 6 10 10 C 1.36546 * 106.70692 * 359.97438 * 9 8 7 11 11 C 1.46657 * 125.99098 * 179.97438 * 10 9 8 12 12 O 1.21700 * 119.99668 * 6.27131 * 11 10 9 13 13 N 1.34777 * 120.00411 * 186.27689 * 11 10 9 14 14 C 1.46504 * 119.99720 * 5.30867 * 13 11 10 15 15 C 1.46500 * 120.00203 * 185.30293 * 13 11 10 16 16 C 1.53496 * 114.20576 * 240.00067 * 15 13 11 17 17 N 1.47070 * 87.98334 * 220.14931 * 16 15 13 18 18 C 1.36932 * 136.05772 * 207.08967 * 17 16 15 19 19 H 1.08005 * 119.99973 * 354.62711 * 18 17 16 20 20 C 1.38811 * 120.00347 * 174.63290 * 18 17 16 21 21 N 1.31622 * 120.00423 * 183.49819 * 20 18 17 22 22 Si 1.86804 * 119.99788 * 3.49050 * 20 18 17 23 23 H 1.48499 * 109.47049 * 174.30446 * 22 20 18 24 24 H 1.48499 * 109.47094 * 294.30690 * 22 20 18 25 25 H 1.48498 * 109.46913 * 54.30522 * 22 20 18 26 26 C 1.47066 * 87.88647 * 27.34273 * 17 16 15 27 27 O 1.33932 * 125.61737 * 270.32668 * 7 6 3 28 28 H 1.09005 * 109.46557 * 65.37965 * 1 2 3 29 29 H 1.08997 * 109.46740 * 185.37167 * 1 2 3 30 30 H 1.08995 * 109.47458 * 305.37940 * 1 2 3 31 31 H 1.08995 * 109.47718 * 240.00269 * 2 1 3 32 32 H 1.08992 * 109.47273 * 119.99177 * 2 1 3 33 33 H 1.08996 * 109.47348 * 57.72872 * 4 3 2 34 34 H 1.08999 * 109.47077 * 177.73219 * 4 3 2 35 35 H 1.09002 * 109.46900 * 65.53235 * 5 4 3 36 36 H 1.09002 * 109.46777 * 185.52750 * 5 4 3 37 37 H 1.08993 * 109.47443 * 305.52589 * 5 4 3 38 38 H 1.08995 * 109.47457 * 49.99987 * 6 3 2 39 39 H 1.09005 * 109.46999 * 290.00049 * 6 3 2 40 40 H 1.08001 * 126.44112 * 0.02946 * 8 7 6 41 41 H 1.08003 * 126.65056 * 179.97438 * 9 8 7 42 42 H 1.08998 * 109.46796 * 275.83373 * 14 13 11 43 43 H 1.08998 * 109.46873 * 35.83102 * 14 13 11 44 44 H 1.08996 * 109.47045 * 155.82859 * 14 13 11 45 45 H 1.09001 * 113.27940 * 13.07034 * 15 13 11 46 46 H 1.09000 * 113.46646 * 105.37591 * 16 15 13 47 47 H 1.08998 * 113.46957 * 334.93016 * 16 15 13 48 48 H 0.96997 * 119.99553 * 5.00175 * 21 20 18 49 49 H 1.08999 * 113.46800 * 87.43605 * 26 17 16 50 50 H 1.08992 * 113.46936 * 217.87619 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4690 1.4311 0.2346 5 6 3.7807 0.8501 1.6153 6 6 1.6671 2.0680 -1.2520 7 6 1.9626 3.5400 -1.1217 8 6 3.1337 4.1381 -1.4330 9 6 2.9827 5.5073 -1.1636 10 6 1.7111 5.6775 -0.6962 11 6 1.1070 6.9490 -0.2849 12 8 1.7117 7.9920 -0.4515 13 7 -0.1176 6.9626 0.2778 14 6 -0.7964 5.7012 0.5852 15 6 -0.7699 8.2386 0.5821 16 6 -1.0984 8.4388 2.0681 17 7 -2.3756 9.0374 1.6516 18 6 -3.2522 9.9515 2.1721 19 1 -3.0946 10.3462 3.1650 20 6 -4.3436 10.3706 1.4238 21 7 -5.1476 11.2997 1.8959 22 14 -4.6713 9.6163 -0.2534 23 1 -5.9602 10.1289 -0.7835 24 1 -3.5730 9.9819 -1.1837 25 1 -4.7409 8.1384 -0.1264 26 6 -2.3000 8.2174 0.4331 27 8 1.1098 4.4699 -0.6725 28 1 -0.3632 0.4282 -0.9343 29 1 -0.3633 -1.0231 0.0962 30 1 -0.3634 0.5950 0.8378 31 1 1.8934 -0.5137 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.9796 0.8454 -0.5298 34 1 3.8117 2.4649 0.1896 35 1 3.5281 -0.2102 1.6287 36 1 4.8422 0.9735 1.8302 37 1 3.1940 1.3730 2.3705 38 1 0.6058 1.9272 -1.4563 39 1 2.2532 1.6508 -2.0709 40 1 4.0193 3.6536 -1.8169 41 1 3.7279 6.2771 -1.2995 42 1 -1.3099 5.3386 -0.3053 43 1 -0.0624 4.9627 0.9073 44 1 -1.5220 5.8639 1.3822 45 1 -0.2836 9.0937 0.1127 46 1 -0.4326 9.1416 2.5690 47 1 -1.2154 7.5042 2.6166 48 1 -4.9378 11.7430 2.7328 49 1 -2.7338 7.2244 0.5506 50 1 -2.6579 8.7314 -0.4589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044359819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:18 Heat of formation + Delta-G solvation = 65.754935 kcal Electronic energy + Delta-G solvation = -29560.339474 eV Core-core repulsion = 25592.570183 eV Total energy + Delta-G solvation = -3967.769292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.91560 -39.93975 -38.62515 -38.02436 -34.84693 -33.29227 -32.33524 -32.26010 -31.87472 -29.21523 -28.00186 -26.91145 -26.06338 -25.40932 -23.61982 -23.43642 -21.85143 -21.60194 -20.70882 -20.12267 -19.09351 -17.74345 -17.46165 -16.88666 -16.76716 -16.39608 -15.73849 -15.57703 -15.38440 -14.89806 -14.73211 -14.37264 -14.15151 -13.83219 -13.71771 -13.40017 -13.25549 -13.17268 -12.92245 -12.72269 -12.51888 -12.25957 -12.15313 -12.07287 -12.03878 -11.89737 -11.85287 -11.57903 -11.39350 -11.31958 -11.06232 -10.58475 -10.41554 -10.16111 -10.13986 -9.37282 -9.16399 -8.97429 -8.95632 -8.69713 -8.30852 -7.19639 -6.33226 -3.27071 0.92967 2.08716 2.43022 3.06416 3.18932 3.39605 3.42954 3.46738 3.64238 4.21472 4.44445 4.54317 4.57342 4.61504 4.68173 4.73246 4.79429 4.87299 4.88769 5.02298 5.05805 5.06585 5.13293 5.25808 5.30208 5.37510 5.43973 5.45202 5.55079 5.57580 5.59473 5.60331 5.65587 5.69869 5.79712 5.83194 5.85687 5.94996 6.13418 6.16221 6.21063 6.35713 6.41485 6.48880 6.54234 6.71672 6.94418 7.04403 7.44253 8.10430 8.21085 8.94662 9.46050 10.29869 11.18301 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.002631 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.138229 B =10638.740579 C =11297.084619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.042 3.958 5 C -0.150 4.150 6 C 0.126 3.874 7 C 0.022 3.978 8 C -0.216 4.216 9 C -0.124 4.124 10 C -0.063 4.063 11 C 0.597 3.403 12 O -0.522 6.522 13 N -0.589 5.589 14 C 0.075 3.925 15 C 0.101 3.899 16 C 0.113 3.887 17 N -0.620 5.620 18 C -0.302 4.302 19 H 0.085 0.915 20 C -0.023 4.023 21 N -0.932 5.932 22 Si 1.072 2.928 23 H -0.294 1.294 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.085 3.915 27 O -0.145 6.145 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.052 0.948 47 H 0.041 0.959 48 H 0.262 0.738 49 H 0.049 0.951 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.090 -26.810 -6.800 33.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 N -0.261 5.261 4 C -0.085 4.085 5 C -0.208 4.208 6 C -0.001 4.001 7 C -0.032 4.032 8 C -0.236 4.236 9 C -0.145 4.145 10 C -0.116 4.116 11 C 0.385 3.615 12 O -0.401 6.401 13 N -0.321 5.321 14 C -0.068 4.068 15 C -0.003 4.003 16 C -0.015 4.015 17 N -0.348 5.348 18 C -0.428 4.428 19 H 0.103 0.897 20 C -0.222 4.222 21 N -0.574 5.574 22 Si 0.905 3.095 23 H -0.221 1.221 24 H -0.219 1.219 25 H -0.216 1.216 26 C -0.041 4.041 27 O -0.040 6.040 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.169 0.831 41 H 0.177 0.823 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.145 0.855 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.564 -25.864 -7.514 31.619 hybrid contribution 1.638 -0.574 0.673 1.862 sum 18.202 -26.438 -6.841 32.819 Atomic orbital electron populations 1.21855 0.94517 1.02000 1.02760 1.22164 0.96364 0.88049 1.01295 1.62048 1.14498 1.16049 1.33464 1.22231 0.86936 1.02078 0.97249 1.21821 1.01473 1.00705 0.96768 1.20566 1.03364 0.84638 0.91547 1.22502 0.89403 0.91257 0.99991 1.21534 0.98944 0.94015 1.09070 1.21885 0.95765 0.96862 0.99988 1.22167 0.94261 0.84425 1.10704 1.16714 0.81258 0.85525 0.78013 1.90873 1.61686 1.30857 1.56635 1.47833 1.16458 1.08217 1.59544 1.21955 0.98447 0.84554 1.01807 1.23672 0.93217 0.85037 0.98333 1.22755 0.88375 0.96559 0.93822 1.45782 1.23073 1.45085 1.20888 1.20145 1.05646 1.16089 1.00943 0.89730 1.25722 0.93570 0.98648 1.04237 1.70918 1.37877 1.25581 1.23026 0.83687 0.75015 0.75222 0.75546 1.22139 1.21899 1.21641 1.23263 0.92282 0.95745 0.92844 1.84254 1.40180 1.15253 1.64334 0.92648 0.92052 0.91326 0.94730 0.89889 0.94797 0.89915 0.92745 0.92103 0.91524 0.88232 0.91333 0.83128 0.82343 0.92195 0.90484 0.89855 0.85511 0.92942 0.94130 0.92837 0.93373 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.72 37.16 0.36 -0.49 16 2 C 0.05 0.27 5.52 -3.82 -0.02 0.25 16 3 N -0.53 -3.80 4.53 -236.07 -1.07 -4.87 16 4 C 0.04 0.28 5.49 -3.82 -0.02 0.25 16 5 C -0.15 -0.89 9.61 37.16 0.36 -0.53 16 6 C 0.13 0.88 5.36 -4.98 -0.03 0.85 16 7 C 0.02 0.21 6.23 -35.41 -0.22 -0.01 16 8 C -0.22 -2.01 9.21 -39.89 -0.37 -2.38 16 9 C -0.12 -1.47 10.63 -39.39 -0.42 -1.88 16 10 C -0.06 -0.86 6.70 -36.80 -0.25 -1.11 16 11 C 0.60 9.89 7.63 -12.86 -0.10 9.80 16 12 O -0.52 -10.11 16.41 5.19 0.09 -10.02 16 13 N -0.59 -9.60 3.12 -175.10 -0.55 -10.14 16 14 C 0.07 0.99 8.11 59.85 0.49 1.48 16 15 C 0.10 1.94 4.55 -67.68 -0.31 1.63 16 16 C 0.11 2.31 8.23 -8.50 -0.07 2.24 16 17 N -0.62 -15.52 3.69 -184.60 -0.68 -16.20 16 18 C -0.30 -8.81 11.09 -15.06 -0.17 -8.97 16 19 H 0.09 2.58 8.05 -52.48 -0.42 2.16 16 20 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 21 N -0.93 -29.59 13.70 55.49 0.76 -28.83 16 22 Si 1.07 27.09 25.09 -169.99 -4.26 22.83 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.29 -6.99 6.38 56.52 0.36 -6.63 16 25 H -0.29 -6.77 6.65 56.52 0.38 -6.40 16 26 C 0.08 1.82 5.33 -8.36 -0.04 1.78 16 27 O -0.15 -1.74 7.54 4.98 0.04 -1.71 16 28 H 0.05 0.30 6.61 -51.93 -0.34 -0.05 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.03 0.17 8.12 -51.93 -0.42 -0.25 16 32 H 0.08 0.43 6.03 -51.93 -0.31 0.12 16 33 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.62 5.96 -51.93 -0.31 0.31 16 35 H 0.05 0.28 6.54 -51.93 -0.34 -0.06 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.65 6.18 -51.93 -0.32 0.33 16 39 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 40 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.16 1.75 8.06 -52.48 -0.42 1.32 16 42 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 43 H 0.08 0.94 6.00 -51.93 -0.31 0.62 16 44 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 45 H 0.13 2.59 7.33 -51.93 -0.38 2.21 16 46 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.04 0.78 7.05 -51.93 -0.37 0.41 16 48 H 0.26 8.19 8.73 -40.82 -0.36 7.84 16 49 H 0.05 0.97 6.37 -51.93 -0.33 0.64 16 50 H 0.06 1.34 4.00 -51.93 -0.21 1.13 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -33.92 387.27 -8.56 -42.49 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.82 Total: -1.49 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.90 Total: 2.12 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -1.54 Total: -60.05 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.12 Total: -11.73 kcal Atomic # 14 Polarization: 27.09 SS G_CDS: -4.26 Total: 22.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.92 -8.56 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044359819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.242 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds