Wall clock time and date at job start Tue Mar 31 2020 19:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46855 * 2 1 4 4 C 1.46760 * 124.35200 * 89.99889 * 3 2 1 5 5 C 1.54481 * 105.47609 * 162.96111 * 4 3 2 6 6 H 1.08998 * 110.97225 * 267.26301 * 5 4 3 7 7 C 1.50695 * 110.97162 * 143.53603 * 5 4 3 8 8 O 1.21287 * 119.99624 * 0.02562 * 7 5 4 9 9 N 1.34776 * 120.00482 * 180.02562 * 7 5 4 10 10 C 1.47997 * 120.38138 * 1.20596 * 9 7 5 11 11 C 1.53462 * 107.34610 * 231.92444 * 10 9 7 12 12 C 1.52736 * 108.44511 * 301.36733 * 11 10 9 13 13 C 1.53011 * 110.80060 * 63.76569 * 12 11 10 14 14 H 1.09008 * 111.38381 * 68.76640 * 13 12 11 15 15 C 1.45113 * 119.57931 * 180.02562 * 9 7 5 16 16 H 1.09003 * 109.97315 * 11.90638 * 15 9 7 17 17 C 1.54424 * 112.30386 * 249.06447 * 15 9 7 18 18 C 1.54571 * 102.44758 * 203.08303 * 17 15 9 19 19 N 1.47123 * 107.25256 * 21.66933 * 18 17 15 20 20 C 1.36939 * 125.75949 * 182.61558 * 19 18 17 21 21 H 1.08000 * 119.99179 * 179.97438 * 20 19 18 22 22 C 1.38807 * 120.00368 * 359.97438 * 20 19 18 23 23 N 1.31612 * 120.00426 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47587 * 59.99787 * 24 22 20 26 26 H 1.48499 * 109.47298 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47192 * 300.00022 * 24 22 20 28 28 C 1.54634 * 101.76283 * 25.42067 * 5 4 3 29 29 C 1.34418 * 124.34672 * 269.97999 * 3 2 1 30 30 O 1.21283 * 124.94672 * 0.42665 * 29 3 2 31 31 H 1.09000 * 109.47093 * 299.99763 * 1 2 3 32 32 H 1.08990 * 109.47152 * 60.00299 * 1 2 3 33 33 H 1.09004 * 109.46361 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47093 * 240.00236 * 2 1 3 35 35 H 1.08996 * 109.47584 * 119.99568 * 2 1 3 36 36 H 1.09001 * 110.24001 * 43.96490 * 4 3 2 37 37 H 1.08996 * 110.24800 * 281.96761 * 4 3 2 38 38 H 1.09001 * 110.41904 * 112.22195 * 10 9 7 39 39 H 1.08996 * 109.49103 * 351.11188 * 10 9 7 40 40 H 1.08999 * 109.64606 * 181.67832 * 11 10 9 41 41 H 1.09001 * 109.63908 * 61.05702 * 11 10 9 42 42 H 1.09004 * 109.21049 * 184.10826 * 12 11 10 43 43 H 1.08997 * 109.21166 * 303.42739 * 12 11 10 44 44 H 1.09009 * 110.80621 * 321.31809 * 17 15 9 45 45 H 1.08991 * 110.81314 * 84.64181 * 17 15 9 46 46 H 1.09000 * 109.88500 * 141.08742 * 18 17 15 47 47 H 1.08997 * 109.88065 * 262.25954 * 18 17 15 48 48 H 0.96998 * 120.00454 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.48633 * 93.88000 * 28 5 4 50 50 H 1.09002 * 110.48580 * 216.52353 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1621 1.2116 5 6 3.1748 3.3440 0.7487 6 1 4.2334 3.1031 0.8456 7 6 2.8380 4.5988 1.5122 8 8 1.9716 4.5783 2.3607 9 7 3.4995 5.7439 1.2521 10 6 4.5396 5.7851 0.2001 11 6 5.8030 6.3879 0.8292 12 6 5.4628 7.7800 1.3574 13 6 4.4244 7.6972 2.4782 14 1 4.8422 7.2372 3.3739 15 6 3.1680 6.9468 1.9931 16 1 2.5317 6.6975 2.8423 17 6 2.4773 8.0080 1.1093 18 6 2.7682 9.3193 1.8742 19 7 3.9414 9.0754 2.7278 20 6 4.4929 9.9708 3.6050 21 1 5.3580 9.6920 4.1884 22 6 3.9402 11.2364 3.7442 23 7 2.8863 11.5762 3.0328 24 14 4.6931 12.4579 4.9402 25 1 6.1029 12.7224 4.5558 26 1 3.9235 13.7273 4.9013 27 1 4.6518 11.8953 6.3139 28 6 2.7701 3.4753 -0.7379 29 6 2.2714 2.0962 -1.1098 30 8 2.1219 1.6942 -2.2443 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 2.8320 1.5531 1.9383 37 1 1.3637 2.5311 1.6427 38 1 4.2113 6.4037 -0.6353 39 1 4.7461 4.7728 -0.1470 40 1 6.5872 6.4634 0.0759 41 1 6.1400 5.7563 1.6511 42 1 6.3686 8.2491 1.7415 43 1 5.0641 8.3850 0.5431 44 1 2.9226 8.0330 0.1146 45 1 1.4051 7.8220 1.0472 46 1 2.9839 10.1207 1.1676 47 1 1.9102 9.5868 2.4909 48 1 2.4998 12.4605 3.1304 49 1 1.9753 4.2123 -0.8532 50 1 3.6335 3.7456 -1.3459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049507382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:53 Heat of formation + Delta-G solvation = -54.639296 kcal Electronic energy + Delta-G solvation = -30541.417599 eV Core-core repulsion = 26568.427622 eV Total energy + Delta-G solvation = -3972.989977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.15621 -41.04700 -39.44360 -37.38807 -36.75337 -35.00280 -34.01339 -33.67837 -31.20013 -30.50113 -29.63029 -28.75645 -26.65732 -25.91833 -24.78573 -23.62011 -23.20911 -21.97027 -21.12740 -20.34903 -19.49860 -18.80086 -18.58853 -17.76721 -17.33536 -16.79510 -16.72112 -16.18203 -16.10256 -15.95995 -15.26851 -15.08320 -14.93482 -14.85630 -14.63173 -14.45696 -14.35827 -14.04973 -14.01817 -13.57994 -13.47727 -13.22351 -13.06343 -12.94080 -12.77395 -12.57922 -12.52345 -12.39104 -12.29081 -12.21401 -12.09838 -11.99515 -11.88053 -11.58203 -11.49275 -11.14483 -11.11990 -10.70043 -10.66310 -9.76950 -9.60250 -8.87992 -7.83324 -5.18888 1.45642 1.47860 1.48697 1.54609 1.54925 1.79338 2.08527 2.50586 3.10353 3.32447 3.34727 3.53765 3.61447 3.86491 3.88526 3.96135 4.06931 4.10722 4.14859 4.15647 4.23165 4.26241 4.40811 4.47589 4.55717 4.56738 4.60378 4.65628 4.69520 4.77677 4.81717 4.86531 4.88765 4.93359 4.95604 5.01815 5.13064 5.24276 5.25697 5.40805 5.42888 5.55243 5.57961 5.63307 5.68143 5.75915 6.05676 6.19410 6.44075 7.08187 7.09850 7.14146 7.77041 8.42030 9.26500 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026551 B = 0.002637 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.337136 B =10616.046007 C =10910.719396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.117 3.883 5 C -0.108 4.108 6 H 0.156 0.844 7 C 0.523 3.477 8 O -0.579 6.579 9 N -0.587 5.587 10 C 0.099 3.901 11 C -0.123 4.123 12 C -0.121 4.121 13 C 0.152 3.848 14 H 0.051 0.949 15 C 0.146 3.854 16 H 0.069 0.931 17 C -0.134 4.134 18 C 0.192 3.808 19 N -0.619 5.619 20 C -0.235 4.235 21 H 0.082 0.918 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.976 3.024 25 H -0.275 1.275 26 H -0.297 1.297 27 H -0.279 1.279 28 C -0.139 4.139 29 C 0.514 3.486 30 O -0.575 6.575 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.010 0.990 47 H 0.008 0.992 48 H 0.246 0.754 49 H 0.103 0.897 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 -23.140 -7.808 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.348 5.348 4 C -0.006 4.006 5 C -0.129 4.129 6 H 0.174 0.826 7 C 0.312 3.688 8 O -0.459 6.459 9 N -0.317 5.317 10 C -0.021 4.021 11 C -0.161 4.161 12 C -0.161 4.161 13 C 0.045 3.955 14 H 0.069 0.931 15 C 0.040 3.960 16 H 0.087 0.913 17 C -0.173 4.173 18 C 0.066 3.934 19 N -0.344 5.344 20 C -0.364 4.364 21 H 0.100 0.900 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.201 1.201 26 H -0.223 1.223 27 H -0.205 1.205 28 C -0.179 4.179 29 C 0.303 3.697 30 O -0.455 6.455 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.028 0.972 47 H 0.026 0.974 48 H 0.055 0.945 49 H 0.121 0.879 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.322 -23.227 -7.851 24.742 hybrid contribution -0.304 1.631 0.924 1.899 sum 3.018 -21.596 -6.927 22.879 Atomic orbital electron populations 1.22138 0.95841 1.03254 1.01357 1.21550 0.94420 0.80217 1.04268 1.48515 1.64782 1.14461 1.07032 1.22041 1.00232 0.91457 0.86865 1.22208 1.04580 0.91812 0.94286 0.82627 1.20660 0.80492 0.84962 0.82686 1.90717 1.33678 1.85611 1.35858 1.47862 1.38384 1.07947 1.37522 1.22527 0.86121 1.04269 0.89189 1.21894 0.97682 0.94974 1.01578 1.21920 0.98358 0.97789 0.98028 1.21529 0.93090 0.84681 0.96196 0.93100 1.21204 0.96235 0.84301 0.94249 0.91257 1.22909 1.00047 0.95073 0.99277 1.20832 0.88872 0.92428 0.91241 1.44936 1.32497 1.10397 1.46521 1.19357 1.09325 0.92908 1.14766 0.90014 1.25613 0.98804 0.99557 1.01995 1.70165 1.25074 1.20158 1.44748 0.85187 0.77609 0.77961 0.78790 1.20113 1.22329 1.20542 1.22467 1.05259 0.95086 0.95126 1.21149 0.76398 0.88090 0.84086 1.90711 1.55942 1.76123 1.22689 0.92417 0.94593 0.89461 0.90518 0.87348 0.87091 0.90935 0.89858 0.85651 0.87981 0.90840 0.93628 0.93238 0.89883 0.91692 0.97222 0.97399 0.94514 0.87883 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 71.98 0.74 -1.55 16 2 C 0.12 1.50 6.65 86.38 0.57 2.07 16 3 N -0.61 -9.87 2.93 -817.98 -2.40 -12.27 16 4 C 0.12 1.67 6.71 86.83 0.58 2.25 16 5 C -0.11 -1.44 2.51 -10.48 -0.03 -1.47 16 6 H 0.16 1.01 7.54 -2.39 -0.02 0.99 16 7 C 0.52 12.15 6.95 87.66 0.61 12.76 16 8 O -0.58 -18.86 14.83 -3.05 -0.05 -18.90 16 9 N -0.59 -14.00 2.78 -791.41 -2.20 -16.20 16 10 C 0.10 1.53 5.55 86.25 0.48 2.01 16 11 C -0.12 -2.24 6.10 30.66 0.19 -2.05 16 12 C -0.12 -3.72 5.10 30.51 0.16 -3.57 16 13 C 0.15 5.82 3.59 45.07 0.16 5.98 16 14 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 15 C 0.15 5.04 3.05 46.13 0.14 5.18 16 16 H 0.07 2.86 6.96 -2.39 -0.02 2.84 16 17 C -0.13 -4.92 6.10 31.61 0.19 -4.72 16 18 C 0.19 9.47 5.19 86.80 0.45 9.92 16 19 N -0.62 -30.94 2.91 -667.23 -1.94 -32.89 16 20 C -0.23 -12.95 10.29 84.03 0.86 -12.09 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 22 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 23 N -0.95 -57.59 10.33 21.65 0.22 -57.37 16 24 Si 0.98 45.82 29.55 68.60 2.03 47.84 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 28 C -0.14 -1.95 5.44 30.59 0.17 -1.78 16 29 C 0.51 10.34 8.02 87.90 0.71 11.04 16 30 O -0.57 -16.28 17.60 -3.04 -0.05 -16.33 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.08 1.10 7.93 -2.39 -0.02 1.08 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.41 6.96 -2.39 -0.02 1.39 16 38 H 0.08 1.25 7.53 -2.39 -0.02 1.23 16 39 H 0.13 0.91 4.65 -2.39 -0.01 0.90 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.05 1.66 7.12 -2.39 -0.02 1.65 16 44 H 0.08 2.65 6.81 -2.38 -0.02 2.64 16 45 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.01 0.53 7.60 -2.39 -0.02 0.51 16 47 H 0.01 0.44 7.30 -2.39 -0.02 0.42 16 48 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 49 H 0.10 1.68 7.89 -2.39 -0.02 1.67 16 50 H 0.14 1.18 6.99 -2.39 -0.02 1.17 16 Total: -1.00 -78.53 382.06 2.99 -75.54 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.93 Total: 9.92 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 6.45 Total: 20.65 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -6.32 Total: -118.72 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.10 Total: -35.24 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -78.53 2.99 -75.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049507382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.901 kcal (2) G-P(sol) polarization free energy of solvation -78.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds