Wall clock time and date at job start Tue Mar 31 2020 18:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46744 * 2 1 4 4 C 1.50704 * 109.47249 * 119.99666 * 2 1 3 5 5 O 1.21274 * 119.99831 * 108.97801 * 4 2 1 6 6 N 1.34778 * 119.99988 * 288.98089 * 4 2 1 7 7 C 1.46671 * 125.33836 * 4.07651 * 6 4 2 8 8 C 1.53731 * 107.94077 * 180.55028 * 7 6 4 9 9 H 1.08992 * 112.55911 * 139.72244 * 8 7 6 10 10 C 1.53696 * 109.33707 * 266.25576 * 8 7 6 11 11 N 1.46638 * 108.00931 * 127.55853 * 10 8 7 12 12 C 1.36931 * 125.32476 * 180.81320 * 11 10 8 13 13 H 1.08002 * 119.99668 * 173.88931 * 12 11 10 14 14 C 1.38814 * 120.00690 * 353.88799 * 12 11 10 15 15 N 1.31615 * 119.99308 * 7.22975 * 14 12 11 16 16 Si 1.86797 * 120.00220 * 187.22947 * 14 12 11 17 17 H 1.48503 * 109.47106 * 94.98450 * 16 14 12 18 18 H 1.48503 * 109.46982 * 214.98292 * 16 14 12 19 19 H 1.48497 * 109.47131 * 334.98481 * 16 14 12 20 20 C 1.46745 * 109.34155 * 0.83492 * 11 10 8 21 21 C 1.53933 * 106.71815 * 341.65675 * 20 11 10 22 22 H 1.09002 * 113.00980 * 150.83607 * 21 20 11 23 23 C 1.46777 * 125.33664 * 183.78091 * 6 4 2 24 24 N 1.46497 * 109.47266 * 240.00146 * 2 1 3 25 25 C 1.45753 * 117.94765 * 119.99913 * 24 2 1 26 26 C 1.52920 * 110.48574 * 160.92677 * 25 24 2 27 27 C 1.53340 * 108.67899 * 50.75066 * 26 25 24 28 28 C 1.53077 * 108.42249 * 292.46932 * 27 26 25 29 29 C 1.33359 * 117.94615 * 299.73315 * 24 2 1 30 30 O 1.21285 * 118.24018 * 2.22425 * 29 24 2 31 31 H 1.08992 * 109.47591 * 62.11277 * 1 2 3 32 32 H 1.09004 * 109.47041 * 182.11214 * 1 2 3 33 33 H 1.09006 * 109.47557 * 302.10437 * 1 2 3 34 34 H 1.09003 * 109.77112 * 300.16810 * 7 6 4 35 35 H 1.08996 * 109.76770 * 60.93151 * 7 6 4 36 36 H 1.09007 * 109.75572 * 247.19947 * 10 8 7 37 37 H 1.08998 * 109.76297 * 7.90934 * 10 8 7 38 38 H 0.97001 * 119.99651 * 180.02562 * 15 14 12 39 39 H 1.08996 * 110.00528 * 222.34883 * 20 11 10 40 40 H 1.08994 * 110.00825 * 100.97411 * 20 11 10 41 41 H 1.09010 * 110.02181 * 280.76856 * 23 6 4 42 42 H 1.09001 * 110.03084 * 42.18483 * 23 6 4 43 43 H 1.09003 * 109.30010 * 281.23212 * 25 24 2 44 44 H 1.08997 * 109.30448 * 40.81658 * 25 24 2 45 45 H 1.09000 * 109.60461 * 170.50830 * 26 25 24 46 46 H 1.09009 * 109.60368 * 290.82866 * 26 25 24 47 47 H 1.08998 * 109.67473 * 52.19904 * 27 26 25 48 48 H 1.08997 * 109.67503 * 172.73688 * 27 26 25 49 49 H 1.09003 * 109.39905 * 169.02812 * 28 27 26 50 50 H 1.08995 * 109.40126 * 288.85239 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.5565 -1.7994 1.1305 6 7 1.8991 -0.1354 2.4422 7 6 1.2118 1.1327 2.7085 8 6 1.3106 1.4174 4.2160 9 1 1.5001 2.4689 4.4314 10 6 0.0562 0.8754 4.9195 11 7 0.4920 0.0154 6.0244 12 6 -0.3394 -0.6627 6.8753 13 1 0.0728 -1.3505 7.5988 14 6 -1.7119 -0.4661 6.8081 15 7 -2.2259 0.2596 5.8379 16 14 -2.8291 -1.2315 8.0947 17 1 -3.0969 -0.2422 9.1694 18 1 -4.1108 -1.6334 7.4613 19 1 -2.1680 -2.4273 8.6762 20 6 1.9584 -0.0042 6.0758 21 6 2.4561 0.4879 4.7048 22 1 3.4233 0.9879 4.7570 23 6 2.4136 -0.6830 3.7030 24 7 2.0183 -0.6906 -1.1961 25 6 2.8530 0.0604 -2.1255 26 6 3.6412 -0.8915 -3.0261 27 6 2.6685 -1.9062 -3.6389 28 6 2.1402 -2.8068 -2.5195 29 6 1.6758 -1.9685 -1.3637 30 8 0.9461 -2.4796 -0.5407 31 1 -0.3634 0.4806 -0.9082 32 1 -0.3633 -1.0270 0.0379 33 1 -0.3634 0.5462 0.8705 34 1 1.6911 1.9363 2.1493 35 1 0.1648 1.0531 2.4161 36 1 -0.5352 1.7043 5.3087 37 1 -0.5404 0.2961 4.2147 38 1 -3.1849 0.3973 5.7911 39 1 2.3116 -1.0191 6.2584 40 1 2.3130 0.6618 6.8623 41 1 1.7494 -1.4665 4.0682 42 1 3.4168 -1.0827 3.5546 43 1 2.2206 0.6990 -2.7424 44 1 3.5511 0.6802 -1.5629 45 1 4.1272 -0.3250 -3.8205 46 1 4.3944 -1.4136 -2.4359 47 1 1.8379 -1.3802 -4.1095 48 1 3.1887 -2.5108 -4.3817 49 1 1.3081 -3.4019 -2.8959 50 1 2.9365 -3.4703 -2.1825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049230681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:41 Heat of formation + Delta-G solvation = -28.503805 kcal Electronic energy + Delta-G solvation = -30984.488979 eV Core-core repulsion = 27012.632322 eV Total energy + Delta-G solvation = -3971.856657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.03698 -39.75350 -37.88509 -36.46365 -34.88659 -34.68544 -32.33268 -30.84996 -30.13289 -29.69270 -29.15049 -25.76605 -25.50327 -24.81052 -24.20596 -23.03789 -22.01323 -20.07780 -19.50541 -19.37172 -18.30257 -17.35618 -16.87593 -16.60632 -15.91561 -15.83265 -15.58876 -14.78473 -14.55083 -14.43035 -14.24422 -14.05497 -13.86952 -13.66517 -13.39194 -13.23276 -13.07013 -12.75202 -12.30845 -12.12602 -12.01071 -11.95081 -11.80171 -11.58914 -11.44386 -11.35199 -11.24859 -11.22254 -11.16841 -10.87280 -10.77629 -10.34317 -10.07074 -10.06417 -9.83843 -9.68087 -9.58137 -9.35768 -8.65488 -8.55263 -8.19033 -6.80873 -5.72241 -3.03932 2.66709 2.90890 2.95218 3.42272 3.46659 3.47992 3.49693 4.39360 4.43318 4.44780 4.51945 4.57758 4.65595 4.88530 4.93436 5.03486 5.09428 5.13144 5.23333 5.24480 5.31526 5.42995 5.49106 5.52231 5.54614 5.60769 5.62750 5.64752 5.71639 5.76188 5.76666 5.88258 5.91571 6.06493 6.19349 6.25894 6.33827 6.44026 6.47700 6.57995 6.64578 6.72949 6.85616 7.49104 7.54355 7.59754 7.81919 7.88117 8.27983 8.32521 8.54381 9.23621 9.84234 10.48176 11.40044 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.003031 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.107573 B = 9234.340908 C = 9746.150047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 H 0.104 0.896 4 C 0.522 3.478 5 O -0.525 6.525 6 N -0.609 5.609 7 C 0.108 3.892 8 C -0.122 4.122 9 H 0.091 0.909 10 C 0.185 3.815 11 N -0.602 5.602 12 C -0.229 4.229 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.919 5.919 16 Si 0.911 3.089 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C 0.145 3.855 21 C -0.111 4.111 22 H 0.088 0.912 23 C 0.124 3.876 24 N -0.597 5.597 25 C 0.116 3.884 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.132 4.132 29 C 0.522 3.478 30 O -0.523 6.523 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.252 0.748 39 H 0.037 0.963 40 H 0.021 0.979 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.097 0.903 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.126 4.629 -19.703 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.026 3.974 3 H 0.122 0.878 4 C 0.308 3.692 5 O -0.401 6.401 6 N -0.343 5.343 7 C -0.015 4.015 8 C -0.142 4.142 9 H 0.109 0.891 10 C 0.060 3.940 11 N -0.328 5.328 12 C -0.357 4.357 13 H 0.096 0.904 14 C -0.202 4.202 15 N -0.567 5.567 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.206 1.206 20 C 0.019 3.981 21 C -0.131 4.131 22 H 0.106 0.894 23 C 0.002 3.998 24 N -0.331 5.331 25 C -0.007 4.007 26 C -0.173 4.173 27 C -0.160 4.160 28 C -0.172 4.172 29 C 0.311 3.689 30 O -0.398 6.398 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.115 0.885 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.797 3.660 -19.401 22.999 hybrid contribution -0.569 -0.185 0.695 0.917 sum 11.229 3.475 -18.706 22.092 Atomic orbital electron populations 1.22253 0.92110 1.05686 1.02732 1.20869 0.96768 0.95787 0.84012 0.87809 1.20287 0.79507 0.85874 0.83484 1.90674 1.44134 1.19645 1.85604 1.48182 1.55968 1.23559 1.06596 1.22090 0.97424 0.84887 0.97097 1.23134 0.98616 0.99455 0.93014 0.89099 1.21118 0.89546 0.94051 0.89311 1.44190 0.99080 1.54992 1.34547 1.19043 0.87568 1.18375 1.10759 0.90402 1.24800 0.96673 1.00164 0.98581 1.69960 1.11094 1.43864 1.31760 0.86111 0.80341 0.78467 0.80956 1.21638 1.21788 1.20636 1.21162 0.86388 0.97982 0.92609 1.22960 0.98148 0.95550 0.96436 0.89356 1.21930 0.98861 0.96631 0.82375 1.47123 1.51973 1.11654 1.22387 1.21407 0.93394 0.94293 0.91616 1.21874 0.98323 0.97906 0.99242 1.21649 0.99312 0.97546 0.97477 1.21636 1.03275 0.98372 0.93878 1.19935 0.80607 0.81260 0.87121 1.90726 1.36044 1.69589 1.43427 0.91826 0.89267 0.90477 0.92462 0.90538 0.93445 0.93450 0.93774 0.94482 0.96165 0.90648 0.91917 0.91594 0.90961 0.89843 0.90801 0.91141 0.90691 0.88456 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 8.93 37.16 0.33 -2.04 16 2 C 0.13 1.81 2.41 -69.08 -0.17 1.64 16 3 H 0.10 1.07 7.53 -51.93 -0.39 0.68 16 4 C 0.52 9.34 6.62 -10.98 -0.07 9.27 16 5 O -0.53 -11.35 14.26 -17.43 -0.25 -11.59 16 6 N -0.61 -10.59 3.31 -172.16 -0.57 -11.16 16 7 C 0.11 1.65 5.44 -3.57 -0.02 1.63 16 8 C -0.12 -2.12 4.02 -88.60 -0.36 -2.47 16 9 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 10 C 0.18 4.31 4.76 -3.61 -0.02 4.29 16 11 N -0.60 -15.18 3.37 -171.93 -0.58 -15.76 16 12 C -0.23 -6.42 10.24 -15.06 -0.15 -6.57 16 13 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 14 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 15 N -0.92 -26.85 10.30 55.49 0.57 -26.28 16 16 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.15 2.96 6.37 -3.42 -0.02 2.94 16 21 C -0.11 -1.88 4.19 -88.25 -0.37 -2.25 16 22 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 23 C 0.12 2.30 6.09 -3.29 -0.02 2.28 16 24 N -0.60 -7.40 2.68 -168.71 -0.45 -7.85 16 25 C 0.12 0.91 6.25 -4.49 -0.03 0.88 16 26 C -0.14 -0.87 6.02 -26.60 -0.16 -1.03 16 27 C -0.12 -0.82 6.04 -26.52 -0.16 -0.98 16 28 C -0.13 -1.35 6.03 -28.11 -0.17 -1.52 16 29 C 0.52 7.69 6.12 -11.88 -0.07 7.62 16 30 O -0.52 -10.33 12.53 -17.44 -0.22 -10.55 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.57 5.92 -51.93 -0.31 1.27 16 33 H 0.08 1.07 5.42 -51.93 -0.28 0.79 16 34 H 0.06 0.68 7.96 -51.93 -0.41 0.26 16 35 H 0.08 1.23 5.20 -51.93 -0.27 0.96 16 36 H 0.05 1.23 7.32 -51.92 -0.38 0.85 16 37 H 0.05 1.25 6.67 -51.93 -0.35 0.91 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.04 0.76 7.94 -51.93 -0.41 0.34 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 1.67 7.72 -51.92 -0.40 1.27 16 42 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.50 8.04 -51.93 -0.42 0.09 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.56 8.13 -51.92 -0.42 0.13 16 47 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -36.18 375.83 -10.65 -46.83 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.24 Total: -0.09 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -1.55 Total: 13.42 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -1.03 Total: -61.06 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.47 Total: -22.14 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.18 -10.65 -46.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049230681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.323 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds