Wall clock time and date at job start Tue Mar 31 2020 19:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47108 * 2 1 4 4 C 1.46763 * 124.34584 * 89.99774 * 3 2 1 5 5 C 1.54480 * 105.47176 * 196.99570 * 4 3 2 6 6 H 1.08998 * 110.97078 * 92.74548 * 5 4 3 7 7 C 1.50699 * 110.96905 * 216.46723 * 5 4 3 8 8 O 1.21279 * 120.00200 * 0.02562 * 7 5 4 9 9 N 1.35215 * 120.00177 * 180.02562 * 7 5 4 10 10 C 1.44358 * 119.80524 * 0.18128 * 9 7 5 11 11 C 1.51709 * 112.39519 * 263.51859 * 10 9 7 12 12 C 1.51256 * 114.19006 * 289.69017 * 11 10 9 13 13 H 1.09324 * 111.23955 * 182.56077 * 12 11 10 14 14 C 1.54548 * 107.47315 * 304.48038 * 12 11 10 15 15 C 1.54307 * 103.85178 * 85.91072 * 14 12 11 16 16 C 1.50769 * 104.85495 * 17.92142 * 15 14 12 17 17 H 1.09930 * 108.37367 * 117.20241 * 16 15 14 18 18 C 1.50617 * 118.55475 * 180.02562 * 9 7 5 19 19 N 1.48737 * 108.97381 * 59.65290 * 12 11 10 20 20 C 1.36399 * 128.52017 * 95.42356 * 19 12 11 21 21 H 1.08004 * 119.99855 * 334.79138 * 20 19 12 22 22 C 1.38808 * 120.00008 * 154.78692 * 20 19 12 23 23 N 1.31613 * 120.00537 * 328.35254 * 22 20 19 24 24 Si 1.86810 * 119.99914 * 148.35061 * 22 20 19 25 25 H 1.48499 * 109.46972 * 270.00718 * 24 22 20 26 26 H 1.48502 * 109.46742 * 30.00188 * 24 22 20 27 27 H 1.48498 * 109.47084 * 150.00243 * 24 22 20 28 28 C 1.54623 * 101.76443 * 334.58779 * 5 4 3 29 29 C 1.34410 * 124.35071 * 269.97878 * 3 2 1 30 30 O 1.21286 * 124.94376 * 359.60977 * 29 3 2 31 31 H 1.08999 * 109.46895 * 299.99791 * 1 2 3 32 32 H 1.09001 * 109.46977 * 60.00061 * 1 2 3 33 33 H 1.09001 * 109.46799 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46895 * 240.00209 * 2 1 3 35 35 H 1.09001 * 109.46977 * 119.99938 * 2 1 3 36 36 H 1.09002 * 110.24457 * 77.99498 * 4 3 2 37 37 H 1.08997 * 110.32250 * 316.03537 * 4 3 2 38 38 H 1.10107 * 107.62512 * 21.51520 * 10 9 7 39 39 H 1.07865 * 111.46485 * 138.81586 * 10 9 7 40 40 H 1.09113 * 108.69024 * 51.33112 * 11 10 9 41 41 H 1.09258 * 108.36630 * 168.55418 * 11 10 9 42 42 H 1.09127 * 110.59728 * 204.55661 * 14 12 11 43 43 H 1.09073 * 110.67723 * 327.12207 * 14 12 11 44 44 H 1.08435 * 111.83752 * 255.63171 * 15 14 12 45 45 H 1.10034 * 109.07800 * 135.75175 * 15 14 12 46 46 H 1.08523 * 109.41573 * 30.70197 * 18 9 7 47 47 H 1.08666 * 109.21473 * 269.37957 * 18 9 7 48 48 H 0.96999 * 119.99889 * 355.03873 * 23 22 20 49 49 H 1.08999 * 110.48745 * 143.48180 * 28 5 4 50 50 H 1.09007 * 110.48775 * 266.11759 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 2.3534 3.6345 0.7487 6 1 1.3789 4.1132 0.8452 7 6 3.4042 4.3983 1.5125 8 8 4.0651 3.8373 2.3607 9 7 3.6104 5.7090 1.2522 10 6 2.8187 6.3736 0.2444 11 6 3.5239 6.4343 -1.0974 12 6 4.7096 7.3728 -1.1326 13 1 5.1529 7.4135 -2.1311 14 6 4.2122 8.7659 -0.6852 15 6 4.3088 8.7160 0.8540 16 6 5.2337 7.5617 1.1460 17 1 6.1267 7.9531 1.6538 18 6 4.6693 6.4406 2.0345 19 7 5.7058 6.9314 -0.1202 20 6 6.8019 6.1388 -0.2962 21 1 6.8317 5.4321 -1.1124 22 6 7.8789 6.2407 0.5734 23 7 8.1688 7.3979 1.1294 24 14 8.9170 4.7351 0.9549 25 1 8.3514 4.0295 2.1328 26 1 8.9150 3.8228 -0.2167 27 1 10.3097 5.1565 1.2519 28 6 2.7511 3.4819 -0.7377 29 6 2.2716 2.0961 -1.1097 30 8 2.1354 1.6895 -2.2442 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2498 1.8635 1.6432 37 1 1.4940 2.0271 1.9393 38 1 1.8968 5.7879 0.1048 39 1 2.5243 7.3616 0.5618 40 1 3.8621 5.4308 -1.3604 41 1 2.8020 6.7572 -1.8514 42 1 4.8570 9.5504 -1.0848 43 1 3.1806 8.9263 -1.0012 44 1 3.3350 8.5962 1.3156 45 1 4.7519 9.6554 1.2172 46 1 5.4621 5.7495 2.3021 47 1 4.2210 6.8742 2.9244 48 1 7.6759 8.1942 0.8770 49 1 2.2503 4.2350 -1.3459 50 1 3.8327 3.5549 -0.8527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045789660.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:07 Heat of formation + Delta-G solvation = -43.838893 kcal Electronic energy + Delta-G solvation = -31935.653232 eV Core-core repulsion = 27963.131596 eV Total energy + Delta-G solvation = -3972.521637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.16458 -40.99458 -39.61389 -37.44024 -36.20134 -34.91897 -34.85416 -33.25693 -31.24807 -30.74036 -29.17506 -28.47058 -27.37334 -25.92168 -24.91012 -23.80676 -23.15396 -21.32269 -21.10722 -20.43704 -19.46483 -19.30889 -18.56307 -17.92167 -17.47566 -16.73954 -16.40417 -16.33830 -16.11260 -15.78836 -15.63244 -15.23888 -15.09235 -14.92175 -14.74267 -14.39690 -14.16880 -14.03934 -13.90196 -13.44866 -13.39733 -13.30704 -12.95391 -12.89880 -12.79990 -12.67306 -12.54989 -12.40818 -12.28698 -12.06137 -12.01089 -11.87521 -11.77954 -11.65298 -11.47934 -11.20023 -10.83705 -10.54879 -10.43441 -9.81441 -9.50790 -8.87443 -8.20512 -5.30281 1.41113 1.47835 1.55023 1.60345 1.69760 1.84301 2.14508 2.56365 3.10948 3.15085 3.30887 3.51217 3.65630 3.80520 3.90020 3.93578 3.98383 4.09125 4.10352 4.16526 4.22962 4.33865 4.44660 4.47270 4.51036 4.52819 4.61605 4.65966 4.68476 4.78511 4.82120 4.86953 4.90656 4.92484 4.94578 5.05381 5.11166 5.17056 5.26712 5.27413 5.36872 5.47977 5.51939 5.61526 5.71899 5.79508 5.97747 6.35316 6.59326 6.95010 7.02013 7.23945 7.69525 8.46987 9.00433 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.004527 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.477505 B = 6184.285664 C = 7050.165649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.112 3.888 3 N -0.613 5.613 4 C 0.119 3.881 5 C -0.106 4.106 6 H 0.158 0.842 7 C 0.513 3.487 8 O -0.587 6.587 9 N -0.581 5.581 10 C 0.107 3.893 11 C -0.150 4.150 12 C 0.133 3.867 13 H 0.038 0.962 14 C -0.117 4.117 15 C -0.106 4.106 16 C 0.121 3.879 17 H 0.030 0.970 18 C 0.133 3.867 19 N -0.596 5.596 20 C -0.308 4.308 21 H 0.036 0.964 22 C -0.065 4.065 23 N -0.927 5.927 24 Si 1.088 2.912 25 H -0.299 1.299 26 H -0.281 1.281 27 H -0.289 1.289 28 C -0.136 4.136 29 C 0.515 3.485 30 O -0.573 6.573 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.043 0.957 41 H 0.100 0.900 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.033 0.967 47 H 0.070 0.930 48 H 0.258 0.742 49 H 0.132 0.868 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.283 -4.044 0.312 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.009 4.009 3 N -0.346 5.346 4 C -0.004 4.004 5 C -0.127 4.127 6 H 0.175 0.825 7 C 0.301 3.699 8 O -0.468 6.468 9 N -0.312 5.312 10 C -0.015 4.015 11 C -0.190 4.190 12 C 0.027 3.973 13 H 0.057 0.943 14 C -0.155 4.155 15 C -0.144 4.144 16 C 0.014 3.986 17 H 0.047 0.953 18 C 0.010 3.990 19 N -0.319 5.319 20 C -0.438 4.438 21 H 0.054 0.946 22 C -0.264 4.264 23 N -0.570 5.570 24 Si 0.917 3.083 25 H -0.227 1.227 26 H -0.207 1.207 27 H -0.215 1.215 28 C -0.176 4.176 29 C 0.304 3.696 30 O -0.453 6.453 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.062 0.938 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.150 0.850 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.642 -5.259 1.003 20.358 hybrid contribution 0.029 0.455 -1.007 1.105 sum -19.612 -4.804 -0.003 20.192 Atomic orbital electron populations 1.22083 0.94020 1.03475 1.02157 1.21584 0.95703 0.79943 1.03632 1.48491 1.64656 1.14618 1.06825 1.22023 1.03472 0.87954 0.86918 1.22198 1.00515 0.96277 0.93711 0.82491 1.20774 0.84106 0.82132 0.82850 1.90670 1.50681 1.68839 1.36625 1.48360 1.36075 1.09109 1.37635 1.21127 0.93026 1.00621 0.86736 1.22117 0.98235 1.00358 0.98256 1.21493 0.89914 0.93550 0.92311 0.94332 1.22586 1.02257 0.96004 0.94685 1.21697 0.99637 0.95866 0.97198 1.21393 0.96127 0.92256 0.88828 0.95256 1.22405 0.89103 0.94190 0.93344 1.45229 1.25908 1.57641 1.03140 1.19351 0.94583 1.13450 1.16431 0.94597 1.26355 0.97021 1.02757 1.00264 1.70863 1.38951 0.98498 1.48651 0.83159 0.75170 0.73832 0.76170 1.22660 1.20702 1.21494 1.22479 1.03064 0.95983 0.96074 1.21065 0.75900 0.88385 0.84262 1.90686 1.55592 1.76436 1.22627 0.91071 0.93967 0.89588 0.91464 0.88118 0.91407 0.86515 0.88128 0.87954 0.93837 0.88222 0.93329 0.87255 0.87918 0.92187 0.94824 0.91221 0.93143 0.84983 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 10.24 71.98 0.74 -1.45 16 2 C 0.11 2.01 6.65 86.38 0.57 2.59 16 3 N -0.61 -13.94 2.93 -817.98 -2.40 -16.34 16 4 C 0.12 2.52 6.71 86.83 0.58 3.11 16 5 C -0.11 -2.30 2.50 -10.48 -0.03 -2.33 16 6 H 0.16 2.04 7.20 -2.39 -0.02 2.02 16 7 C 0.51 16.56 6.96 87.59 0.61 17.17 16 8 O -0.59 -24.50 15.03 -3.03 -0.05 -24.55 16 9 N -0.58 -18.35 2.82 -817.59 -2.31 -20.65 16 10 C 0.11 2.38 4.51 86.35 0.39 2.77 16 11 C -0.15 -3.96 4.14 29.60 0.12 -3.83 16 12 C 0.13 4.67 3.99 44.52 0.18 4.85 16 13 H 0.04 1.50 8.17 -2.21 -0.02 1.48 16 14 C -0.12 -3.17 6.06 31.56 0.19 -2.98 16 15 C -0.11 -3.07 5.57 30.31 0.17 -2.90 16 16 C 0.12 4.93 2.39 44.03 0.11 5.03 16 17 H 0.03 1.50 5.35 -1.89 -0.01 1.49 16 18 C 0.13 5.28 6.02 85.84 0.52 5.80 16 19 N -0.60 -27.54 2.32 -644.24 -1.49 -29.03 16 20 C -0.31 -17.24 9.97 84.12 0.84 -16.40 16 21 H 0.04 2.12 8.00 -2.91 -0.02 2.10 16 22 C -0.07 -3.77 5.12 84.86 0.43 -3.34 16 23 N -0.93 -56.14 12.55 21.65 0.27 -55.87 16 24 Si 1.09 55.03 30.02 68.60 2.06 57.09 16 25 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 26 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 28 C -0.14 -3.41 4.25 30.58 0.13 -3.28 16 29 C 0.52 14.62 8.02 87.90 0.71 15.32 16 30 O -0.57 -20.50 17.59 -3.05 -0.05 -20.55 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.41 7.92 -2.39 -0.02 1.40 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.85 6.96 -2.39 -0.02 1.84 16 37 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 1.46 5.30 -1.79 -0.01 1.45 16 39 H 0.10 1.86 4.81 -2.98 -0.01 1.85 16 40 H 0.04 1.37 5.28 -2.33 -0.01 1.36 16 41 H 0.10 1.86 8.16 -2.25 -0.02 1.84 16 42 H 0.05 1.43 8.15 -2.32 -0.02 1.41 16 43 H 0.11 1.99 7.80 -2.35 -0.02 1.98 16 44 H 0.10 2.22 6.12 -2.68 -0.02 2.21 16 45 H 0.06 1.73 8.23 -1.83 -0.02 1.72 16 46 H 0.03 1.71 7.38 -2.64 -0.02 1.69 16 47 H 0.07 2.41 8.11 -2.56 -0.02 2.39 16 48 H 0.26 15.64 6.78 -92.71 -0.63 15.01 16 49 H 0.13 2.68 6.37 -2.39 -0.02 2.67 16 50 H 0.08 2.70 7.03 -2.38 -0.02 2.69 16 Total: -1.00 -80.32 371.53 3.39 -76.93 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.09 Total: 12.84 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.26 Total: 20.13 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -5.93 Total: -121.89 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.10 Total: -45.10 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 2.06 Total: 57.09 kcal Total: -80.32 3.39 -76.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045789660.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.092 kcal (2) G-P(sol) polarization free energy of solvation -80.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds